| 研究課題/領域番号 |
22K15466
|
|---|
| 研究種目 |
若手研究
|
| 配分区分 | 基金 |
|---|
| 審査区分 |
小区分49050:細菌学関連
|
|---|
| 研究機関 | 国立研究開発法人国立国際医療研究センター |
|---|
研究代表者 |
アイビエケ アラファテ 国立研究開発法人国立国際医療研究センター, 研究所, 感染症制御研究部 細菌感染研究室 研究員 (80933647)
|
|---|
| 研究期間 (年度) |
2022-04-01 – 2025-03-31
|
| 研究課題ステータス |
交付 (2022年度)
|
| 配分額 *注記 |
4,680千円 (直接経費: 3,600千円、間接経費: 1,080千円)
2024年度: 1,560千円 (直接経費: 1,200千円、間接経費: 360千円)
2023年度: 1,560千円 (直接経費: 1,200千円、間接経費: 360千円)
2022年度: 1,560千円 (直接経費: 1,200千円、間接経費: 360千円)
|
|---|
| キーワード | Enterotoxigenic E. coli / Colonization factor / CS6 / Receptor / Cell receptor |
|---|
| 研究開始時の研究の概要 |
Enterotoxigenic E. coli (ETEC) has significant morbidity and mortality especially among children in developing nations. We aim to identify the host receptor for a major ETEC colonization factor, CS6, mainly by using the difference in the binding affinity of CS6 to different cell lines.
|
| 研究実績の概要 |
Prior research has proposed mucin as a potential receptor for the ETEC colonization factor CS6. We performed RNA sequencing and subsequent differential gene expression analysis on INT407 and Caco-2 cell lines, which display high and low CS6 binding affinity, respectively. Based on gene expression profiles and previous findings, Mucin 1 and Mucin 16, two trans-membrane glycoproteins, were selected as potential receptor candidates. Using shRNA interference through lentiviral delivery, we created knockdown strains of these candidates in the INT407 cell line. We assessed knockdown efficiencies at both RNA and protein levels employing RT-qPCR and ELISA. We analyzed the adhesion of ETEC CS6 to the knockdown cells and compared it with control and non-target knockdown cells, finding no significant decrease in the number of adhesive bacteria. Additionally, we conducted immuno-fluorescent assays on the adhesion of EYFP-expressing ETEC bacteria to INT407 cells to observe co-localization of Mucin 1 and Mucin 16 with the CS6-expressing bacteria. The results demonstrated that Mucin 1 did not co-localize with ETEC 4266, and various antibodies were unable to distinctly label Mucin 16 in INT407 cells. These findings suggest that the transmembrane proteins Mucin 1 and Mucin 16 may not be potential receptors for CS6.
|
| 現在までの達成度 (区分) |
現在までの達成度 (区分)
2: おおむね順調に進展している
理由
While our selected receptor candidates, Mucin 1 and Mucin 16, were determined not to be the receptors for CS6, we have nevertheless obtained valuable data. This data strongly suggests that these transmembrane mucins may not serve as receptors for CS6. Additionally, we have gathered insightful information on the differential gene expression in the INT407 and Caco-2 cell lines, which demonstrate high and low CS6 binding affinity respectively. This information is instrumental in guiding our ongoing efforts to select and confirm further receptor candidates for CS6 within these cell lines.
|
| 今後の研究の推進方策 |
Our upcoming research activities aim to employ two distinct proteomic methods to select new receptor candidates.
1.Pull-down Assay: Our first approach involves conducting a pull-down assay to identify potential CS6 receptor proteins. We will use a heat-saline extract of Top10pCS6, which contains CS6, as a bait protein. This will be mixed with whole cell lysates or membrane protein extracts from INT407 and Caco-2 to form a CS6-receptor ligand. This ligand will then be captured using a CS6 antibody and protein G. Subsequent SDS-PAGE will be conducted to examine protein candidates that are either specific to or are present in higher concentrations in INT407. The candidate proteins will be identified using Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS).
2.Far-Western Blotting Assay: Our second strategy involves conducting a far-western blotting assay to identify potential receptor candidates. We will use membrane protein extracts from INT407 and Caco-2 to conduct SDS-PAGE, after which the proteins will be transferred to a PVDF membrane. The membrane will then be probed with CS6 to select protein bands that are either specific to INT407 or are present in higher concentrations in INT407 compared to Caco-2. Similar to the first strategy, LC-MS/MS will be used to identify the candidate proteins.
If successful, these two strategies will enable us to pinpoint potential receptor candidates for CS6, therefore to achieve better understanding the binding mechanism.
|
