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2018 年度 実績報告書

Determining sulfur isotope fractionation values of individual enzymes and how they evolve through time.

研究課題

研究課題/領域番号 18H01325
研究機関東京工業大学

研究代表者

McGlynn Shawn・E.  東京工業大学, 地球生命研究所, 准教授 (10751084)

研究分担者 上野 雄一郎  東京工業大学, 理学院, 教授 (90422542)
研究期間 (年度) 2018-04-01 – 2021-03-31
キーワードenzyme mechanism / sequence evolution / kinetic isotope effect / sulfate reduction / geobiology
研究実績の概要

In this year, we obtained the constructs for Apr enzyme homologs which will allow co-expression of the alpha and beta subunits from the same plasmids from multiple cloning sites. We also hired a new postdoctoral researcher, who is currently expressing and purifying these homologs. In addition, we developed a new protocol to synthesize the substrate of the enzyme (APS), using a polyphosphatase enzyme as a phosphorylating agent. The new system consumes product, and provides substrate, therefore we expect to be able to accurately measure burst phase kinetics in the absence of product inhibition.
In addition to starting characterization of these new enzyme homologs, we finished the characterization of Apr from the organism Desulfovibrio vulgaris Miyazaki strain F. These findings were published this year and form the foundation of our future comparisons.
We showed that the Apr enzyme may itself exert a regulatory influence on overall whole cell isotope fractionations, and integrated the KIE measurement of the enzyme into a steady state reaction model of cell physiology to interpret the results. Our findings indicate indicate that cells which have ample thermodynamic driving potential, and have sufficient sulfate as a respiratory substrate, display isotope fractionation values near the KIE value of the enzyme, thus creating a link between specific enzyme KIE and whole cell physiology.

現在までの達成度 (区分)
現在までの達成度 (区分)

2: おおむね順調に進展している

理由

Our progress is proceeding as planned.

今後の研究の推進方策

The plan for our future work remains the same as in the initial proposal.

  • 研究成果

    (5件)

すべて 2019 2018 その他

すべて 雑誌論文 (1件) (うち国際共著 1件、 査読あり 1件、 オープンアクセス 1件) 学会発表 (3件) (うち国際学会 1件、 招待講演 3件) 備考 (1件)

  • [雑誌論文] Role of APS reductase in biogeochemical sulfur isotope fractionation2019

    • 著者名/発表者名
      Sim Min Sub、Ogata Hideaki、Lubitz Wolfgang、Adkins Jess F.、Sessions Alex L.、Orphan Victoria J.、McGlynn Shawn E.
    • 雑誌名

      Nature Communications

      巻: 10 ページ: 1-9

    • DOI

      10.1038/s41467-018-07878-4

    • 査読あり / オープンアクセス / 国際共著
  • [学会発表] Energy Controlled Distribution of Isotopes in Biocatalytic Systems: Case Study on Adenylyl-Sulfate Reductase2018

    • 著者名/発表者名
      Shawn McGlynn
    • 学会等名
      Helmholtz-Zentrum Umweltforschung
    • 招待講演
  • [学会発表] Energy Controlled Distribution of Isotopes in Biocatalytic Systems: Case Study on APS Reductase.2018

    • 著者名/発表者名
      Shawn McGlynn
    • 学会等名
      Montana State University, Chemistry Department Seminar
    • 招待講演
  • [学会発表] Energy Controlled Distribution of Isotopes in Biocatalytic Systems: Case Study on APS Reductase2018

    • 著者名/発表者名
      Shawn McGlynn
    • 学会等名
      American Society of Microbiologists
    • 国際学会 / 招待講演
  • [備考] https://sites.google.com/elsi.jp/mcglynn/

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公開日: 2019-12-27  

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