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2020 年度 実績報告書

Efficient polymerase chain reaction from single DNA molecules

研究課題

研究課題/領域番号 18K14260
研究機関国立研究開発法人海洋研究開発機構

研究代表者

張 翼  国立研究開発法人海洋研究開発機構, 超先鋭研究開発部門(超先鋭研究プログラム), 研究員 (40795358)

研究期間 (年度) 2018-04-01 – 2021-03-31
キーワードRestriction enzyme / Electrophoresis / Digital counting / Droplet / Biosensor
研究実績の概要

Sensitivity improvement is one of the most central tasks in the development of bioanalytical methods. After publishing the unique droplet technology last year (Zhang et al., Science Advances, 2019, 5(8): eaav8185), an unexpected experimental result allowed an unplanned R&D of a new method to quantify the digest efficiency of any kinds of restriction enzymes, a new application of digital bioassays, with unprecedented sensitivity. Once I used a DNA digest solution as the source of template DNA for the cell-free fluorescent protein synthesis; but surprisingly, many fluorescent droplets appeared on the array. The complete digestion was pre-confirmed using gel electrophoresis, a gold-standard confirmation experiment in every molecular biology laboratory, which suggested that the droplet system can be diverted into a convenient analytical device to interrogate the digest efficiency. And importantly, this approach quantified the template DNA of much lower concentrations that cannot be detected by the ensemble-based methods. The same rationale was extended to multiplexed assays and applicable to any DNA-degrading or genome-editing enzymes. The accumulation of these results produced a new paper this year (Zhang et al., PLOS ONE, 2020, 15(12): e0244464).

備考

Blue Earth海と地球の情報誌, 第32巻 第3号 (通巻165号), pp. 1-3.

  • 研究成果

    (3件)

すべて 2020 その他

すべて 雑誌論文 (2件) (うち査読あり 2件、 オープンアクセス 1件) 備考 (1件)

  • [雑誌論文] A single-molecule counting approach for convenient and ultrasensitive measurement of restriction digest efficiencies2020

    • 著者名/発表者名
      Zhang Yi、Nunoura Takuro、Nishiura Daisuke、Hirai Miho、Shimamura Shigeru、Kurosawa Kanako、Ishiwata Chieko、Deguchi Shigeru
    • 雑誌名

      PLOS ONE

      巻: 15 ページ: e0244464

    • DOI

      10.1371/journal.pone.0244464

    • 査読あり / オープンアクセス
  • [雑誌論文] A Femtoliter Droplet Array for Massively Parallel Protein Synthesis from Single DNA Molecules2020

    • 著者名/発表者名
      Zhang Yi、Kurosawa Kanako、Nishiura Daisuke、Tei Mika、Tsudome Mikiko
    • 雑誌名

      Journal of Visualized Experiments

      巻: (160) ページ: e60945

    • DOI

      10.3791/60945

    • 査読あり
  • [備考] 特集 こんな技術が欲しかった

    • URL

      http://www.jamstec.go.jp/j/pr/wp-content/uploads/2020/12/BE165all.pdf

URL: 

公開日: 2021-12-27  

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