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2022 年度 実施状況報告書

Development of Highly Selective and Efficient Enzymatic Degradation Catalysis by Immobilizing Protocatechuate 3,4-Dioxygenase in Mesoporous Silica

研究課題

研究課題/領域番号 20K05506
研究機関東京大学

研究代表者

中村 優希  東京大学, 大学院総合文化研究科, 助教 (70732676)

研究期間 (年度) 2021-02-01 – 2024-03-31
キーワードHeterogeneous Catatalyst / Enzyme / Mesoporous Silica / C-C Bond Cleavage / Degradation
研究実績の概要

In this research, an enzyme will be immobilized inside the chemically modified mesoporous silica to enhance both its stability and reactivity. The enzyme of interest in this work is protocatechuate 3,4-dioxygenase, which can selectively cleave a strong C-C bond of catechol aromatic rings.
In year 2021 and 2022, preparation of mesoporous silica and modification of its surface using silane coupling agent were achieved. As a choice of mesoporous silica, SBA-15 was synthesized, instead of MCM-41. This was due to the fact that (1) the protocol of its synthesis was well-established in the Ogura lab, the group where this research was carried out, (2) SBA-15 has a similar pore structure as MCM-41 with controlled pore size, and (3) SBA-15 is known to possess high SiOH density on its surface, which allows the easy surface modification to tune the immobilization interactions between its surface and target enzymes.
The SBA-15 prepared in three different average pore sizes of 8 nm, 10 nm, and 12 nm were subjected to surface modification by silane coupling to obtain the modified SBA-15, m-SBA-15.To prove the stabilizing effect of the unstable enzyme via immobilization into mesoporous silica, a more commonly and widely used enzyme compared to protocatechuate 3,4-dioxygenase, lipase, was immobilized first into m-SBA-15. As a result, the increase in stability of lipase was successfully observed through immobilization into m-SBA-15. Moreover, methods to measure its enzymatic activity and quantification of active lipase were established, and optimized pore size for immobilization was explored.

現在までの達成度 (区分)
現在までの達成度 (区分)

3: やや遅れている

理由

The progress of the research is slightly delayed. This is due to the fact that the synthesis of MCM-41 with large pore size required special techniques, which turned out to be not as straightforward as originally expected. To solve this issue, more suitable choice of mesoporous silica, SBA-15, was selected as a substitute material for its (1) well-established synthetic protocols at Ogura lab, where this research was carried out, (2) similar structure as MCM-41, and (3) high SiOH density on its surface, which allows the easy surface modification to tune the immobilization interactions between its surface and target enzymes.
In addition, immobilization of enzyme into mesoporous silica turned out to require careful handling techniques due to its unstable nature. To establish the proper techniques to treat unstable enzymes, the research project of well-studied lipase was carried out before the immobilization of protocatechuate 3,4-dioxygenase, as indicated in the summary.
Through this approach, acquired protocols for treating lipase can be applied to the immobilization of protocatechuate 3,4-dioxygenase from year 2023, which will result in smooth transition of the research.

今後の研究の推進方策

In year 2023, completion of lipase immobilization project as well as exploration of protocatechuate 3,4-dioxygenase immobilization project will be carried out.
First, immobilized lipase will be utilized to explore its stability and reaction efficiency in details. At the same time, immobilization of protocatechuate 3,4-dioxygenase will be explored by applying the acquired protocols for handling unstable enzymes from the lipase project.
During this transition, adjustment of the established protocols will be examined by optimizing reaction conditions for immobilization of protocatechuate 3,4-dioxygenase, which includes the screening of mesoporous silica as well as silane coupling agents for surface modifications.
Once the protocatechuate 3,4-dioxygenase is successfully immobilized into the right choice of mesoporous silica, the obtained material will be used to explore the degradation reactions of catechol moieties via C-C bond activation of aromatic rings.

次年度使用額が生じた理由

The amount of grant to be used in the next fiscal year in year 2022 was 7,729 yen. This was mainly due to the fact that many of the conferences were held online or hybrid instead of on-site, which reduced the travel expenses to 0 yen.
Also, the fact that I am currently pregnant with a second child made traveling difficult.
In the next fiscal year, more expense is expected to be used as travel expenses.

  • 研究成果

    (10件)

すべて 2023 2022 その他

すべて 雑誌論文 (3件) (うち査読あり 1件、 オープンアクセス 1件) 学会発表 (5件) (うち国際学会 3件、 招待講演 1件) 備考 (2件)

  • [雑誌論文] "Comprehensive understanding of base catalysis derived from nitrogen species incorporated into the frameworks of silica and carbon porous materials"2023

    • 著者名/発表者名
      Kawano, Aisa; Sato, Ayumi; Nakamura, Yuki; Nakayama, Akira; Moteki, Takahiko; Ogura, Masaru
    • 雑誌名

      Journal of Physical Chemistry C

      巻: - ページ: -

    • 査読あり
  • [雑誌論文] 「第29回 ゼオライト夏の学校参加報告」2023

    • 著者名/発表者名
      中村 優希
    • 雑誌名

      Zeolite

      巻: 40(1) ページ: 34-35

    • DOI

      10.20731/zeoraito.40.1.34

  • [雑誌論文] 「『なぜ?』から始まる学術入門 素朴な疑問VS東大『Q12. 消臭剤はどう して悪臭だけを消すの?』」2022

    • 著者名/発表者名
      中村 優希
    • 雑誌名

      The University of Tokyo Magazine, Tansei 淡青

      巻: 45 ページ: 16-17

    • オープンアクセス
  • [学会発表] “Journey to Develop Highly Selective Catalytic Reactions via Difficult Bond Transformations ~From Homogeneous to Heterogeneous Catalysis~”2022

    • 著者名/発表者名
      Yuki Nakamura
    • 学会等名
      MMC もしかする未来の化学 evening webinar
    • 招待講演
  • [学会発表] “Immobilization of Lipase onto Surface-Modified SBA-15”2022

    • 著者名/発表者名
      Yuki Nakamura, Jiashin Ge, Arisa Yamada, Masaru Ogura, and Makoto Onaka
    • 学会等名
      4th International Symposium on Porous Materials 2022
    • 国際学会
  • [学会発表] “Synthesis of zeolite@MOF core-shell particle as the adsorbent for 1,3-butadiene”2022

    • 著者名/発表者名
      Chuang Liu, Yuki Nakamura, Takahiko Moteki, and Masaru Ogura
    • 学会等名
      4th International Symposium on Porous Materials 2022
    • 国際学会
  • [学会発表] “Synthesis of zeolite@MOF composite as an adsorbent for 1,3-butadiene”2022

    • 著者名/発表者名
      Chuang Liu, Yuki Nakamura, Takahiko Moteki, and Masaru Ogura
    • 学会等名
      The 14th Japan-Korea Symposium on Materials and Interfaces
    • 国際学会
  • [学会発表] 「メソポーラスシリカSBA-15の表面修飾と酵素リパーゼの担持」2022

    • 著者名/発表者名
      中村 優希, 葛 家宸, 山田 有紗, 尾中 篤, 小倉 賢
    • 学会等名
      第24回 ゼオライト合同勉強会
  • [備考] 研究内容等紹介 個人webページ

    • URL

      https://ynakamura.c.u-tokyo.ac.jp/

  • [備考] 研究概要紹介 webページ

    • URL

      https://gpes.c.u-tokyo.ac.jp/faculty-staff/materials-systems-and-dynamics/nakamura-yuki.html

URL: 

公開日: 2023-12-25  

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