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2023 年度 実施状況報告書

Stereo-sensitive molecular descriptors for machine learning approach to design of asymmetric catalysts

研究課題

研究課題/領域番号 23K16936
研究機関北海道大学

研究代表者

SIDOROV PAVEL  北海道大学, 化学反応創成研究拠点, 准教授 (30867619)

研究期間 (年度) 2023-04-01 – 2025-03-31
キーワードmachine learning / chemoinfrormatics / molecular descriptors
研究実績の概要

The project is dedicated to the development of novel stereo-sensitive molecular descriptors and their application in modeling the selectivity of catalysts in chemical reactions. During last year, the initial developments of such representations have been undertaken, based on the established chemical libraries. By adding the stereochemical marking into the structure representation, we were able to computationally distinguish compounds of different stereochemistry, which is currently unavailable via other informatics-based libraries. The developments and some applications were published in a journal (Chemistry - A European Journal) and presented in domestic and international conferences (8th Nara School on Chemoinformatics, Nov 2023).

現在までの達成度 (区分)
現在までの達成度 (区分)

2: おおむね順調に進展している

理由

Currently, the novel stereo-sensitive representations are undergoing the benchmark on in-house data provided by the collaborators in WPI-ICReDD. Further developments for the refinement of codebase and addition of new features are ongoing.

今後の研究の推進方策

This year, the application of the new representation to modeling the selectivity of catalysts will be the main focus of the project. The in-house data obtained from the collaborators in WPI-ICReDD will be used as the center of the study. Mukaiyama reaction is the focus of the dataset and represents a challenge for modeling due to the presence of several stereo centers, which cannot be treated with a simple approach. Furthermore, the type of catalysts that is used in this study requires additional care, as it possesses a special type of stereocenter (axial chirality) that cannot be managed with past approaches. With our new representation, we aim to design a new potent catalyst for this reaction and validate it experimentally as the final goal.

次年度使用額が生じた理由

The budget was not currently used for the generation of in-house data, as the collaborators have produced their experimental data internally. The remaining budget will be used in FY2024 to perform additional experiments (including the recruitment of a temporary research assistant), as well as publication in open-access for dissemination of the study results.

  • 研究成果

    (3件)

すべて 2023

すべて 雑誌論文 (1件) (うち査読あり 1件) 学会発表 (2件) (うち国際学会 2件、 招待講演 1件)

  • [雑誌論文] A Primer on 2D Descriptors in Selectivity Modeling for Asymmetric Catalysis2023

    • 著者名/発表者名
      Sidorov Pavel、Tsuji Nobuya
    • 雑誌名

      Chemistry - A European Journal

      巻: 30 ページ: e202302837

    • DOI

      10.1002/chem.202302837

    • 査読あり
  • [学会発表] Fragment descriptors for prediction of enantioselectivity in asymmetric catalysis2023

    • 著者名/発表者名
      Sidorov Pavel
    • 学会等名
      List Sustainable Digital Transformation Catalyst Collaboration Research Platform Kickoff Symposium
    • 国際学会 / 招待講演
  • [学会発表] Predicting highly enantioselective catalysts using machine learning2023

    • 著者名/発表者名
      Sidorov Pavel
    • 学会等名
      8th Autumn School of Chemoinformatics in Nara
    • 国際学会

URL: 

公開日: 2024-12-25  

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