Neo-virology: the raison d'etre of viruses

2020 Fiscal Year Annual Research Report

• Project Area: Neo-virology: the raison d'etre of viruses
• Project/Area Number: 16H06429
• Research Institution: The University of Tokyo
• Principal Investigator: 河岡 義裕 東京大学, 医科学研究所, 特任教授 (70135838)
• Co-Investigator(Kenkyū-buntansha): 朝長 啓造 京都大学, ウイルス・再生医科学研究所, 教授 (10301920) ; 澤 洋文 北海道大学, 人獣共通感染症国際共同研究所, 教授 (30292006) ; 松浦 善治 大阪大学, 微生物病研究所, 特任教授(常勤) (50157252) ; 川口 寧 東京大学, 医科学研究所, 教授 (60292984) ; 渡辺 登喜子 大阪大学, 微生物病研究所, 教授 (60557479) ; 鈴木 信弘 岡山大学, 資源植物科学研究所, 教授 (70206514) ; 高橋 英樹 東北大学, 農学研究科, 教授 (20197164) ; 長崎 慶三 高知大学, 教育研究部自然科学系理工学部門, 教授 (00222175) ; 川野 秀一 電気通信大学, 大学院情報理工学研究科, 准教授 (50611448)
• Project Period (FY): 2016-06-30 – 2021-03-31
• Keywords: ウイルス / 宿主との共生 / 生態

Outline of Annual Research Achievements

（１）計画・公募研究の推進：計画・公募研究を、研究活動支援システム、領域班会議などを通じて積極的にサポートし、計画研究とともにネオウイルス学創成に目がけた研究を推進している。高度情報処理支援として、計画研究班と公募研究班に対して、スーパーコンピュータシステム・シロカネの高速処理体制を構築するとともに、データ解析プログラムの連携・共有、コミュニケーションツールslackを用いたシロカネと解析プログラムの情報共有を行った。また本領域の最終年度ということで、各班で収集したサンプルのデータ解析などの積極的な支援を行い、研究成果の取りまとめを進めた。
（２）領域班会議の開催：2020年度は、新型コロナウイルス感染症パンデミックのため、２０２０年5月末に兵庫県淡路島において企画していた領域班会議は中止となった。２０２１年１月２２日、２５日、26日の３日間にわたり、第８回領域班会議をZoom Webinarによって開催し、各計画・公募研究班による未発表データを含めた進捗報告を行った。会議では、活発な議論が展開され、領域内の研究者間の有機的な連携が強化された。また２０２１年１０月１日に第１２回総括班会議をZoomで行い、本領域の取りまとめ、および成果の発信方法について話し合いを行なった。
（３）広報活動：本領域の研究活動を国民に広く発信するため、ホームページ/フェイスブックページ/ツイッターにおいて、領域活動に関する記事を公開した。フェイスブックページとツイッターフォロワー数は数百名に上る。また一般向けに集英社より「ネオウイルス学」を刊行した。

Research Progress Status

令和2年度が最終年度であるため、記入しない。

Strategy for Future Research Activity

令和2年度が最終年度であるため、記入しない。

Research Products

• [Int'l Joint Research] ウイスコンシン大学/ハーバード大学/ミネソタ大学(米国)
  • Country Name: U.S.A.
  • Counterpart Institution: ウイスコンシン大学/ハーバード大学/ミネソタ大学
  • # of Other Institutions: 17
• [Int'l Joint Research] グラスゴー大学/Oxford University/Imperial College of London(英国)
  • Country Name: UNITED KINGDOM
  • Counterpart Institution: グラスゴー大学/Oxford University/Imperial College of London
  • # of Other Institutions: 1
• [Int'l Joint Research] ウルム大学/マックスプランク研究所/ヨーロッパ分子生物研究所(ドイツ)
  • Country Name: GERMANY
  • Counterpart Institution: ウルム大学/マックスプランク研究所/ヨーロッパ分子生物研究所
  • # of Other Institutions: 3
• [Int'l Joint Research] パスツール研究所/INSERM/ボルドー大(フランス)
  • Country Name: FRANCE
  • Counterpart Institution: パスツール研究所/INSERM/ボルドー大
  • # of Other Institutions: 1
• [Int'l Joint Research] マドリード大学/Institute of Marine Sciences (ICM), CSIC(スペイン)
  • Country Name: SPAIN
  • Counterpart Institution: マドリード大学/Institute of Marine Sciences (ICM), CSIC
• [Int'l Joint Research]
  • # of Other Countries: 18
• [Journal Article] A quantitative model used to compare within-host SARS-CoV-2, MERS-CoV and SARS-CoV dynamics provides insights into the pathogenesis and treatment of SARS-CoV-2 (2021)
  • Author(s): K.S. Kim, K. Ejima, S. Iwanami, Y. Fujita, H. Ohashi, Y. Koizumi, Y. Asai, S. Nakaoka, K. Watashi, K. Aihara, R.N. Thompson, R. Ke, A.S. Perelson‡ and S. Iwami.
  • Journal Title: PLOS Biology Volume: 19 Pages: e3001128
  • DOI: 10.1371/journal.pbio.3001128
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] Novel modulators of p53-signaling encoded by unknown genes of emerging viruses. (2021)
  • Author(s): Alzhanova D, Corcoran K, Bailey AG, Long K, Taft-Benz S, Graham RL, Broussard GS, Heise M, Neumann G, Halfmann P, Kawaoka Y, Baric RS, Damania B, Dittmer DP
  • Journal Title: PLoS Pathog Volume: 17(1) Pages: e1009033
  • DOI: 10.1371/journal.ppat.1009033.
  • Peer Reviewed
• [Journal Article] Priming for enhanced ARGONAUTE2 activation accompanies induced resistance to cucumber mosaic virus in Arabidopsis thaliana. (2021)
  • Author(s): Ando S, Jaskiewicz M, Mochizuki S, Koseki S, Miyashita S, Takahashi H, Conrath U
  • Journal Title: Molecular Plant Pathology Volume: 22 Pages: 19-30
  • DOI: 10.1111/mpp.13005
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] HIV-1 tracing method of systemic viremia in vivo using an artificially mutated virus pool (2021)
  • Author(s): Andrew Soper, Yoshio Koyanagi, Kei Sato
  • Journal Title: Microbiology and Immunology Volume: 65 Pages: 17_27
  • DOI: 10.1111/1348-0421.12862
  • Peer Reviewed
• [Journal Article] A moderate level of hypovirulence conferred by a hypovirus in the avocado white root rot fungus, Rosellinia necatrix. (2021)
  • Author(s): Arjona-Lpez, J. M., Telengech, P., Suzuki, N., and Lpez-Herrera, C.
  • Journal Title: Fungal Biology Volume: 125 Pages: 69-76
  • DOI: 10.1016/j.funbio.2020.10.007
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] Identification of an RNA silencing suppressor encoded by a symptomless fungal hypovirus, Cryphonectria hypovirus 4. (2021)
  • Author(s): Aulia, A., Hyodo, K., Hisano, S., Kondo, H., I. B., Hillman, B. I., and Suzuki, N.
  • Journal Title: Biology (Basel) Volume: 10 Pages: 100
  • DOI: 10.3390/biology10020100
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] A persistent giant algal virus, with a unique morphology, encodes an unprecedented number of genes involved in energy metabolism. (2021)
  • Author(s): Blanc-Mathieu R, Dahle H, Hofgaard A, Brandt D, Ban H, Kalinowski J, Ogata H, Sandaa RA
  • Journal Title: J Virol Volume: 3 Pages: 02446-20
  • DOI: 10.1128/JVI.02446-20
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck. (2021)
  • Author(s): Braun KM, Moreno GK, Halfmann PJ, Hodcroft EB, Baker DA, Boehm EC, Weiler AM, Haj AK, Hatta M, Chiba S, Maemura T, Kawaoka Y, Koelle K, O'Connor DH, Friedrich TC
  • Journal Title: PLoS Pathog Volume: 17(2) Pages: e1009373
  • DOI: 10.1101/2020.11.16.384917.
  • Peer Reviewed
• [Journal Article] Structure of dsRNA Mycoviruses. (2021)
  • Author(s): Caston, J. R., Suzuki, N., and Ghabrial, S. A.
  • Journal Title: Encyclopedia of Virology 4th Edition (Ed. D. Bamford & M. Zuckerman). Volume: 4 Pages: 504-512
  • DOI: 10.1016/B978-0-12-809633-8.21275-2
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] Molecular identification and genetic characterization of tick-borne pathogens in sheep and goats at two farms in the central and southern regions of Malawi. (2021)
  • Author(s): Chatanga E, Kainga H, Maganga E, Hayashida K, Katakura K, Sugimoto C, Nonaka N, Nakao R
  • Journal Title: Ticks Tick Borne Dis Volume: 12 Pages: 101629
  • DOI: 10.1016/j.ttbdis.2020.101629
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] Molecular detection and characterization of tick-borne hemoparasites and Anaplasmataceae in dogs in major cities of Malawi. (2021)
  • Author(s): Chatanga E, Kainga H, Razemba T, Ssuna R, Swennen L, Hayashida K, Sugimoto C, Katakura K, Nonaka N, Nakao R
  • Journal Title: Parasitol Res Volume: 120 Pages: 267-276
  • DOI: 10.1007/s00436-020-06967-y
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] Protective Immunity and Persistent Lung Sequelae in Domestic Cats after SARS-CoV-2 Infection. (2021)
  • Author(s): Chiba S, Halfmann PJ, Hatta M, Maemura T, Fan S, Armbrust T, Swartley OM, Crawford LK, Kawaoka Y
  • Journal Title: Emerg Infect Dis Volume: 27(2) Pages: 660-663
  • DOI: 10.3201/eid2702.203884.
  • Peer Reviewed
• [Journal Article] Discovery of divided RdRp sequences and a hitherto unknown genomic complexity in fungal viruses. (2021)
  • Author(s): Chiba Y, Oiki S, Yaguchi T, Urayama S, Hagiwara D
  • Journal Title: Virus evolution Volume: 7 Pages: veaa101
  • DOI: 10.1093/ve/veaa101
  • Peer Reviewed / Open Access
• [Journal Article] Yado-kari virus 1 and yado-nushi virus 1 (Unassigned). (2021)
  • Author(s): Das, S. and Suzuki, N.
  • Journal Title: Encyclopedia of Virology 4th Edition (Ed. D. Bamford & M. Zuckerman). Volume: 4 Pages: 658-663
  • DOI: 10.1016/B978-0-12-814515-9.20949-1
  • Peer Reviewed
• [Journal Article] Modeling SARS-CoV-2 infection and its individual differences with ACE2-expressing human iPS cells (2021)
  • Author(s): E Sano, S Deguchi, A Sakamoto, N Mimura, A Hirabayashi, Y Muramoto, T Noda, T Yamamoto, K Takayama
  • Journal Title: iScience Volume: - Pages: -
  • DOI: 10.1016/j.isci.2021.102428
  • Peer Reviewed / Open Access
• [Journal Article] Identifying Potentially Beneficial Genetic Mutations Associated with Monophyletic Selective Sweep and a Proof-of-Concept Study with Viral Genetic Data (2021)
  • Author(s): Furuse Y
  • Journal Title: mSystems Volume: 6 Pages: e01151-20
  • DOI: 10.1128/mSystems.01151-20.
  • Peer Reviewed
• [Journal Article] SARS-CoV-2 Infection Severity Is Linked to Superior Humoral Immunity against the Spike. (2021)
  • Author(s): Guthmiller JJ, Stovicek O, Wang J, Changrob S, Li L, Halfmann P, Zheng NY, Utset H, Stamper CT, Dugan HL, Miller WD, Huang M, Dai YN, Nelson CA, Hall PD, Jansen M, Shanmugarajah K, Donington JS, Krammer F, Fremont DH, Joachimiak A, Kawaoka Y, Tesic V, Madariaga ML, Wilson PC
  • Journal Title: mBio Volume: 12(1) Pages: e02940-20
  • DOI: 10.1101/2020.09.12.294066.
  • Peer Reviewed
• [Journal Article] Potential anti-COVID-19 agents, Cepharanthine and Nelfinavir, and their usage for combination treatment (2021)
  • Author(s): H Ohashi, K Watashi, W Saso, K Shionoya, S Iwanami, T Hirokawa, T Shirai, S Kanaya, Y Ito, KS Kim, T Nomura, T Suzuki, K Nishioka, S Ando, K Ejima, Y Koizumi, T Tanaka, S Aoki, K Kuramochi, T Suzuki, T Hashiguchi, K Maenaka, T Matano, M Muramatsu, M Saijo, K Aihara, S Iwami, M Takeda, JA McKeating, T Wakita.
  • Journal Title: iScience Volume: 42 Pages: 335-337
  • DOI: 10.1016/j.isci.2021.102367
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] An African tick flavivirus forming an independent clade exhibits unique exoribonuclease-resistant RNA structures in the genomic 3'-untranslated region (2021)
  • Author(s): Harima H, Orba Y, Torii S, Qiu Y, Kajihara M, Eto Y, Matsuta N, Hang'ombe BM, Eshita Y, Uemura K, Matsuno K, Sasaki M, Yoshii K, Nakao R, Hall WW, Takada A, Abe T, Wolfinger MT, Simuunza M, Sawa H.
  • Journal Title: Sci Rep Volume: 11(1) Pages: 4883
  • DOI: 10.1038/s41598-021-84365-9.
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Dianthovirus (Tombusviridae). (2021)
  • Author(s): Hyodo, K., Kaido, M.
  • Journal Title: Encyclopedia of Virology 4th Edition (Ed. D. Bamford & M. Zuckerman). Volume: 4 Pages: 383-387
  • DOI: 10.1016/B978-0-12-809633-8.21263-6
  • Peer Reviewed
• [Journal Article] Characterization of microRNAs expressed in the cystic legion of the liver of Mus musculus perorally infected with Echinococcus multilocularis Nemuro strain. (2021)
  • Author(s): Imasato Y, Nakao R, Irie T, Kouguchi H, Yagi K, Nariaki N, Katakura K
  • Journal Title: Parasitol Int Volume: 81 Pages: 102247
  • DOI: 10.1016/j.parint.2020.102247
  • Peer Reviewed
• [Journal Article] Direct evidence of abortive lytic infection-mediated establishment of Epstein-Barr virus latency during B-cell infection (2021)
  • Author(s): Inagaki T, Sato Y, Ito J, Takaki M, Okuno Y, Yaguchi M, Masud MHAA, Watanabe T, Sato K, Iwami S, MurataT, Kimura H
  • Journal Title: Frontiers in Microbiology Volume: 11 Pages: 575255
  • DOI: 10.3389/fmicb.2020.575255
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Identification of novel avian and mammalian deltaviruses provides new insights into deltavirus evolution. (2021)
  • Author(s): Iwamoto M, Shibata Y, Kawasaki J, Kojima S, Li YT, Iwami S, Muramatsu M, Wu HL, Wada K,_Tomonaga K, Watashi K, Horie M.
  • Journal Title: Virus Evol Volume: 7 Pages: veab003.
  • DOI: 10.1093/ve/veab003
  • Peer Reviewed
• [Journal Article] One hundred million years history of bornavirus infections hidden in vertebrate genomes (2021)
  • Author(s): Junna Kawasaki, Shohei Kojima, Yahiro Mukai, Keizo Tomonaga, Masayuki Horie
  • Journal Title: Proceedings of the National Academy of Sciences of the United States of America Volume: - Pages: -
  • DOI: 10.1101/2020.12.02.408005
  • Peer Reviewed
• [Journal Article] Reverse Genetics Approach for Developing Rotavirus Vaccine Candidates Carrying VP4 and VP7 Genes Cloned from Clinical Isolates of Human Rotavirus (2021)
  • Author(s): Kanai Y, Onishi M, Kawagishi T, Pimfhun P, Nurdin J, Nouda R, Yamasaki M, Tina L, Pattara K, Okitsu S, Hayakawa S, Ebina H, Ushijima H, Kobayashi T
  • Journal Title: Journal of Virology Volume: 95 Pages: e01374-20
  • DOI: 10.1128/JVI.01374-20
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] The battle between viruses and APOBEC3 genes: its past and present (2021)
  • Author(s): Keiya Uriu, Yusuke Kosugi, Jumpei Ito, Kei Sato
  • Journal Title: Viruses Volume: 13 Pages: 124
  • DOI: 10.3390/v13010124
  • Peer Reviewed / Open Access
• [Journal Article] Sarbecovirus ORF6 proteins hamper the induction of interferon signaling (2021)
  • Author(s): Kimura I, Konno Y, Uriu K, Hopfensperge K, Sauter D, Nakagawa S, Sato K
  • Journal Title: Cell Reports Volume: 34 Pages: 108916
  • DOI: 10.1016/j.celrep.2021.108916
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Polymeric Pathogen-Like Particles-Based Combination Adjuvants Elicit Potent Mucosal T Cell Immunity to Influenza A Virus. (2021)
  • Author(s): Kingstad-Bakke B, Toy R, Lee W, Pradhan P, Vogel G, Marinaik CB, Larsen A, Gates D, Luu T, Pandey B, Kawaoka Y, Roy K, Suresh M
  • Journal Title: Front Immunol Volume: 11 Pages: 559382
  • DOI: 10.3389/fimmu.2020.559382
  • Peer Reviewed
• [Journal Article] Mastomys natalensis is a possible natural rodent reservoir for encephalomyocarditis virus (2021)
  • Author(s): Kishimoto M, Hang'ombe BM, Hall WW, Orba Y, Sawa H, Sasaki M.
  • Journal Title: J Gen Virol Volume: 102(3) Pages: -
  • DOI: 10.1099/jgv.0.001564
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] TMPRSS11D and TMPRSS13 Activate the SARS-CoV-2 Spike Protein (2021)
  • Author(s): Kishimoto M, Uemura K, Sanaki T, Sato A, Hall WW, Kariwa H, Orba Y, Sawa H, Sasaki M.
  • Journal Title: Viruses Volume: 13(3) Pages: 384
  • DOI: 10.3390/v13030384.
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria (2021)
  • Author(s): Koji Yahara, Masato Suzuki, Aki Hirabayashi, Wataru Suda, Masahira Hattori, Yutaka Suzuki, Yusuke Okazaki
  • Journal Title: Nature Communications Volume: 12(1):27 Pages: -
  • DOI: 10.1038/s41467-020-20199-9
  • Peer Reviewed / Open Access
• [Journal Article] Virus-like insertions with sequence signatures similar to those of endogenous non-retroviral RNA viruses in the human genome. (2021)
  • Author(s): Kojima S, Yoshikawa K, Ito J, Nakagawa S, Parrish NF, Horie M, Kawano S, Tomonaga K.
  • Journal Title: Proceedings of the National Academy of Sciences of the United States of America Volume: 118 Pages: e2010758118
  • DOI: 10.1073/pnas.2010758118
  • Peer Reviewed
• [Journal Article] Virus-like insertions with sequence signatures similar to those of endogenous nonretroviral RNA viruses in the human genome. (2021)
  • Author(s): Kojima S, Yoshikawa K, Ito J, Nakagawa S, Parrish NF, Horie M, Kawano S, Tomonaga K.
  • Journal Title: Proc Natl Acad Sci U S A. Volume: 118 Pages: e2010758118
  • DOI: 10.1073/pnas.2010758118.
  • Peer Reviewed
• [Journal Article] Quadriviruses (Quadriviridae). (2021)
  • Author(s): Kondo, H., Caston, J. R., and Suzuki, N.
  • Journal Title: Encyclopedia of Virology 4th Edition (Ed. D. Bamford & M. Zuckerman). Volume: 4 Pages: 642-647
  • DOI: 10.1016/B978-0-12-814515-9.20948-X
  • Peer Reviewed
• [Journal Article] Plasticity of the Influenza Virus H5 HA Protein. (2021)
  • Author(s): Kong H, Burke DF, da Silva Lopes TJ, Takada K, Imai M, Zhong G, Hatta M, Fan S, Chiba S, Smith D, Neumann G, Kawaoka Y
  • Journal Title: mBio Volume: 12(1) Pages: e03324-20
  • DOI: 10.1128/mBio.03324-20.
  • Peer Reviewed
• [Journal Article] Role of Epstein_Barr Virus C Promoter Deletion in Diffuse Large B Cell Lymphoma (2021)
  • Author(s): Mabuchi S, Hijioka F,Watanabe T, Yanagi Y, Okuno Y, Masud MHAA, Sato Y, Murata T, Kimura H
  • Journal Title: Cancers Volume: 13 Pages: 561
  • DOI: 10.3390/cancers13030561
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Protective Face Mask Filter Capable of Inactivating SARS-CoV-2, and Methicillin-Resistant Staphylococcus aureus and Staphylococcus epidermidis. (2021)
  • Author(s): Mart M, Tu n-Molina A, Aachmann FL, Muramoto Y, Noda T, Takayama K, Serrano-Aroca.
  • Journal Title: Polymers Volume: 13 Pages: 207
  • DOI: 10.3390/polym13020207.
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] Identification of novel avian and mammalian deltaviruses provides new insights into deltavirus evolution (2021)
  • Author(s): Masashi Iwamoto, Yukino Shibata, Junna Kawasaki, Shohei Kojima, Yung-Tsung Li, Shingo Iwami, Masamichi Muramatsu, Hui-Lin Wu, Kazuhiro Wada, Keizo Tomonaga, Koichi Watashi, Masayuki Horie
  • Journal Title: Virus Evolution Volume: 7 Pages: veab003
  • DOI: 10.1093/ve/veab003
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Identification of a reptile lyssavirus in Anolis allogus provided novel insights into lyssavirus evolution (2021)
  • Author(s): Masayuki Horie, Hiroshi Akashi, Masakado Kawata, Keizo Tomonaga
  • Journal Title: Virus Genes Volume: 57 Pages: 40-49
  • DOI: 10.1007/s11262-020-01803-y
  • Peer Reviewed
• [Journal Article] Nanopore direct RNA sequencing detects DUX4-activated repeats and isoforms in human muscle cells (2021)
  • Author(s): Mitsuhashi S, Nakagawa S, Sasaki-Honda M, Sakurai H, Frith MC, Mitsuhashi H
  • Journal Title: Human Molecular Genetics Volume: - Pages: -
  • DOI: 10.1093/hmg/ddab063
  • Peer Reviewed / Open Access
• [Journal Article] Exploring Prokaryotic and Eukaryotic Microbiomes Helps in Detecting Tick-Borne Infectious Agents in the Blood of Camels. (2021)
  • Author(s): Mohamed WMA, Ali AO, Mahmoud HYAH, Omar MA, Chatanga E, Salim B, Naguib D, Anders JL, Nonaka N, Moustafa MAM, Nakao R
  • Journal Title: Pathogens Volume: 10 Pages: 351
  • DOI: 10.3390/pathogens10030351
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Anthropogenic interferences lead to gut microbiome dysbiosis in Asian elephants and may alter adaptation processes to surrounding environments. (2021)
  • Author(s): Moustafa MAM, Chel HM, Thu MJ, Bawm S, Htun LL, Win MM, Oo ZM, Ohsawa N, Lahdenper M, Mohamed WMA, Ito K, Nonaka N, Nakao R, Katakura K
  • Journal Title: Sci Rep Volume: 11 Pages: 741
  • DOI: 10.1038/s41598-020-80537-1
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Expression of ERV3-1 in leukocytes of acute myelogenous leukemia patients (2021)
  • Author(s): Nakagawa S, Kawashima M, Miyatake Y, Kudo K, Kotaki R, Ando K, Kotani A.
  • Journal Title: Gene Volume: 773 Pages: 145363
  • DOI: 10.1016/j.gene.2020.145363
  • Peer Reviewed
• [Journal Article] Amblyomma testudinarium infestation on a brown bear (Ursus arctos yesoensis) captured in Hokkaido, a northern island of Japan. (2021)
  • Author(s): Nakao R, Shinjo K, Sakiyama T, Ogata S, Kusakisako K, Kinoshita G, Naguib D, Chatanga E, Mohamed WMA, Moustafa MAM, Matsuno K, Ito T, Nonaka N, Sashika M, Tsubota T, Shimozuru M
  • Journal Title: Parasitol Int Volume: 80 Pages: 102209
  • DOI: 10.1016/j.parint.2020.102209
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] Selective Genome Packaging Mechanisms of Influenza A Viruses. (2021)
  • Author(s): Noda T
  • Journal Title: Cold Spring Harb Perspect Med Volume: - Pages: -
  • DOI: 10.1101/cshperspect.a038497.
  • Peer Reviewed
• [Journal Article] Cryo-EM Structure of the Prostaglandin E Receptor EP4 Coupled to G Protein. (2021)
  • Author(s): Nojima S, Fujita Y, Kimura KT, Nomura N, Suno R, Morimoto K, Yamamoto M, Noda T, Iwata S, Shigematsu H, Kobayashi T.
  • Journal Title: Structure Volume: 29 Pages: 252-260
  • DOI: 10.1016/j.str.2020.11.007.
  • Peer Reviewed
• [Journal Article] Spiroplasma Infection among Ixodid Ticks Exhibits Species Dependence and Suggests a Vertical Pattern of Transmission. (2021)
  • Author(s): Ogata S, Mohamed WMA, Kusakisako K, Thu MJ, Qiu Y, Moustafa MAM, Matsuno K, Katakura K, Nonaka N, Nakao R
  • Journal Title: Microorganisms Volume: 9 Pages: 333
  • DOI: 10.3390/microorganisms9020333
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• [Journal Article] Antigenic variants of influenza B viruses isolated in Japan during the 2017‐2018 and 2018‐2019 influenza seasons. (2020)
  • Author(s): Kato-Miyashita, S, Sakai-Tagawa Y, Yamashita M, Iwatsuki-Horimoto K, Ito M, Tokita A, Hagiwara H, Izumida N, Nishino T, Wada N, Koga M, Adachi E, Jubishi D, Yotsuyanagi H, kawaoka Y, Imai M
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• [Journal Article] Generation of Genetically RGD σ1-Modified Oncolytic Reovirus That Enhances JAM-A-Independent Infection of Tumor Cells (2020)
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  • Journal Title: Journal of Virology Volume: 94 Pages: e01703-20
  • DOI: 10.1128/JVI.01703-20
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• [Journal Article] Phylogenies from mitochondrial genomes of 120 species of ticks: Insights into the evolution of the families of ticks and of the genus Amblyomma. (2020)
  • Author(s): Kelava S, Mans BJ, Shao R, Moustafa MAM, Matsuno K, Takano A, Kawabata H, Sato K, Fujita H, Ze C, Plantard O, Hornok S, Gao S, Barker D, Barker SC, Nakao R
  • Journal Title: Ticks Tick Borne Dis Volume: 12 Pages: 101577
  • DOI: 10.1016/j.ttbdis.2020.101577
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• [Journal Article] Modeling Borna Disease Virus_In Vitro_Spread Reveals the Mode of Antiviral Effect Conferred by an Endogenous Bornavirus-Like Element. (2020)
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  • DOI: 10.1128/JVI.01204-20
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• [Journal Article] Triple combination therapy of favipiravir plus two monoclonal antibodies eradicates influenza virus from nude mice. (2020)
  • Author(s): Kiso M, Yamayoshi S, Kawaoka Y
  • Journal Title: Commun Biol Volume: 3(1) Pages: 219
  • DOI: 10.1038/s42003-020-0952-y
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• [Journal Article] Baloxavir marboxil treatment of nude mice infected with influenza A virus. (2020)
  • Author(s): Kiso M, Yamayoshi S, Murakami J, Kawaoka Y
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  • DOI: 10.1093/infdis/jiz665.
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• [Journal Article] Production of high-titer transmission-defective RNA virus-based episomal vector using tangential flow filtration (2020)
  • Author(s): Komatsu Y, Kakuya Y, Tomonaga K.
  • Journal Title: Microbiol Immunol Volume: 64 Pages: 602-609
  • DOI: 10.1111/1348-0421.12831.
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• [Journal Article] In vivo biodistribution analysis of transmission competent and defective RNA virus-based episomal vector. (2020)
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  • Journal Title: Sci Rep. Volume: 10 Pages: 5890
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• [Journal Article] Reverse genetics approaches of Borna disease virus: applications in development of viral vectors and preventive vaccines. (2020)
  • Author(s): Komatsu Y, Tomonaga K.
  • Journal Title: Curr Opin Virol Volume: 44 Pages: 42-48
  • DOI: 10.1016/j.coviro.2020.05.011.
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• [Journal Article] Evolutionary Selection of the Nuclear Localization Signal in the Viral Nucleoprotein Leads to Host Adaptation of the Genus Orthobornavirus (2020)
  • Author(s): Komorizono R, Sassa Y, Horie M, Makino A, Tomonaga K.
  • Journal Title: Viruses Volume: 12 Pages: 1291
  • DOI: 10.3390/v12111291.
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• [Journal Article] Virome analysis of aphid populations that infest the barley field: the discovery of two novel groups of nege/kita-like viruses and other novel RNA viruses. (2020)
  • Author(s): Kondo, H., Fujita, M., Hisano, H., Hyodo, K., Andika I. B., and Suzuki, N.
  • Journal Title: Frontiers in Microbiology Volume: 11 Pages: 509
  • DOI: 10.3389/fmicb.2020.00509
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] SARS-CoV-2 ORF3b is a potent interferon antagonist whose activity is increased by a naturally occuring elogation variant (2020)
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  • Journal Title: Cell Rep Volume: 32 Pages: 108185
  • DOI: 10.1016/j.celrep.2020.108185
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• [Journal Article] Sequence Compression Benchmark (SCB) database - A comprehensive evaluation of reference-free compressors for FASTA-formatted sequences (2020)
  • Author(s): Kryukov, K., Ueda, M.T., Nakagawa, S. and Imanishi, T.
  • Journal Title: GigaScience Volume: 9 Pages: giaa072
  • DOI: 10.1093/gigascience/giaa072
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• [Journal Article] Disturbance of floral colour pattern by activation of an endogenous pararetrovirus, petunia vein clearing virus, in aged petunia plants. (2020)
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  • Journal Title: Plant Journal Volume: 103 Pages: 497-511
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• [Journal Article] HER2-mediated enhancement of Ebola virus entry. (2020)
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• [Journal Article] Identification of interferon-stimulated genes that attenuate Ebola virus infection. (2020)
  • Author(s): Kuroda M, Halfmann PJ, Hill-Batorski L, Ozawa M, Lopes TJS, Neumann G, Schoggins JW, Rice CM, Kawaoka Y
  • Journal Title: Nat Commun Volume: 11(1) Pages: 2953
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• [Journal Article] G Protein Pathway Suppressor 1 Promotes Influenza Virus Polymerase Activity by Activating the NF-κB Signaling Pathway. (2020)
  • Author(s): Kuwahara T, Yamayoshi S, Noda T, Kawaoka Y
  • Journal Title: Mbio Volume: 10 Pages: e02867-19
  • DOI: 10.1128/mBio.02867-19
  • Peer Reviewed
• [Journal Article] Phosphoregulation of a conserved herpesvirus tegument protein by a virally encoded protein kinase in viral pathogenicity and potential linkage between its evolution and viral phylogeny. (2020)
  • Author(s): M. Shibazaki, A. Kato, K. Takeshima, J. Ito, M. Suganami, N. Koyanagi, Y. Maruzuru, K. Sato and Y. Kawaguchi.
  • Journal Title: J. Virol. Volume: 94 Pages: e01055-20
  • DOI: 10.1128/JVI.01055-20
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• [Journal Article] High Levels of miR-483-3p Are Present in Serum Exosomes Upon Infection of Mice With Highly Pathogenic Avian Influenza Virus. (2020)
  • Author(s): Maemura T, Fukuyama S, Kawaoka Y
  • Journal Title: Front Microbiol Volume: 11 Pages: 144
  • DOI: 10.3389/fmicb.2020.00144
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• [Journal Article] Programming Multifaceted Pulmonary T Cell Immunity by Combination Adjuvants. (2020)
  • Author(s): Marinaik CB, Kingstad-Bakke B, Lee W, Hatta M, Sonsalla M, Larsen A, Neldner B, Gasper DJ, Kedl RM, Kawaoka Y, Suresh M
  • Journal Title: Cell Rep Med Volume: 1 Pages: 100095
  • DOI: 10.1016/j.xcrm.2020.100095.
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• [Journal Article] Characterizing Emerging Canine H3 Influenza Viruses. (2020)
  • Author(s): Martinez-Sobrido L, Blanco-Lobo P, Rodriguez L, Fitzgerald T, Zhang H, et al
  • Journal Title: PLoS Pathog Volume: 16 Pages: e1008409
  • DOI: 10.1371/journal.ppat.1008409
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• [Journal Article] Structure and assembly of double-stranded RNA mycovirus. (2020)
  • Author(s): Mata, C. P., Rodr guez, J. M., Suzuki, N., and Caston, J. R.
  • Journal Title: Advances in Virus Research Volume: 108 Pages: 213-247
  • DOI: 10.1016/bs.aivir.2020.08.001
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] Radioligand Assay-Based Detection of Antibodies against SARS-CoV-2 in Hospital Workers Treating Patients with Severe COVID-19 in Japan. (2020)
  • Author(s): Matsunaga H, Makino A, Kato Y, Murakami T, Yamaguchi Y, Kumanogoh A, Oba Y, Fujimi S, Honda T, Tomonaga K.
  • Journal Title: Viruses Volume: 13 Pages: -
  • DOI: 10.3390/v13020347
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• [Journal Article] Comparison of the Pathogenicity in Mice of A(H1N1)pdm09 Viruses Isolated between 2009 and 2015 in Japan. (2020)
  • Author(s): Mitake H, Yasuhara A, Lopes TJS, Tagawa-Sakai Y, Shimizu K, Ozawa H, Kawakami C, Morikawa S, Sugaya N, Watanabe T, Kawaoka Y
  • Journal Title: Viruses Volume: 12(2) Pages: pii: E155
  • DOI: 10.3390/v12020155.
  • Peer Reviewed
• [Journal Article] Lipoteichoic acid is involved in the ability of the immunobiotic strain Lactobacillus plantarum CRL1506 to modulatethe intestinal antiviral innate immunity triggered by TLR3 activation. (2020)
  • Author(s): Mizuno H, Arce L, Tomotsune K, Albarracin L, Funabashi R, Vera D, Islam MA, Vizoso-Pinto MG, Takahashi H, Sasaki Y, Kitazawa H, Villena J
  • Journal Title: Frontiers in Immunology Volume: 11 Pages: Artcle 571
  • DOI: 10.3389/fimmu.2020.00571
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• [Journal Article] Exopolysaccharides from Streptococcus thermophilus ST538 modulate the antiviral innate immune response in porcine intestinal epitheliocytes. (2020)
  • Author(s): Mizuno H, Tomotsune K, Islam MA, Funabashi R, Albarracin L, Ikeda-Ohtsubo W, Aso H, Takahashi H, Kimura K, Villena J, Sasaki Y, Kitazawa H
  • Journal Title: Frontiers in Microbiology Volume: 11 Pages: Article 894
  • DOI: 10.3389/fmicb.2020.00894
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• [Journal Article] Revealing fine-scale spatiotemporal differences in SARS-CoV-2 introduction and spread. (2020)
  • Author(s): Moreno GK, Braun KM, Riemersma KK, Martin MA, Halfmann PJ, Crooks CM, Prall T, Baker D, Baczenas JJ, Heffron AS, Ramuta M, Khubbar M, Weiler AM, Accola MA, Rehrauer WM, O'Connor SL, Safdar N, Pepperell CS, Dasu T, Bhattacharyya S, Kawaoka Y, Koelle K, O'Connor DH, Friedrich TC
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• [Journal Article] Capsid structure of a marine algal virus of the order Picornavirales. (2020)
  • Author(s): Munke A, Kimura K, Tomaru Y, Okamoto K
  • Journal Title: J Virol Volume: 94 Pages: in press
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• [Journal Article] Nullscript inhibits Cryptosporidium and Toxoplasma growth. (2020)
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  • Journal Title: Int J Parasitol Drugs Drug Resist Volume: 14 Pages: 159-166
  • DOI: 10.1016/j.ijpddr.2020.10.004
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• [Journal Article] Detection and Epidemiological Analysis of Symbiotic Viruses from Protozoa. (2020)
  • Author(s): Murakoshi F, Nakaya T, Kato K.
  • Journal Title: J Integrated Field Sci. Volume: 17 Pages: 15-17
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• [Journal Article] Ecological Structuring of Temperate Bacteriophages in the Inflammatory Bowel Disease-Affected Gut. (2020)
  • Author(s): Nishiyama H, Endo H, Blanc-Mathieu R, Ogata H
  • Journal Title: Microorganisms Volume: 8 Pages: 1663
  • DOI: 10.3390/microorganisms8111663
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Molecular bases for HOIPINs-mediated inhibitino of LUBAC and innate immune responses (2020)
  • Author(s): Oikawa D, Sato Y, Ohtake F, Komakura K, Hanada K, Sugawara K, Terawaki S, Mizukami T, Phuong HT, Iio K, Obika S, Fukushi M, Irie T, Tsuruta D, Shkamoto S, Tanaka K, Sarki Y, Fukai S, Tokunaga F
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• [Journal Article] Various miRNAs compensate the role of miR-122 on HCV replication. (2020)
  • Author(s): Ono C, Fukuhara T, Li S, Wang J, Sato A, Izumi T, Fauzyah Y, Yamamoto T, Morioka Y, Dokholyan NV, Standley DM, Matsuura Y.A3:J3
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• [Journal Article] An Optimized Metabarcoding Method for Mimiviridae. (2020)
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  • Journal Title: Microorganisms Volume: 8 Pages: 506
  • DOI: 10.3390/microorganisms8040506
  • Peer Reviewed / Open Access
• [Journal Article] Inherited chromosomally integrated HHV-6 possibly modulates human gene expression (2020)
  • Author(s): Ryuichi Kumata, Jumpei Ito, Kei Sato
  • Journal Title: Virus Genes Volume: 56 Pages: 386-389
  • DOI: 10.1007/s11262-020-01745-5
  • Peer Reviewed
• [Journal Article] A tissue level atlas of the healthy human virome (2020)
  • Author(s): Ryuichi Kumata, Jumpei Ito, Kenta Takahashi, Tadaki Suzuki, Kei Sato
  • Journal Title: BMC Biology Volume: 18 Pages: 55
  • DOI: 10.1186/s12915-020-00785-5
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• [Journal Article] Gargle lavage as a safe and sensitive alternative to swab samples to diagnose COVID-19: a case report in Japan. (2020)
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• [Journal Article] Molecular characterization of a novel polymycovirus from Penicillium janthinellum with a focus on its genome-associated PASrp. (2020)
  • Author(s): Sato, Y., Jamal, A., Kondo, H., and Suzuki, N.
  • Journal Title: Frontiers in Microbiology Volume: 11 Pages: 592789
  • DOI: 10.3389/fmicb.2020.592789
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• [Journal Article] Hadaka virus 1: A capsidless 11-segmented (+)RNA virus from a phytopathogenic fungus Fusarium oxysporum. (2020)
  • Author(s): Sato, Y., Shamsi, W., Jamal, A., Bhatti, M. F., Kondo, H., and Suzuki, N.
  • Journal Title: mBIo Volume: 11 Pages: e0045-20
  • DOI: 10.1128/mBio.00450-20
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Phocine distemper virus uses phocine and other animal SLAMs as a receptor but not human SLAM. (2020)
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  • Journal Title: Microbiol Immunol Volume: 64 Pages: 578-583
  • DOI: 10.1111/1348-0421.12788
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• [Journal Article] Measles Virus Hemagglutinin Protein Establishes a Specific Interaction With the Extreme N-Terminal Region of Human Signaling Lymphocytic Activation Molecule to Enhance Infection. (2020)
  • Author(s): Seki F, Yamamoto Y, Fukuhara H, Ohishi K, Maruyama T, Maenaka K, Tokiwa H, Takeda M
  • Journal Title: Front Microbiol Volume: 11 Pages: 1830
  • DOI: 10.3389/fmicb.2020.01830. eCollection 2020
  • Peer Reviewed / Open Access
• [Journal Article] Influenza A virus NS1 optimises virus infectivity by enhancing genome packaging in a dsRNA-binding dependent manner. (2020)
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  • Journal Title: Virol J Volume: 17 Pages: 107
  • DOI: 10.1186/s12985-020-01357-3.
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• [Journal Article] Development of a highly sensitive method for the detection of Cryptosporidium parvum virus type 1 (CSpV1). (2020)
  • Author(s): Shehata AA, Bando H, Fukuda Y, Kabir MHB, Murakoshi F, Itoh M, Fujikura A, Okawa H, Endo T, Goto A, Kachi M, Nakayama T, Kano Y, Oishi S, Otomaru K, Kazama K, Essa MI, Kato K
  • Journal Title: Jap J Vet Res Volume: 68 Pages: 159-170
  • DOI: 10.14943/jjvr.68.3.159
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] West Nile Virus in Farmed Crocodiles, Zambia, 2019 (2020)
  • Author(s): Simulundu E, Ndashe K, Chambaro HM, Squarre D, Reilly PM, Chitanga S, Changula K, Mukubesa AN, Ndebe J, Tembo J, Kapata N, Bates M, Sinkala Y, Hang’ombe BM, Nalubamba KS, Kajihara M, Sasaki M, Orba Y, Takada A, Sawa H.
  • Journal Title: Emerg Infect Dis Volume: 6(4) Pages: 811-814
  • DOI: 10.3201/eid2604.190954.
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Remarks] 新学術領域「ネオウイルス学」
  • URL: http://neo-virology.org/
• [Patent(Industrial Property Rights)] 動物試料からのウイルス検出方法 (2020)
  • Inventor(s): 福原崇介
  • Industrial Property Rights Holder: 福原崇介
  • Industrial Property Rights Type: 特許
  • Industrial Property Number: 特願2020-65903