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2012 Fiscal Year Final Research Report

Bio-π-space inphotoreceptive proteins:Spectroscopic investigationand creation of new functions

Planned Research

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Project AreaEmergence of highly elaborated pai-space and its function
Project/Area Number 20108014
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionNagoya Institute of Technology

Principal Investigator

KANDORI Hideki  名古屋工業大学, 工学研究科, 教授 (70202033)

Project Period (FY) 2008 – 2012
Keywordsπ空間 / 生体分子 / 発色団 / 赤外分光 / アミノ酸変異
Research Abstract

Highly elaboratedπ一space can be seen in biomolecules such as proteins, where specific chemical reactions occur in protein environment. In this study, we aimed at revealing the mechanism of such specific chemical reactions in photoreceptive roteins. By combining genetic engineering and various spectroscopic methods, we revealed the mechanism of color tuning and chemical reactions. Of particular notice is the structural study of primate color visual pigments, and the discovery ofthe positive correlation between hydrogen-bonding strength ofintemal water molecules and proton pump fUnction. We also attempted to create new fUnction in bio-π-space, and achieved a protein performing an inward proton tran sport.

  • Research Products

    (20 results)

All 2012 2011 2010 2009 2008 Other

All Journal Article (10 results) (of which Peer Reviewed: 10 results) Presentation (9 results) Remarks (1 results)

  • [Journal Article] Protein-bound water as the determinant of asymmetric functional conversion between light-driven proton and chloride pumps2012

    • Author(s)
      K.Muroda, K. Nakashima, M. Shibata, M Demura, H. Kandori
    • Journal Title

      Biochemistry

      Volume: 51 Pages: 4677-4684

    • Peer Reviewed
  • [Journal Article] Protein-bound water molecules in primate red- and green-sensitive visual pigments2012

    • Author(s)
      K. Katayama, Y. Furutani, H. Imai, H. Kandori
    • Journal Title

      Biochemistry

      Volume: 51 Pages: 1126-1133

    • Peer Reviewed
  • [Journal Article] Strong donation of the hydrogen bond of tyrosine during photoactivation of the BLUF domain2011

    • Author(s)
      T. Iwata, A. Watanabe, M. Iseki, M. Watanabe, H. Kandori
    • Journal Title

      J. Phys. Chem. Lett

      Volume: 2 Pages: 1015-1019

    • Peer Reviewed
  • [Journal Article] FTIR study of light-dependent activation and DNA repair processes of (6-4) photolyase2011

    • Author(s)
      Y. Zhang, T. Iwata, J. Yamamoto, K. Hitomi, S. Iwai, T. Todo, E. D. Getzoff, H. Kandori
    • Journal Title

      Biochemistry

      Volume: 50 Pages: 3591-3598

    • Peer Reviewed
  • [Journal Article] Protein fluctuations as the possible origin of the thermal activation of rod photoreceptors in the dark2010

    • Author(s)
      V. A. Lorenz-Fonfria, Y. Furutani. T. Ota, K. Ido, H. Kandori
    • Journal Title

      J. Am. Chem. Soc

      Volume: 132 Pages: 5693-5703

    • Peer Reviewed
  • [Journal Article] High-speed atomic force microscopy shows dynamic molecular processes in photoactivated bacteriorhodopsin2010

    • Author(s)
      M. Shibata, H. Yamashita, T. Uchihashi, H. Kandori, T. Ando
    • Journal Title

      Nature Nanotech

      Volume: 5 Pages: 208-212

    • Peer Reviewed
  • [Journal Article] An FTIR study of monkey greenand red-sensitive visual pigments2010

    • Author(s)
      K. Katayama, Y. Furutani, H. Imai, H. Kandori
    • Journal Title

      Angew. Chem. Int. Ed

      Volume: 49 Pages: 891-894

    • Peer Reviewed
  • [Journal Article] Engineering an inward proton transport from a bacterial sensor rhodopsin2009

    • Author(s)
      A. Kawanabe, Y. Furutani, K.-H. Jung, H. Kandori
    • Journal Title

      J. Am. Chem. Soc

      Volume: 131 Pages: 16439-16444

    • Peer Reviewed
  • [Journal Article] Spectroscopic and kinetic evidence on how bacteriorhodopsin accomplishes vectorial proton transport under functional conditions2009

    • Author(s)
      V. A. Lorenz-Fonfria, H. Kandori
    • Journal Title

      J. Am. Chem. Soc

      Volume: 131 Pages: 5891-5901

    • Peer Reviewed
  • [Journal Article] Color change of proteorhodopsin by a single amino acid replacement at a distant cytoplasmic loop2008

    • Author(s)
      M. Yoshitugu, M. Shibata, D. Ikeda, Y. Furutani, H. Kandori
    • Journal Title

      Angew. Chem. Int. Ed

      Volume: 47 Pages: 3923-3926

    • Peer Reviewed
  • [Presentation] New microbial rhodopsins from the ocean2012

    • Author(s)
      H. Kandori
    • Organizer
      15^<th> International Conference on Retinal Proteins
    • Place of Presentation
      Ascona, Switzerland (Invited)
    • Year and Date
      2012-10-03
  • [Presentation] Light-induced difference FTIR spectroscopy of photoreceptive proteins2012

    • Author(s)
      H. Kandori
    • Organizer
      244^<th> ACS National Meeting
    • Place of Presentation
      Philadelphia, USA (Invited)
    • Year and Date
      2012-08-22
  • [Presentation] Structure-function relationship in microbial rhodopsins2012

    • Author(s)
      H. Kandori
    • Organizer
      Symposium on Biophysics of Microbial Rhodopsins
    • Place of Presentation
      Shanghai, China (Invited)
    • Year and Date
      2012-05-18
  • [Presentation] Role of protein-bound water molecules in rhodopsins2011

    • Author(s)
      H. Kandori
    • Organizer
      15^<th> International Conference on Time-Resolved Vibrational Spectroscopy
    • Place of Presentation
      Ascona, Switzerland (Invited)
    • Year and Date
      2011-06-21
  • [Presentation] FTIR detection of protein-bound water molecules in membrane proteins2011

    • Author(s)
      H. Kandori
    • Organizer
      Symposium on "Biophysics on Functional Study of Proteins
    • Place of Presentation
      Berlin, Germany (Invited)
    • Year and Date
      2011-06-14
  • [Presentation] Mechanism of light-driven ion pumps2010

    • Author(s)
      H. Kandori
    • Organizer
      PACIFICHEM 2010
    • Place of Presentation
      Honolulu, USA (Invited)
    • Year and Date
      2010-12-20
  • [Presentation] FTIR study of rhodopsins2010

    • Author(s)
      H. Kandori
    • Organizer
      14^<th> International Conference on Retinal Proteins
    • Place of Presentation
      Santa Cruz, USA(Invited)
    • Year and Date
      2010-08-05
  • [Presentation] Structural changes accompanying retinal photoisomerization in rhodopsins2009

    • Author(s)
      H. Kandori
    • Organizer
      XXIV International Conference on Photochemistry
    • Place of Presentation
      Toledo, Spain (Invited)
    • Year and Date
      2009-07-21
  • [Presentation] FTIR study of rhodopsins in action2009

    • Author(s)
      H. Kandori
    • Organizer
      15^<th> International Congress on Photobiology
    • Place of Presentation
      Dusseldorf, Germany (Invited)
    • Year and Date
      2009-06-22
  • [Remarks]

    • URL

      http://www.ach.nitech.ac.jp/~physchem/kandori/index_j.html

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Published: 2014-08-29  

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