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1993 Fiscal Year Final Research Report Summary

Studies on in vitro translation system of mitochondria

Research Project

Project/Area Number 03044061
Research Category

Grant-in-Aid for international Scientific Research

Allocation TypeSingle-year Grants
SectionJoint Research
Research InstitutionUniversity of Tokyo

Principal Investigator

WATANABE Kimitsuna  University of Tokyo, Professor, 工学部, 教授 (00134502)

Co-Investigator(Kenkyū-buntansha) YOKOKAWA Takashi  Tokyo Institute of Technology, 生命理工学部, 助手 (90242304)
KAWAI Gota  University of Tokyo, 工学部, 助手 (70211860)
UEDA Takuya  University of Tokyo, 工学部, 助手 (80184927)
NISHIKAWA Kazuya  Tokyo Institute of Technology, 生命理工学部, 助教授 (60109262)
SPREMULLI Li  ノスカロライナ大学, 理学部, 教授
SPREMULLI Linda lucy  University of North Carolina
Project Period (FY) 1991 – 1993
KeywordsMitochondria / Ribosome / Translation factors / In vitro translationsystem / Poly(U)-dependentpoly(^<Phe>)synthesis / Formyltransferase / EF-Tu / IF-2
Research Abstract

The purpose of this project is to investigate the molecular mechanism of the animal mitochondrial (mt) translation system, especially, to elucidate the relationship between genetic code variations [UGA, termination to Trp codons ; AUA, Ile to Met codons ; AGA/AGG, Arg to Ser(invertebrates), Gly(Ascidian) and Termination codons(vertebrates)] found in animal mitochondria and tRNAs complementary to the varied codons, possessing unusual primary and tertiary structures [lack of D loop-T loop interaction ; lack of D arm or T arm]. By joining the knowledge and techniques of our group and Spremulli's group, this project was made possible. [1992] 1) A large-scale preparation of mt tRNAs was made possible by a hybridization method using DNA probes complementary to tRNA sequences. 2)It was elucidated that tRNA^<Ser> complementary to UCN codons possesses an unusual secondary structure. 3)Biologically active ribosomes, initiation factor (IF-2), elongation factors (EF-Tu, EF-G) and aminoacyl-tRNA sy … More nthetasaes were isolated and their properties investigated.
[1993] 1) The recognition sites of tRNA^<Ser> complementary to AGY codons by seryl-tRNA synthetase was investigated. It was elucidated that A44 in the T loop is the most important recognition site. 2) The poly(U)-dependent poly(Phe) synthesis system was constructed for bovine liver mitochondria and the exchangeability of its components with those of E.coli was investigated. 3) A novel modified nucleoside, 5-formylcytidine was found at the first anticodon of bovine mt tRNA^<Met>.4) The higher-order structure of mt tRNA^<Phe> was investigated by the sensitivity with RNase and chemical reagents.
[1994] 1) The poly(U)-dependent poly(Phe) synthesis was activated by addition of 1 mM spermine. 2) To verify that AUA is a Met codon, ribosomal binding and translation of Met-tRNA^<Met> in the presence of AUA-containing mRNA were attempted. 3) By obtaining fMet-tRNA^<Met> with the purified formyltransferase, it was elucidated that fMet-tRNA prefers IF-2 rather than EF-Tu and vice versa for Met-tRNA, indicating that the tRNA^<Met> is bifunctional by formylation of Met-tRNA. Less

  • Research Products

    (22 results)

All Other

All Publications (22 results)

  • [Publications] Kawori Wakita et al.: "Higher-order structure of bovine mitochondrial tRNA^<Phe> lacking the ‘conserved' GG and TΨCG sequences as inferred by enzymatic and chemical probing" Nucleic Acids Research. 22. 347-353 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shigeo Yoshinari et al.: "Existence of nuclear-encoded 5S-rRNA in bovine mitochondria" FEBS Letters. 338. 137-142 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yoh-ichi Watanabe et al.: "Tertiary structures of mitochondrial tRNAs having characteristic secondary structrues" Nucleic Acids Symposium Series. 29. 209-210 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shin-ichi Yokobori et al.: "Codons AGA and AGG are read glycine in ascidian mitochondria" Journal of Molecular Evolution. 36. 1-8 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yoshinori Kumazawa et al.: "Effect of the higher-order structure of tRNAs on the stability of hybrids with oligodeoxyribonucleotides:separation of tRNA by an efficient solution hybridization" Nucleic Acids Research. 20. 2223-2232 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Takuya Ueda et al.: "The T-loop region of animal mitochondrial tRNA^<Ser>(AGY) is a main recognition site for homologous seryl-tRNA synthetase" Nucleic Acids Research. 20. 2217-2222 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Syozo Osawa et al.: "Recent evidence for evolution of the genetic code" Microbiological reviews. 56. 229-264 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Takashi Yokogawa et al.: "A novel cloverleaf structure found in mammalian mitochondrial tRNA^<Ser> (UCN)" Nucleic Acids Research. 19. 6101-6105 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Takashi Yokogawa et al.: "Structure of mitochondrial tRNA" Nucleic Acids Symposium Series. 25. 175-176 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kiyohisa Mizumoto et al.: "Interactions of bovine mitochondrial phenylalanyl-tRNA with ribosomes and elongation factors from mitochondria and bacteria" Biochimica et Biophysica Acta. 1090. 167-172 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shuichi Asakawa et al.: "Strand-specific nucleotide composition bias in echinoderm and vertebrate mitochondrial genomes" Journal of Evolution. 32. 511-520 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kawori Wakita et al.: "Higher-order structure of bovine mitochondrial tRNA^<Phe> lacking the 'conserved' GG and T*CG sequences as inferred by enzymatic and chemical probing" Nucleic Acids Research. 22. 347-353 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shigeo Yoshinari et al.: "Existence of nuclear-encoded 5S-rRNA in bovine mitochondria" FEBS Letters. 338. 137-142 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yoh-ichi Watanabe et al.: "Tertiary structures of mitochondrial tRNAs having characteristic secondary structures" Nucleic Acids Symposium Series. 29. 209-210 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shin-ichi Yokobori et al.: "Codons AGA and AGG are read glycine in ascidian mitochondria" Journal of Molecular Evolution. 36. 1-8 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yoshinori Kumazawa et al.: "Effect of the higher-order structure of tRNAs on the stability of hybrids with oligodeoxyribonucleotides : separation of tRNA by an efficient solution hybridization" Nucleic Acids Research. 20. 2223-2232 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Takuya Ueda et al.: "The T-loop. region of animal mitochondrial tRNA^<Ser>(AGY) is a main recognition site for homologous seryl-tRNA synthetase" Nucleic Acids Research. 20. 2217-2222 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Syozo Osawa et al.: "Recent evidence for evolution of the genetic code" Microbiological reviews. 56. 229-264 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Takashi Yokogawa et al.: "A novel cloverleaf structure found in mammalian mitochondrial tRNA^<Ser> (UCN)" Nucleic Acids Research. 19. 6101-6105 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Takashi Yokogawa et al.: "Structure of mitochondrial tRNA" Nucleic Acids Symposium Series. 25. 175-176 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kiyohisa Mizumoto et al.: "Interactions of bovine mitochondrial phenylalanyl-tRNA with ribosomes and elongation factors from mitochondria and bacteria" Biochimica et Biophysica Acta. 1090. 167-172 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shuichi Asakawa et al.: "Strand-specific nucleotide composition bias in echinoderm and vertebrate mitochondrial genomes" Journal of Evolution. 32. 511-520 (1991)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 1995-02-07  

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