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1992 Fiscal Year Final Research Report Summary

APPLICATION OF GLUTATHIONE SYNTHETASE ON PEPTIDE SYNTHESIS

Research Project

Project/Area Number 03660138
Research Category

Grant-in-Aid for General Scientific Research (C)

Allocation TypeSingle-year Grants
Research Field 製造化学・食品
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

ODA Jun'ichi  INST. CHEM. RES., KYOTO UNIV., PROFESSOR, 化学研究所, 教授 (50027041)

Co-Investigator(Kenkyū-buntansha) TANAKA Takuji  INST. CHEM. RES., KYOTO UNIV., INSTRUCTOR, 化学研究所, 助手 (40227145)
KATO Hiroaki  INST. CHEM. RES., KYOTO UNIV., INSTRUCTOR, 化学研究所, 助手 (90204487)
Project Period (FY) 1991 – 1992
KeywordsGLUTATHIONE SYNTHETASE / PROTEIN ENGINEERING / PEPTIDE SYNTHESIS / SITE-DIRECTED MUTAGENESIS / SUBSTRATE RECOGNITION
Research Abstract

We have been studying the crystal structure of glutathione synthetase (GSHase) -substrates complex. These studies showed that the binding site of ATP is between two anti-parallel beta-sheets and that some residues interact with the bound ATP. However, the binding site of gamma-Glu- Cys is not clear because gamma-Glu-Cys gave poor electron density. We assumed some residues in the putative binding site of gamma-Glu-Cys and investigated their properties on the catalysis. Some mutant GSHases in which the residues around proposed binding site of gamma-Glu-Cys are replaced by site- directed mutagenesis are prepared and investigated in their properties. The analysis of the mutant GSHases shows that gamma-Glu-Cys was binding between Arg86 and Arg210 and that the thiol group of gamma-Glu-Cys was recognized by Thr288.
The binding site of ATP was confirmed by the technique of affinity labeling. The crystallography of the labeled GSHase showed that the binding site of the modifier (adenosine-5'-tetraphospho-5'-pyridoxal) is the same as that of ATP.
Crystallography of glutathione synthetase showed that a loop from Ile226 to Gly242 is above the binding sites and gave no electron density because of its flexibility. The position of the loop suggested that the loop have some roles on the catalysis. The analysis of the loop indicated that the loop moved over the active site to protect a labile intermediate from hydrolysis, controlled the recognition of glycine, and accelelared the catalysis by aligning the substrates in proper position.
These results suggest that the mutation of residues around the binding sites and of the loop give new enzymes which catalyze synthesis of a novel peptide.

  • Research Products

    (10 results)

All Other

All Publications (10 results)

  • [Publications] 日寺 隆雄: "Use of adenosine(5′)polyphospho(5′)pyridoxals to study the substrate-binding region of glutathione synthetase from Escherichia coli B" Biochemistry. 32. 1548-1554 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 山口 宏: "Three-dimensional structure of glutathione synthetase from Escherichia coli B at 2.0 A resolusion" Journal of Molecular Biology. (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 田中 琢治: "Mutational and proteolytic studies on a flexible loop in glutathione synthetase from Escherichia coli B:The loop and arginine-233 are critical for the catalytic reaction" Biochemistry. 31. 2259-2265 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 西岡 孝明: "Three-dimensional structure of ternary complex of glutathione synthetase from Escherichia coli B with ADP and glutathione" Photor Factory Activity Report. 10. (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 加藤 博章: "グルタチオン合成酵素の結晶構造に基づく活性中心構造の特徴と機能について" 生化学. 64. 181-186 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hibi, T.,: "Use of adenosine(5')polyphospho(5')pyridoxals to study the substrate-binding region of glutathione synthetase from Escherichia coli B" Biochemistry. 32. 1548-1554 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yamaguchi, H.: "Three-dimensional structure of glutathione synthetase from Escherichia coli B at 2.0 A^^゚ resolution" J. Mol. Biol.(1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Nishioka, T.: "Three-dimensional structure of ternary complex of glutathione synthetase from Escherichia coli B with ADP and glutathione" Photon Factory Activity Report. (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tanaka, T.: "Mutational and proteolytic studies on a flexible loop in glutathione synthetase from Escherichia coli B: The loop and arginine-233 are critical for the catalytic reaction" Biochemistry. 31. 2259-2265 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kato, H.,: "Structural analysis of function and feature of the active site in glutathione synthetase" Seikagaku (in Japanese). 64. 181-186 (1992)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 1994-03-24  

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