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1997 Fiscal Year Final Research Report Summary

Basic Studies on the Catalytic Reaction Mechanism of Enzymeby Organic Chemical Approaches

Research Project

Project/Area Number 08456060
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Bioproduction chemistry/Bioorganic chemistry
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

ODA Jun'ichi  Kyoto University, Inst.Chem.Res., Professor, 化学研究所, 教授 (50027041)

Co-Investigator(Kenkyū-buntansha) KATO Hiroaki  Kyoto University, Inst.Chem.Res., Instructor, 化学研究所, 助手 (90204487)
HIRATAKE Jun  Kyoto University, Inst.Chem.Res., Associate Professor, 化学研究所, 助教授 (80199075)
Project Period (FY) 1996 – 1997
Keywordsorganic syntesis / protein engineering / enzymatic reaction meehanism / Xray crystallography / transition-state analogue / glutathione / stereospecificity / molecular recognition
Research Abstract

In this study, we have investigated enzymatic reaction mechanism of ATP and NADPH dependent enzymes by X-ray crystallography, site-directed mutagenesis, and synthetic organie chemistry. We subjected three CN-bond ligases having different substrate specificity ; glutathione synthetase, gamma-glutamylcysteine synthetase, and asparagine synthetase. We also subjected two tropinone reductases with differnt stereospecificity ; tropinone reductase I and II.Each of these reductases only produce tropine or PSI-tropine that are diastereomeric with each other.
The following results were archived.
1.We succeed to crystallize gamma-glutamylcysteine synthetase by alteration of its surface cysteine residues into serine residues. We also synthesized its transition state analogue inhibitors. Kinetic analysis using the inhibitiors suggested some structural motives of the active site architecture of this enzme.
2.We crystallized two tropinone reductases and solved their three-dimensional structures by multiple isomorphous replacement methods independently. The results implicated the structural basis for their stereospecific reaction.
3.We determine theimportant active site residues of asparagine synthetase by site-directed mutageneses of those residues that proposec from crystal structure analysis. We also succeed to synthesize its transition-state analogue inhibitor and the crystal structure analysis of the enzyme complexed with the inhibitor is in progress.

  • Research Products

    (10 results)

All Other

All Publications (10 results)

  • [Publications] 平竹 潤: "Amino phosphinic and Amino boronic Acid As a Key Element of Transition-STate Analogue Inhibitor of Enzymes" Biosci.Biotech.Biochem.61(2). 211-218 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 加藤 博章: "動的光散乱法を用いたタンパク質の結晶化の支援法" 日本結晶学会誌. 39(4). 315-319 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 中津 亨: "Crystal Structure of Asparagine Synthetase reveals a close Evolutionary Relationship to Class II Aminoacyl-tRNA Synthetase" Nature Struct.Boil.5(1). 15-19 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Keiji Nakajima: "Crystal Structures of Two Tropinone Reductases : Different Reaction Stereospecificities in the same protein fold" Proc.Natl.Acad.Soc.USA. (in press).

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Atsuko Yamashita: "Crystallization and Preliminary X-ray Study of Tropinone Reductase II" Acta Crystallogr.D. (in press).

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Jun Hiratake: "Amino phosphinic and Amino boronic Acid As a Key Element of Transition-STate Analogue Inhibitor of Enzymes" Biosci.Biotech.Biochem.61(2). 211-218 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hiroaki Kato: "Supporting Strategies of Protein Crystallization by Dynamic Light Scattering" Nippon Keshou Gakukaishi. 39(4). 315-319 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Toru Nakatsu: "Crystal Structure of Asparagine Synthetase reveals a close Evolutionary Relationship to Class II Aminoacyl-tRNA Synthetase" Nature Struct.Biol.5(1). 15-19 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Keiji Nakajima: "Crystal Structures of Two Tropinone Reductases : Different Reaction Stereospecificities in the same protein fold" Proc.Natl.Acad.Soc.USA. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Atsuko Yamashita: "Crystallization and Preliminary X-ray Study of Tropinone Reductase II." Acta Crystallogr.D. (in press).

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 1999-03-16  

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