1999 Fiscal Year Final Research Report Summary
Chromosome painting and synteny analysis in cereals by multicolor FISH using bacterial artificial chromosomes
| Project/Area Number |
09490024
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| Research Category |
Grant-in-Aid for Scientific Research (B)
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| Allocation Type | Single-year Grants |
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| Section | 一般 |
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| Research Field |
広領域
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| Research Institution | Osaka Kyoiku University |
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Principal Investigator |
MUKAI Yasuhiko OSAKA KYOIKU UNIVERSITY,FACULTY OF EDUCATION,PROFESSOR, 教育学部, 教授 (30110795)
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| Project Period (FY) |
1997 – 1999
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| Keywords | cereal / Aegilops squarrosa / bacterial artificial chromosome / multicolor FISH / chromosome painting / synteny analysis / centromere / DNA fiber FISH |
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| Research Abstract |
1.Chromosome painting was carried out on chromosomes of cereals using the probes in which rice or Aegilops squarrosa bacterial artificial chromosome(BAC) clones were pooled for each chromosome group. We succeeded in developing a probe labeling-detection system which discriminate each probe with different color by combining three fluorochromes. The seven pooled probe sets were visualized simultaneously in a single FISH experiment. Using this technique, genome donor species to polyploid species were identified in useful plants such as, finger millet, peanut and coffee.
2.We have selected 500 clones (including agronomically important genes) from an Ae squarrosa BAC library and applied multicolor FISH to mitotic metaphase chromosomes of Ae. squarrosa and common wheat. Most genes were mapped on the distal ends of chromosomes. The synteny analysis was conducted by comparing the order of FISH signals. Synteny of some genes was conserved beyond plant family.
3.We have achieved the direct visualization of gene organization on extended nuclear DNA fibers using FISH in agronomically important genes of cereals. We demonstrated the repetitive nature of the secalin-1 gene cluster of rye, which consists of up to 15 genes arranged in tandem repeats. We also developed high-resolution FISH on BAC DNAs by molecular combing. The fiber FISH technique contributes to construction of BAC contig.
4.We have isolated 20 clones containing centromeric repeated sequences from a BAC library of Ae. squarrosa and characterized these clones. We found that several kinds of sequences have high homology to the sequences reported previously in rice, sorghum, barley and corn. FISH analysis has revealed that these sequences are mostly conserved in the centromeric regions of cereals. Fine structure of centromeres was visualized by fiber FISH.
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[Publications] Rahman,S., Abrahams,S., Abbott,D., Mukai,Y., Samuel,M., Morell,M. and Appels,R.: "A complex arrangement of genes at a starch branching enzyme I locus in the D genome donor of wheat"Genome. 40. 465-474 (1997)
Description
「研究成果報告書概要(欧文)」より
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[Publications] Tsujimoto,H., Mukai,Y., Akagawa,K., Nagaki,K., Fujigaki,J., Yamamoto,M. and Sasakuma,T.: "Identification of barley chromosomes by repetitive sequences : Conservative distribution of Afa-family repetitive sequences on the chromosomes of barley and wheat"Genes and Genetic Systems. 72. 303-309 (1997)
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「研究成果報告書概要(欧文)」より
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[Publications] Mukai,Y., Rahman,S., Yamamoto,M., Okamoto,M., Turner,M., Li,Z., Mukai,Y., Abbott,D., Abrahams,S., Kossar-Hashemi,B., Samuels,M., Appels,R. and Morell,M.K.: "Physical mapping of genes controlling wheat grain quality by fluorescence in situ hybridization"Proc. 9th Int. Wheat Genet. Symp., Saskatoon. 218-221 (1998)
Description
「研究成果報告書概要(欧文)」より
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[Publications] Rahman,S., Li,Z., Mukai,Y., Abbott,D., Abrahams,S., Kossar-Hashemi,B., Samuels,M., Appels,R. and Morell,M.K.: "Structure of branching enzyme genes in wheat"Proc. the 4th Asia-Pacific Conference on Agricultural Biotechnology, Darwin. 388-390 (1998)
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「研究成果報告書概要(欧文)」より
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[Publications] Turner,M, Mukai,Y., Leroy,P., Charef,B., Appels,R. and Rahman,S.: "The Ha locus of wheat : Identification of a polymorphic region for tracing grain hardness in crosses"Genome. 42. 1242-1250 (1999)
Description
「研究成果報告書概要(欧文)」より
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