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2001 Fiscal Year Final Research Report Summary

Vesicle formation and recycling in the secretory pathway - from yeast to higher plants

Research Project

Project/Area Number 10215210
Research Category

Grant-in-Aid for Scientific Research on Priority Areas (B)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionRIKEN

Principal Investigator

NAKANO Akihiko  RIKEN, Molecular Membrane Biology Lab.,Chief Scientist, 生体膜研究室, 主任研究員 (90142140)

Project Period (FY) 1998 – 2001
Keywordsprotein secretion / membrane traffic / ARF1 / RER1 / SEC12 / Ara6 / bulb / gravitropism
Research Abstract

Studies on yeast :
1) We analyzed ts alleles of Arf1 GTPase and isolated multicopy suppressors. We suggested that different GEFs and GAPs are involved in an allele-specific manner. 2) We demonstrated that Rer1p is a sorting receptor in the Golgi that retrieves a subset of ER membrane proteins. We also identified the Golgi-localization signals of Rer1p and showed that they interact with COPI components. 3) We identified ER-localization signals of Sec12p and Sec71p. We also crystalized Sec12p and analyzed its 3-D structure. 4) We showed that ergosterol is essential for targeting of the tryptophan permease Tat2p to the plasma membrane. 5) We demonstrated that both Rer2p and its homologue Srt1p have the cis-prenyltransferase activity but show different characteristics.
Studies on plants :
1) We introduced dominant negative mutants of AtARF1 into plant cells and showed that its expression inhibits ER-Golgi traffic. 2) We identified Ara6 and Ara7 as new members of the Rab GTPase family and showed that they function in endosomes. We showed that Ara6 has uniques features distinct from other conventional Rab GTPases. 3) We showed that Arabidopsis RMA1, originally isolated as a suppressor of the yeast sec15 mutant, encodes a novel membrane-bound ubiquitin ligase. 4) We showed that vacuole membranes of Arabidopsis plants as visualized by γTIP-GFP display very dynamic and complex structures. 5) We demonstrated from the analysis of Arabidopsis shoot gravitropism mutants that vacuole biogenesis plays very important roles in the sensing of the gravity.

  • Research Products

    (28 results)

All Other

All Publications (28 results)

  • [Publications] Sato, K.: "Rer1p, a retrieval receptor for ER membrane proteins, is dynamically localized to Golgi by coatomer"J. Cell Biol.. 152. 935-944 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Matsuda, N.: "Rma1, a novel type of RING-finger protein conserved from Arabidopsis to human, is a membrane-bound ubiquitin ligase"J. Cell Sci.. 114. 1949-1957 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Dumon-Seignovert, L.: "Purification, crystallization and preliminary X-ray diffraction analysis of the yeast Sec12D protein, a guanine nucleotide exchange factor involved in vesicle transport"Acta Cryst. D.. 57. 893-895 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Sato, M.: "Yeast Saccharomyces cerevisiae has two cis-prenyltransferases with different properties and localizations. Implication for their distinct physiological roles in dolichol synthesis"Genes to Cells. 6. 495-506 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Umebayashi, K.: "Activation of the Ras-cAMP signal transduction pathway inhibits the proteasome-independent degradation of misfolded protein aggregates in the ER lumen"J. Biol. Chem.. 276. 41444-41454 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ueda, T.: "Ara6, a plant-unique novel-type Rab GTPase, functions in the endocytic pathway of Arabidopsis thaliana"EMBO J.. 20. 4730-4741 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Morita, M.T.: "Involvement of the vacuoles of the endodermis in the early process of shoot gravitropism in Arabidopsis"Plant Cell. 14. 47-56 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Saito, C.: "A complex and mobile structure forms a distinct subregion within the continuous vacuolar membrane in young cotyledons of Arabidopsis"Plant J.. 29. 245-255 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Sato, K.: "Emp47p and its close homologue Emp46p have a tyrosine-containing ER exit signal and function in glycoprotein secretion in Saccharomyces cerevisiae"Mol. Biol. Cell. 13. 2518-2532 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Takeuchi, M.: "Arf1 GTPase plays roles in the protein traffic between the endoplasmic reticulum and the Golgi apparatus in tobacco and Arabidopsis cultured cells"Plant J.. 31. 499-515 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Geldner, N.: "The Arabidopis ARF-GEF GNOM recycles PIN1 through endosomes and mediates auxin transport and auxin-dependent plant growth"Cell. 112. 219-230 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Sato, K.: "Oligomerization of a cargo transport receptor directs protein sorting into COPII-coated transport vesicles"Mol. Biol. Cell. (印刷中). (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Sato, K.: "Distinct transmembrane determinants for Rer1p-dependent ER localization and multivesicular body sorting"Mol. Biol. Cell. (印刷中). (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Umebayashi, K.: "Ergosterol synthesis is required for targeting of tryptophan permease to the yeast cell surface"J. Cell Biol.. (印刷中). (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Sato, K. et al.: "Rer1p, a retrieval receptor for ER membrane proteins, is dynamically localized to Golgi by coatomer"J. Cell Biol.. 152. 935-944 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Matsuda, N. et al.: "Rma1, a novel type of RING-finger protein conserved from Arabidopsis to human, is a membrane-bound ubiquitin ligase"J. Cell Sci.. 114. 1949-1957 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Dumon-Seignovert, L. et al.: "Purification, crystallization and preliminary X-ray diffraction analysis of the yeast Secl2D protein, a guanine nucleotide exchange factor involved in vesicle transport"Acta Cryst. D.. 57. 893-895 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Sato, M. et al.: "Yeast Saccharomyces cerevisiae has two cis-prenyltransferases with different properties and localizations. Implication for their distinct physiological roles in dolichol synthesis"Geme to Cells. 6. 495-506 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Umebayashi, K. et al.: "Activation of the Ras-cAMP signal transduction pathway inhibits the proteasome-independent degradation of misfolded protein aggregates in the ER lumen"J Biol. Chem.. 276. 41444-41454 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ueda, T. et al.: "Ara6, a plant-unique novel-type Rab GTPase, functions in the endocytic pathway of Arabidopsis thaliana"EMBL J.. 20. 4730-4741 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Morita, M.T. et al.: "Involvement of the vacuoles of the endodermis in the early process of shoot gravitropism in Arabidopsis"Plant Cell. 14. 47-56 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Saito, C. et al.: "A complex and mobile structure forms a distinct subregion within the continuous vacuolar membrane in young cotyledons of Arabidopsis"Plant J.. 29. 245-255 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Sato, K., and Nakano, A.: "Emp47p and its close homologue Emp46p have a tyrosine-containing ER exit signal and function in glycoprotein secretion in Saccharomyces cerevisiae"Mol. Biol. Cell. 13. 2518-2532 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Takeuchi, M. et al.: "Arf1 GTPase plays roles in the protein traffic between the endoplasmic reticulum and the Golgi apparatus in tobacco and Arabidopsis cultured cells"Plant J.. 31. 499-515 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Geldner, N. et al.: "The Arabidopis ARF-GEF GNOM recycles PIN1 through endosomes and mediates auxin transport and auxin-dependent plant growth"Cell. 112. 219-230 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Sato, K., and Nakano, A.: "Oligomerization of a cargo transport receptor directs protein sorting into COPII-coated transport vesicles"Mol Biol. Cell. in press.

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Sato, K. et al.: "Distinct transmembrane determinants for Rer1p-dependent ER localization and multivesicular body sorting"Mol Biol. Cell. in press.

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Umebayashi, K., and Nakano, A.: "Ergosterol synthesis is required for targeting of tryptophan permease to the yeast cell surface"J. Cell Biol.. in press.

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2004-04-14  

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