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2001 Fiscal Year Final Research Report Summary

Development of antibiotics by monitoring the inhibition of the ATP-binding to DnaA, the initiator protein of chromosomal DNA replication in bacteria

Research Project

Project/Area Number 12557210
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section展開研究
Research Field Biological pharmacy
Research InstitutionThe University of Tokyo

Principal Investigator

SEKIMIZU Kazuhisa  The University of Tokyo, Graduate School of Pharmaceutical Sciences, Developmental Biochemistry, Professor, 大学院・薬学系研究科, 教授 (90126095)

Project Period (FY) 2000 – 2001
KeywordsDnaA protein / Staphylococcus aureus / ATP-binding / basic phospholipid / acidic phospholipid / DNA replication / DNA polymerase III / silkworm
Research Abstract

Staphylococcus aureus causes opportunistic diseases for humans. In this study, we examined biochemical nature of Staphylococcus aureus DnaA protein, the replication initiator. Previous studies with Escherichia coli DnaA protein demonstrated that the ATP-binding form of DnaA protein is active, whereas the ADP-binding form is inactive. Purified Staphylococcus aureus DnaA proteins also showed high affinity for ATP and ADP. We showed that phosphatidylglycerol, an acidic phospholipids, stimulated the release of ADP from the ADP-DnaA complex, resulting in the activation of DnaA protein. Lysylphosphatidylglycerol, a basic phospholipid, was shown to inhibit the action of phosphatidylglycerol. Thus, phosphatidylglycerol may negatively regulate re-activation of DnaA protein. We propose here a new model of the regulation of initiation of DNA replication by increase in the content of basic phospholipids in cytoplasmic membranes.
We isolated mutants of Staphylococcus aureus whose DNA replication were temperature-sensitive. By complementation analysis, we identified polC, dnaE, and dnaC genes which are essential for DNA replication in the bacteria. We also established an animal model of infectious diseases by using silkworms. The system will provide a useful screening system for medicines against infectious diseases.

  • Research Products

    (14 results)

All Other

All Publications (14 results)

  • [Publications] Nishida S. et al.: "A nucleotide switch in the E. coil DnaA protein initiates chromosomal replication : Evidence from a mutant DnaA protein defective in regulatory ATP hydrolysis in vitro and in vivo"J Biol Chem. (in press). (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kaito C. et al.: "Silkworm larvae as an animal model of bacterial infection pathogenic to humans"Microbial Pathogenesis. (in press). (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kuroda M. et al.: "Whole genome sequencing of meticillin-resistant Staphylococcus aureus"Lancet. 357・9264. 1225-1240 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Inoue R. et al.: "Genetic identification of two distinct DNA polymerases, DnaE and PolC, that are essential for chromosomal DNA replication in Staphylococcus aureus"Mol Genet Genomics. 266・4. 564-571 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kubota T. et al.: "DnaA protein Lys-415 is close to the ATP-binding site : ATP-pvridoxal affinity labeling"Biochem Biophys Res Commun. 288・5. 1141-1148 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kawakami H. et al.: "Arrest of cell division and nucleoid partition by genetic alterations in the sliding clamp of the replicase and in DnaA"Mol Genet Genomics. 266・2. 167-179 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kondo T. et al.: "Suppression of temperature-sensitivity of a dnaA46 mutant by excessive DNA supercoiling"Biochem J.. 348・2. 375-379 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Nishida S. et al.: "A nucleotide switch in the E. coli DnaA protein initiates chromosomal replication : Evidence from a mutant DnaA protein defective in regulatory ATP hydrolysis in vitro and in vivo"J Biol Chem. (in press). (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kaito C. et al.: "Silkworm larvae as an animal model of bacterial infection pathogenic to humans"Microbial Pathogenesis. (in press). (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kuroda M. et al.: "Whole genome sequencing of meticillin-resistant Staphylococcus aureus"Lancet. 357. 1225-1240 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Inoue R. et al.: "Genetic identification of two distinct DNA polymerases, DnaE and PolC, that are essential for chromosomal DNA replication in Staphylococcus aureus"Mol Genet Genomics. 266. 564-571 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kubota T. et al.: "DnaA protein Lys-415 is close to the ATP-binding site : ATP-pyridoxal affinity labeling"Biochem Biophys Res Commun. 288. 1141-1148 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kawakami H. et al.: "Arrest of cell division and nucleoid partition by genetic alterations in the sliding clamp of the replicase and in DnaA"Mol Genet Genomics. 266. 167-179 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kondo T. et al.: "Suppression of temperature-sensitivity of a dnaA46 mutant by excessive DNA supercoiling"Biochem J.. 348. 375-379 (2000)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2003-09-17  

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