2005 Fiscal Year Final Research Report Summary
Dynamics of signal transduction in the system of organogenesis and regeneration
Project/Area Number |
13044003
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Research Category |
Grant-in-Aid for Scientific Research on Priority Areas
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Allocation Type | Single-year Grants |
Review Section |
Biological Sciences
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Research Institution | National Institute for Basic Biology (2004-2005) Okazaki National Research Institutes (2001-2003) |
Principal Investigator |
UENO Naoto National Institute for Basic Biology, Laboratory of Morphogenesis, Professor, 形態形成研究部門, 教授 (40221105)
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Co-Investigator(Kenkyū-buntansha) |
TAIRA Masanori University of Tokyo, Department of Biological Science, Associate Professor, 大学院理学研究科, 助教授 (60150083)
NISHIDA Hiroki Osaka University, Department of Biology, Professor, 大学院理学研究科, 教授 (60192689)
KOBAYASHI Satoru National Institutes of Natural Sciences (Okazaki Research Facilities), Okazaki Institute for Integrative Bioscience, Professor, 岡崎統合バイオサイエンスセンター, 教授 (90225508)
TASHIRO Kousuke Kyushu University, Faculty of Agriculture, Associate Professor, 大学院生物資源環境科学研究科, 助教授 (00192170)
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Project Period (FY) |
2001 – 2005
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Keywords | early development / embryonic induction / cell-to-cell interation / microarray / Xenopus laevis / Drosophila / germ cell / cell migration |
Research Abstract |
We performed a series of investigations involving systematic and comprehensive studies using model animals, to establish a platform for clarifying the machinery that controls early development consisting of complex cell-to- cell interactions "Early developmental systems" which we call and the relationship among their molecular components. We also carried out functional analyses of components (genes and proteins) identified by the analyses to ask their in vivo role in early embryogenesis. By the coordination of Naoto Ueno, Masanori Taira, and Kosuke Tashiro for using Xenopus laevis as a model system, construction of cDNA libraries, determination of nucleotide sequence of the cDNAs, fabrication of high-density microarray, comprehensive analyses of gene expression by the microarray during early development, spatial and temporal gene expression analysis, and construction of databases containing those information were achieved. Particularly, Ueno and Tashiro optimized the combined methodology of the high-density microarray and overexpression of polypeptide growth factors in embryos. Through the analyses which we established, Ueno and Taira focused on the regulation of gastrulation and head development, respectively, and investigate the function of the identified several genes essential for those developmental events. Satoru Kobayashi established a method of labeling germ cells specifically by expressing GFP under the regulation of a germ cell-specific promoter and germ cells were selected by cell- sorting. The microarray analysis of germ cell specific genes identified a number of genes implicated in germ cell differentiation, maintenance, and migration. It is noteworthy that a large group of genes that are predicted to be involved in one particular function was identified. Taken together these achievements prove that systematic and comprehensive analyses of genes are very effective to clarify the molecular network of early developmental processes.
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Research Products
(82 results)
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[Journal Article] Integrinalpha5-dependent fibronectin accumulation for maintenance of somite boundaries in zebrafish embryos.2005
Author(s)
Koshida, S., Kishimoto, Y., Ustumi, H., Shimizu, T., Furutani-Seiki, M., Kondoh, H., Takada, S.
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Journal Title
Dev.Cell 8
Pages: 587-598
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Drosophila caspase transduces Shaggy/GSK-3b kinase activity in neural precuorsor development.2005
Author(s)
Kanuka, H., Kuranaga, E., Takemoto, K., Hiratou, T., Okano, H., Miura, M.
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Journal Title
EMBO J. 24
Pages: 3793-3806
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Integrinalpha5-dependent fibronectin accumulation for maintenance of somite boundaries in zebrafish embryos.2005
Author(s)
Koshida, S., Kishimoto, Y., Ustumi, H., Shimizu, T., Furutani-Seiki, M., Kondoh, H., *Takada, S.
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Journal Title
Dev. Cell 8
Pages: 587-598
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Drosophila caspase transduces Shaggy/GSK-3b kinase activity in neural precuorsor development.2005
Author(s)
Kanuka, H., Kuranaga, E., Takemoto, K., Hiratou, T., Okano, H., *Miura, M.
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Journal Title
EMBO J. 24
Pages: 3793-3806
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Screening of FGF target genes in Xenopus by microarray : temporal dissection of the signalling pathway using a chemical inhibitor.2004
Author(s)
Chung, H.A., Hyodo-Miura, J., Kitayama, A., Terasaka, C., Nagamune, T., Ueno, N.
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Journal Title
Genes Cells 9
Pages: 749-761
Description
「研究成果報告書概要(和文)」より
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[Journal Article] A transposon-mediated gene trap approach identifies developmentally regulated genes in zebrafish.2004
Author(s)
Kawakami, K., Takeda, H., Kawakami, N., Kobayashi, M., Matsuda, N., Mishina, M.
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Journal Title
Developmental Cell 7
Pages: 133-144
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Nodal antagonists regulate formation of the anteroposterior axis of the mouse embryo.2004
Author(s)
Yamamoto, M., Saijoh, Y., Perea-Gomez, A., Shawlot, W., Behringer RR., Ang SL., Hamada, H., Meno, C.
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Journal Title
Nature 428
Pages: 387-392
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Screening of FGF target genes in Xenopus by microarray : temporal dissection of the signalling pathway using a chemical inhibitor.2004
Author(s)
Chung, H.A., Hyodo-Miura, J., Kitayama, A., Terasaka, C., Nagamune, T., *Ueno, N.
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Journal Title
Genes Cells 9
Pages: 749-761
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Nodal antagonists regulate formation of the anteroposterior axis of the mouse embryo.2004
Author(s)
Yamamoto, M., Saijoh, Y., Perea-Gomez, A., Shawlot, W., Behringer RR., Ang SL., *Hamada, H., Meno, C.
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Journal Title
Nature 428
Pages: 387-392
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Zic2 patterns binocular vision by specifying the uncrossed retinal projection.2003
Author(s)
Herrera, E., Brown L., Aruga, J., Rachel, R.A., Dolen, G., Mikoshiba, K., Brown, S., Mason, C.A.
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Journal Title
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Interplay between the tumor suppressor p53 and TGF-b signaling shapes embryonic body axes in Xenopus.2003
Author(s)
Takebayashi-Suzuki, K., Funami, J., Tokumori, D., Saito, A., Watabe, T., Miyazono, K., Kanda, A., Suzuki, A.
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Journal Title
Development 130
Pages: 3929-3939
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Nodal signaling induces the midline barrier by activating Nodal expression in the lateral plate.2003
Author(s)
Yamamoto, M., Mine, N., Mochida, K., Sakai, Y., Saijoh, Y., Meno, C., Hamada, H.
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Journal Title
Development 130
Pages: 1795-1804
Description
「研究成果報告書概要(和文)」より
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[Journal Article] The homeoprotin Nanog is required for maintenance of pluriopotency in mouse epiblast and ES cells.2003
Author(s)
Mitsui, K., Tokuzawa, Y., Itoh, H., Segawa, K., Murakami, M., Takahashi, K., Murayama, M., Maeda, M., Yamanaka, S.
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Journal Title
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Maternal macho-1 is an intrinsic factor that maker cell response to the same FGF signal differ between mesenchyme and notochord induction in ascidian embryos.2003
Author(s)
Kobayashi, K., Sawada, K., Yamamoto, H., Wada, S., Saiga, H., Nishida H.
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Journal Title
Science 130
Pages: 5179-5190
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Conserved role of nanos proteins in germ cell development.2003
Author(s)
Tsuda, M., Sasaoka, Y., Kiso, M., Abe, K., Haraguchi, S., Kobayashi, S., Saga, Y.
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Journal Title
Science 301
Pages: 1239-1241
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Bayesian network and nonparametric heteroscedastic regeression for nonlinear modeling of genetic network.2003
Author(s)
Imoto, S., Kim, S., Goto, T., Aburatani, S., Tashiro, K., Kuhara, S., Miyano, S.
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Journal Title
J.Bioinformatics&Computational Bio. 1
Pages: 231-252
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Zic2 patterns binocular vision by specifying the uncrossed retinal projection.2003
Author(s)
Herrera, E., Brown L., Aruga, J., Rachel, R.A., Dolen, G., Mikoshiba, K., Brown, S., *Mason, C.A.
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Journal Title
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Nodal signaling induces the midline barrier by activating Nodal expression in the lateral plate.2003
Author(s)
Yamamoto, M., Mine, N., Mochida, K., Sakai, Y., Saijoh, Y., Meno, C., *Hamada, H.
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Journal Title
Development 130
Pages: 1795-1804
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] The homeoprotin Nanog is required for maintenance of pluriopotency in mouse epiblast and ES cells.2003
Author(s)
Mitsui, K., Tokuzawa, Y., Itoh, H., Segawa, K., Murakami, M., Takahashi, K., Murayama, M., Maeda, M., *Yamanaka, S.
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Journal Title
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Maternal macho-1 is an intrinsic factor that makes cell response to the same FGF signal differ between mesenchyme and notochord induction in ascidian embryos.2003
Author(s)
Kobayashi, K., Sawada, K., Yamamoto, H., Wada, S., Saiga, H., *Nishida H
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Journal Title
Development 130
Pages: 5179-5190
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Conserved role of nanos proteins in germ cell development.2003
Author(s)
Tsuda, M., Sasaoka, Y., Kiso, M., Abe, K., Haraguchi, S., Kobayashi, S., *Saga, Y.
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Journal Title
Science 301
Pages: 1239-1241
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Bayesian network and nonparametric heteroscedastic regeression for nonlinear modeling of genetic network.2003
Author(s)
Imoto, S., Kim, S., Goto, T.Aburatani, S., Tashiro, K., Kuhara, S., Miyano, S.
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Journal Title
J.Bioinformatics&Computational Bio. 1
Pages: 231-252
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Low density detergent-insoluble membrane of Xenopus eggs : Subcellular microdomain for tyrosine kinase signaling in fertilization.2002
Author(s)
Sato, K., Iwasaki, T., Ogawa, K., Konishi, M., Tokmakov, A.A., Fukami, Y.
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Journal Title
Development 129
Pages: 885-896
Description
「研究成果報告書概要(和文)」より
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[Journal Article] A C.elegans TGF-b, DBL-1, controls the exoression of LON-1 that regulates polyploidization and body length.2002
Author(s)
Morita, K., Flemming, A., Sugihara, Y., Mochii, M., Suzuki, Y., Yoshida, S., Wood, B., Kohara, Y., Leroi, A.M., UenoN.
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Journal Title
EMBO J. 21
Pages: 1063-1073
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Ski is involved in transcriptional regulation by the repressor and full-length forms of Gli3.2002
Author(s)
Dai, P., Shinagawa, T., Nomura, T., Harada, J., Kaul, S.C., Wadhwa, R.Akimaru, H., Sasaki, H., Colmenaes, C., Ishii, S.
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Journal Title
Description
「研究成果報告書概要(和文)」より
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[Journal Article] A. Nuclear localization of Duplin, a beta-catenin-binding protein, is essential for its inhibitory activity on the Wnt signaling pathway.2002
Author(s)
Kobayashi, M., Kishida, S., Fukui, A., Michiue, T., Miyamoto, Y., Okamoto, T., Yoneda, Y., Asashima, M., Kikuchi
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Journal Title
J.Biol.Chem. 277
Pages: 5816-5822
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Differentiation of embryonic stem cells is induced by GATA factors.2002
Author(s)
Fujikura, F., Yamamoto, e., Yonemura, S., Hosoda, K., Masui, S., Nakao, K., Miyazaki, J.-I., Niwa, H.
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Journal Title
Genes Dev. 16
Pages: 784-789
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Oscillatory expression of the bHLH factor Hesl regulated by a negative feedback loop2002
Author(s)
Hirata, H., Yoshiura, S., Ohtsuka, T., Bessho, Y., Harada, T., Yoshikawa, K., Kageyama, R.
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Journal Title
Science 298
Pages: 840-843
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Reaper-mediated inhibition of DIAP1-induced Drosophila TRAF1 degradation leads to JNK activation.2002
Author(s)
Kuranaga, E., Kanuka, H., Igaki, T., Sawamoto, K., Ichijo, H., Okano, H., Miura, M.
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Journal Title
Nature Cell Biol. 4
Pages: 705-710
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Casein kinase I phosphorylates the Armadillo protein and induces its degradation in Drosophila.2002
Author(s)
Yanagawa, S., Matsuda, Y., Lee, JS., Matsubayashi, H., Sese, S., Kadowaki, T., Ishimoto, A.
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Journal Title
EMBO J. 21
Pages: 1733-1742
Description
「研究成果報告書概要(和文)」より
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[Journal Article] elegans TGF- b, DBL-1, controls the expression of LON-1 that regulates polyploidization and body length.2002
Author(s)
Morita, K., Flemming, A., Sugihara, Y., Mochii, M., Suzuki, Y.Yoshida, S., Wood, B., Kohara, Y., Leroi, A.M., *Ueno N.A C.
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Journal Title
EMBO J. 21
Pages: 1063-1073
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Ski is involved in transcriptional regulation by the repressor and full-length forms of Gli3.2002
Author(s)
Dai, P., Shinagawa, T., Nomura, T., Harada, J., Kaul, S.C., Wadhwa, R., Akimaru, H., Sasaki, H., Colmenares, C., *Ishii, S.
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Journal Title
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Nuclear localization of Duplin, a beta-catenin-binding protein, is essential for its inhibitory activity on the Wnt signaling pathway.2002
Author(s)
Kobayashi, M., Kishida, S., Fukui, A., Michiue, T., Miyamoto, Y., Okamoto, T., Yoneda, Y., Asashima, M., *Kikuchi, A.
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Journal Title
J. Biol. Chem. 277
Pages: 5816-5822
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Differentiation of embryonic stem cells is induced by GATA factors.2002
Author(s)
Fujikura, F, Yamamoto, e., Yonemura, S., Hosoda, K., Masui, S., Nakao, K., Miyazaki, J.-I., *Niwa, H.
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Journal Title
Genes Dev. 16
Pages: 784-789
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Oscillatory expression of the bHLH factor Hesl regulated by a negative feedback loop.2002
Author(s)
Hirata, H., Yoshiura, S., Ohtsuka, T., Bessho, Y., Harada, T., Yoshikawa, K., *Kageyama, R.
-
Journal Title
Science 298
Pages: 840-843
Description
「研究成果報告書概要(欧文)」より
-
[Journal Article] Reaper-mediated inhibition of DIAP1-induced Drosophila TRAF1 degradation leads to JNK activation.2002
Author(s)
Kuranaga, E., Kanuka, H., Igaki, T., Sawamoto, K., Ichijo, H., Okano, H., *Miura, M.
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Journal Title
Nature Cell Biol 4
Pages: 705-710
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] The transcription factor FoxH1 (FAST) mediates Nodal signaling during anterior-posterior patterning and node formation in the mouse.2001
Author(s)
Yamamoto, M., Meno, C., Sakai, Y., Shiratori, H., Mochida, K., Ikawa, Y., Saijoh, Y., Hamada, H.
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Journal Title
Genes Dev. 15
Pages: 1242-1256
Description
「研究成果報告書概要(和文)」より
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[Journal Article] The transcription factor FoxH1 (FAST) mediates Nodal signaling during anterior-posterior patterning and node formation in the mouse.2001
Author(s)
Yamamoto, M., Meno, C., Sakai, Y., Shiratori, H., Mochida, K., Ikawa, Y., Saijoh, Y., *Hamada, H.
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Journal Title
Genes Dev. 15
Pages: 1242-1256
Description
「研究成果報告書概要(欧文)」より
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