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2003 Fiscal Year Final Research Report Summary

Rotary coupling mechanism of two nano motors which constitute ATP Synthase

Research Project

Project/Area Number 13308036
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Functional biochemistry
Research InstitutionTokyo Institute of Technology

Principal Investigator

YOSHIDA Masasuke  Tokyo Institute of Technology, Chem. Res. Lab., Professor, 資源化学研究所, 教授 (90049073)

Project Period (FY) 2001 – 2003
KeywordsATP Synthase / Molecular Motor / F_1-ATPase / F_0 channel
Research Abstract

Major results are as follows.
1)A regulatory subunit, ε, binds ATP and it changes its conformation depending on the protonic electrochemical potential difference across the membrane.
2)By introducing Trp residue into the vicinity of the catalytic site on β subunits, we could clarify the origin of apparent negative cooperativity.
3)ATP binding per se drives 80 degree step motion before hydrolysis on the enzyme.
4)By using fluorescent ATP analogue, we could directly observe ATP binding and rotation simultaneously We found that once ATP binds, it remains bound until γ subunit rotates 240 degree.
5)By using magnetic beads and forcing F_1-ATPase to rotate in synthetic direction, we could show continuous ATP synthesis.

  • Research Products

    (46 results)

All Other

All Publications (46 results)

  • [Publications] Noji H, Yoshida M.: "The rotary machine in the cell ; ATP Synthase."J Biol Chem.. 276. 1665-1668 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tsunoda, S.P., Ageller, R., Yoshida, M., Capaldi, R.A.: "Rotation of the c subunit oligomer in fully functional F_1F_0"Proc Natl Acad Sci USA.. 98. 898-902 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hara, K.Y., Kato-Yamada, Y., Kikuchi, Y., Hisabori, T., Yoshida M.: "The role of the beta-DELSEED motif of F_1-ATPase."J.Biol.Chem.. 276. 23969-23973 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tsunoda, S.P., Rodgers, A.J.W., Ageller R, Wilce, M.C.J., Yoshida, M., Capaldi, R.A.: "Conformational changes of the ε subunit in the bacterial F_1F_0 ATP synthase provide a ratchet action to regulate this rotary motor enzyme."Proc.Natl.Acad.Sci.USA. 98. 6560-6564 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yasuda, R., Noji, H., Yoshida, M., Kinosita, K., Itoh, H.: "Resolution of distinct substeps by submillisecond kinetic analysis of F_1-ATPase"Nature. 410. 898-904 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ariga, T., Masaike, T., Noji, H., Yoshida, M.: "Stepping rotation of F_1-ATPase with one, two, or three altered catalytic sites that bind ATP only slowly;"J Biol Chem,. 277. 24870-24874 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Suzuki, T., Ueno, H., Mitome, N., Suzuki, J., Yoshida, M.: "F_0 of ATP synthase is a rotary proton channel, Obligatory coupling of proton translocation with rotation of c-subunit ring;"J Biol Chem. 277. 13281-13285 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Masaike, T., Muneyuki, E., Noji, H., Kinosita, K., Jr.Yoshida, M.: "F_1-ATPase changes its conformations upon phosphate release"J Biol Chem. 277. 21643-21649 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Imamura, H., Nakano, M., Noji, H., Muneyuki, E., Ohkuma, S., Yoshida, M.: "Evidence for rotation of V_1-ATPase"Proc Natl Acad Sci USA. 100. 2312-2315 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yokoyama, K., Nakano, M., Imamura, H., Yoshida, M., Tamakoshi, M.: "Subunit Arrangement in V-ATPase from Thermus thermophilus"J.Biol.Chem. 278. 24255-24258 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Bald D, Noji H, Yosbida M, Hirono-Hara Y, Hisabori T.: "Redox regulation of the rotation of F_1-ATP synthase."J Biol Chem.. 276. 39505-39507 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yoshida, M., Muneyuki, E., Hisabori, T.: "ATP synthase --- a marvelous rotary engine of the cell."Nature Review Mol.Cell Biol.. 2. 669-677 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hirono-Hara Y, Noji H, Nishiura M, Muneyuki E, Hara KY, Yasuda R, Kinosita K, Jr.Yoshida M.: "Pause and rotation of F_1-ATPase during catalysis."Proc Natl Acad Sci USA.. 98. 13649-13654 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tozawa K, Yagi H, Hisamatsu K, Ozawa K, Yashida M, Akutsu H.: "Functions and ATP-binding responses of the twelve histidine residues in the TF_1-ATPase beta subunit."J Biochem.. 130. 527-533 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Mitome N, Ono S, Suzuki T, Shimabukuro K, Muneyuki E, Yashida M.: "The presence of phosphate at a catalytic site suppresses the formation of the MgADP-inhibited form of F_1-ATPase."Eur J Biochem.. 269. 53-60 (2002)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kato-Yamada, Y., Yoshida, M.: "Isolated epsilon Subunit of Thermophilic F_1-ATPase Binds ATP"J.Biol.Chem. 278. 36013-36016 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Suzuki, T., Murakami, T., Iino, R., Suzuki, J., Ono, S., Shirakihara, Y., Yoshida M.: "F_0F_1-ATPase/synthase is geared to the synthesis mode by conformational rearrangement of subunit in response to proton motive force and ADP/ATP balance"J.Biol.Chem.. 278. 46840-46846 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ono S, Hara KY, Hirao J, Matsui T, Noji H, Yoshida M, Muneyuki E.: "Origin of apparent negative cooperativity of F_1-ATPase."Biochim Biophys Acta. 1607. 35-44 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shimabukuro, K., Yasuda, Y., Muneyuki, E., Hara, K.Y., Kinosita, K.Jr, Yoshida, M.: "Catalysis and rotation of F_1 motor ; cleavage of ATP at the catalytic site occurs in 1 ms before 40 degree substep rotation."Proc Natl Acad Sci USA. 100. 14731-14736 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Itoh H, Takahashi A, Adachi K, Noji H, Yasuda R, Yashida M, Kinosita K.: "Mechanically driven ATP synthesis by F_1-ATPase."Nature.. 427. 465-468 (2004)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Nishizaka T, Oiwa K, Noji H, Kimura S, Muneyuki E, Yoshida M, Kinosita K Jr.: "Chemomechanical coupling in F_1-ATPase revealed by simultaneous observation of nucleotide kinetics and rotation."Nat Struct Mol Biol.. 11. 142-148 (2004)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Noji H, Bald D, Yasuda R, Itoh H, Yoshida M, Kinosita K Jr.: "Purine but not pyrimidine nucleotides support rotation of F_1-ATPase."J Biol Chem.. 276. 25480-25486 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 宗行 英朗, 吉田 賢右: "シリーズ・ニューバイオフィジックスII-10 生物物理学とはなにか 第1章7.エネルギー変換:ATP合成酵素(曽我部正博, 郷信広編)"共立出版. 13 (2003)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 宗行英朗, 吉田賢右: "新ミトコンドリア学 第一章1・3エネルギー転換系と分子モーター(内海耕慥, 井上正康監修)"共立出版. 8 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Noji H, Yoshida M.: "The rotary machine in the cell ; ATP Synthase."J Biol Chem.. 276. 1665-1668 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tsunoda, S.P., Ageller, R., Yashida, M., Capaldi, R.A.: "Rotation of the c subunit oligomer in fully functional F_1F_0 ATP synthase."Proc Natl Acad Sci U S A.. 98. 898-902 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hara, K.Y., Kato-Yamada, Y., Kikuchi, Y., Hisabori, T., Yoshida M.: "The role of of the beta-DELSEED motif of F_1-ATPase."J. Biol. Chem.. 276. 23969-23973 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tsunoda, S.P., Rodgers, A.J.W., Ageller, R., Wilce, M.C.J., Yoshida, M., Capaldi, R A.: "Large conformational changes of the ε subunit in the bacterial F_1F_0 ATP synthase provide a ratchet action to regulate this rotary motor enzyme."Proc. Natl. Acad. Sci. USA. 98. 6560-6564 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yasuda, R., Noji, H., Yoshida, M., Kinosita, K., Itoh, H.: "Resolution of distinct substeps by submillisecond kinetic 'analysis of F_1-ATPase"Nature. 410. 898-904 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Noji H, Bald.D, Yasuda R, Itoh H, Yoshida M, Kinosita K Jr.: "Purine but not pyrimidine nucleotides support rotation of F_1-ATPase."J Biol Chem.. 276. 25480-25486 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Bald D, Noji H, Yoshida M, Hirono-Hara Y, Hisabori T.: "Redox regulation of the rotation of F_1-ATP synthase."J Biol Chem.. 276. 39505-39507 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yoshida, M., Muneyuki, E., Hisabori, T.: "ATP synthase--a marvelous rotary engine of the cell."Nature Review Mol. Cell Biol.. 2. 669-677 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hirono-Hara Y, Noji H, Nishiura M, Muneyuki E, Hara KY, Yasuda R, Kinosita K Jr, Yoshida M.: "Pause and rotation of F_1-ATPase during catalysis."Proc Natl Acad Sci U S A.. 98. 13649-13654 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tozawa K, Yagi H, Hisamatsu K, Ozawa K, Yoshida M, Akutsu H.: "Functions and ATP -binding responses of the twelve histidine residues in the TF_1-ATPase beta subunit."J Biochem.. 130. 527-533 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Mitome N, Ono S, Suzuki T, Shimabukuro K, Muneyuki E, Yoshida M.: "The presence of phosphate at a catalytic site suppresses the formation of the MgADP-inhibited form of F_1-ATPase."Eur J Biochem.. 269. 53-60 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ariga, T., Masaike, T., Noji, H., Yoshida, M.: "Stepping rotation of F_1-ATPase with one, two, or three altered catalytic sites that bind ATP only slowly;"J Biol Chem. 277. 24870-24874 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Suzuki, T., Ueno, H,.Mitome, N., Suzuki, J, Yoshida, M.: "F_0 of ATP synthase is a rotary proton channel. Obligatory coupling of proton translocation with rotation of csubunit ring;"J Biol Chem. 277. 13281-13285 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Imamura, H., Nakano, M., Noji, H., Muneyuki, E,.Ohkuma, S., Yoshida, M., Yokoyama.K.: "Evidence for rotation of V_1-ATPase"Proc Natl Acad Sci U S A. 100. 2312-2315 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yokoyama, K., Nakano, M., Imamura, H., Yoshida, M., Tamakoshi, M.: "Rotation of the Proteolipid Ring in the V-ATPase"J. Biol. Chem.. 278. 24255-24258 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yokoyama, K., Nagata, K., Imamura, H., Ohkuma, H., Yoshida, M., Tamakoshi, M.: "Subunit Arrangement in V-ATPase from Therm us thermophilus"J. Biol. Chem.. 278. 42686-42691 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kato-Yamada, Y., Yoshida, M.: "Isolated epsilon Subunit of Thermophilic F_1-ATPase Binds ATP"J. Biol. Chem.. 278. 36013-36016 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Suzuki, T., Murakami, T., Iino, R., Suzuki, J., Ono, S., Shirakihara, Y., Yoshida, M.: "F_0F_1-ATPase/synthase is geared to the synthesis mode by conformational rearrangement of subunit in response to proton motive force and ADP/ATP balance"J. Biol. Chem.. 278. 46840-46846 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ono S, Hara KY, Hirao J, Matsui T, Noji H, Yoshida M, Muneyuki E.: "Origin of apparent negative cooperativity of F_1-ATPase."Biochim Biophys Acta.. 1607. 35-44 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shimabukuro, K., Yasuda, Y., Muneyuki, E,.Hara, K.Y., Kinosita.K.Jr., Yoshida, M.: "Catalysis and rotation of F_1 motor ; cleavage of ATP at the catalytic site occurs in 1 ms before 40 degree substep rotation."Proc Natl Acad Sci USA. 100. 14731-14736 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Itoh H, Takahashi A, Adachi K, Noji H, Yasuda R, Yoshida M, Kinosita K.: "Mechanically driven ATP synthesis by F_1-ATPase."Nature.. 427(6973). 465-458 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Nishizaka T, Oiwa K, Noji H, Kimura S, Muneyuki B, Yoshida M, Kinosita K Jr.: "Chemomechanical coupling in F_1-ATPase revealed by simultaneous observation of nucleotide kinetics and rotation."Nat Struct Mol Biol.. 11(2). 142-148 (2004)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2005-04-19  

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