2006 Fiscal Year Final Research Report Summary
Identifications of small molecule drug-binding proteins by using the affinities
Project/Area Number |
16310155
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Research Category |
Grant-in-Aid for Scientific Research (B)
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Allocation Type | Single-year Grants |
Section | 一般 |
Research Field |
Living organism molecular science
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Research Institution | Tokyo University of Science |
Principal Investigator |
SUGAWARA Fumio Tokyo University of Science, Department of Applied Biological Science, Professor, 理工学部, 教授 (30192123)
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Project Period (FY) |
2004 – 2006
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Keywords | anti-cancer drug / camptothecin / etoposide / phage display / binding protein / receptor / SPR / QCM |
Research Abstract |
This research subject aimed to develop new and facile methods to identify drug targeted binding proteins. In 2004 and 2005, we studied on two anti-cancer drugs, camptothecin and etoposide as ligand to identify the binding proteins as receptors. The affinities between drug small molecules and binding proteins have been applied for our phase display screenings, which will give us high affinity phage particles displaying drug binding proteins and/or peptides. Based on the cDNA sequence data composed of the selected phages, the homology search with BLAST or FASTA program informed us that camptothecin receptor can be a prostaglandin receptor EP1 and etoposide receptor can be a transcription factor E2F. We established those bindings by SPR (surface plasmon resonance) and/or QCM (quartz crystal micro balance). In 2006, we improved two methods. First, we employed PEG (polyethylene glycerol) beads for organic synthesis to avoid non-specific bindings between drug and proteins. Second, we immobilized ligand on a gold QCM sensor chip to afford "self-assembled membrane". In either case, we successfully identified FKBP12 as a receptor of SLF as a ligand. Overall, we have successfully identified new target molecules of anti-cancer drugs with our improved methods. It can be expected to identify both binding proteins and receptors for drugs and other biological important small molecules.
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Research Products
(118 results)
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[Journal Article] Anti-tumor effects of dehydroaltenusin, a specific inhibitor of mammalian DNA polymerase alpha2007
Author(s)
Maeda N, Kokai Y, Ohtani S, Sahara H, Kuriyama I, Kamisuki S, Takahashi S, Sakaguchi K, Sugawara F, Yoshida H, Sato N, Mizushina Y
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Journal Title
Biochem Biophys Res Commun. 352
Pages: 390-396
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Structure-activity relationship of a glycolipid, sulfoquinovosyl diacylglycerol, with the DNA binding activity of p532007
Author(s)
Iijima H, Kasai N, Chiku H, Takeuchi T, Kuramochi K, Hanashima S, Kobayashi S, Sugawara F, Sakaguchi K, Yoshida H, Mizushina Y
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Journal Title
Int J Mol Med 19(1)
Pages: 41-48
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Anti-tumor effects of dehydroaltenusin, a specific inhibitor of mammalian DNA polymerase alpha.2007
Author(s)
Maeda N, Kokai Y, Ohtani S, Sahara H, Kuriyama I, Kamisuki S, Takahashi S, Sakaguchi K, Sugawara F, Yoshida H, Sato N, Mizushina Y.
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Journal Title
Biochem Biophys Res Commun. 352
Pages: 390-6
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Structure-activity relationship of a glycolipid, sulfoquinovosyl diacylglycerol, with the DNA binding activity of p53.2007
Author(s)
Iijima H, Kasai N, Chiku H, Takeuchi T, Kuramochi K, Hanashima S, Kobayashi S, Sugawara F, Sakaguchi K, Yoshida H, Mizushina Y.
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Journal Title
Int J Mol Med. 19(1)
Pages: 41-8
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Identification of Antibiotic Clarithromycin Binding Peptide Displayed by T7 Phage Particles.2006
Author(s)
Morimura T, Noda N, Kato Y, Watanabe T, Saitoh T, Yamazaki T, Takata K, Aoki S, Ohta K, Ohshige M, Sakaguchi K, Sugawara F
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Journal Title
J Antibiot. 59
Pages: 625-632
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Structural relationship of curcumin derivatives binding to the BRCT domain of human DNA polymerase lambda.2006
Author(s)
Takeuchi T, Ishidoh T, Iijima H, Kuriyama I, Shimazaki N, Koiwai O, Kuramochi K, Kobayashi S, Sugawara F, Sakaguchi K, Yoshida H, Mizushina Y
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Journal Title
Genes Cells. 11
Pages: 223-235
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Total synthesis of (-)-neoechinulin A2006
Author(s)
Aoki T, Kamisuki S, Kimoto M, Ohnishi K, Takakusagi Y, Kuracmohi K, Takeda Y, Nakazaki A, Kuroiwa K, Ohuchi T, Sugawara F, Arai T, Kobayashi S
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Journal Title
Synlett. 2006
Pages: 677-680
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Structural relationship of curcumin derivatives binding to the BRCT domain of human DNA polymerase lambda2006
Author(s)
Takeuchi T, Ishidoh T, Iijima H, Kuriyama I, Shimazaki N, Koiwai O, Kuramochi K, Kobayashi S, Sugawara F, Sakaguchi K, Yoshida H, Mizushina Y
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Journal Title
Genes Cells. 11
Pages: 223-235
Description
「研究成果報告書概要(和文)」より
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[Journal Article] 5-(Hydroxymethyl)-2-furfural : a selective inhibitor of DNA polymerase lambda and terminal deoxynucleotidyltransferase.2006
Author(s)
Mizushina Y, Yagita E, Kuramochi K, Kuriyama I, Shimazaki N, Koiwai O, Uchiyama Y, Yomezawa Y, Sugawara F, Kobayashi S, Sakaguchi K, Yoshida H
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Journal Title
Arch Biochem Biophys. 446
Pages: 69-76
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Identification of Antibiotic Clarithromycin Binding Peptide Displayed by T7 Phage Particles.2006
Author(s)
Morimura T, Noda N, Kato Y, Watanabe T, Saitoh T, Yamazaki T, Takata K, Aoki S, Ohta K, Ohshige M, Sakaguchi K, Sugawara F.
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Journal Title
J Antibiot. 59(10)
Pages: 625-632
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Structural relationship of curcumin derivatives binding to the BRCT domain of human DNA polymerase lambda.2006
Author(s)
Takeuchi T, Ishidoh T, Iijima H, Kuriyama I, Shimazaki N, Koiwai O, Kuramochi K, Kobayashi S, Sugawara F, Sakaguchi K, Yoshida H, Mizushina Y.
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Journal Title
Genes Cells. 11(3)
Pages: 223-35
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Total synthesis of (-)-neoechinulin A.2006
Author(s)
Aoki T, Kamisuki S, Kimoto M, Ohnishi K, Takakusagi Y, Kuracmohi K, Takeda Y, Nakazaki A, Kuroiwa K, Ohuchi T, Sugawara F, Arai T, Kobayashi S.
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Journal Title
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Structural relationship of curcumin derivatives binding to the BRCT domain of human DNA polymerase lambda.2006
Author(s)
Takeuchi T, Ishidoh T, Iijima H, Kuriyama I, Shimazaki N, Koiwai O, Kuramochi K, Kobayashi S, Sugawara F, Sakaguchi K, Yoshida H, Mizushina Y
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Journal Title
Genes Cells. 11(3)
Pages: 223-35
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] 5-(Hydroxymethyl)-2-furfural : a selective inhibitor of DNA polymerase lambda and terminal deoxynucleotidyltransferase.2006
Author(s)
Mizushina Y, Yagita E, Kuramochi K, Kuriyama I, Shimazaki N, Koiwai O, Uchiyama Y, Yomezawa Y, Sugawara F, Kobayashi S, Sakaguchi K, Yoshida H.
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Journal Title
Arch Biochem Biophys. 446(1)
Pages: 69-76
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Mechanism of the immunosuppressive effect in vivo of novel immunosuppressive drug beta-SQAG9, which inhibits the response of the CD62L+ T-cell subset.2005
Author(s)
Takenouchi M, Sahara H, Yamamoto Y, Matsumoto Y, Imai A, Fujita T, Tamura Y, Takahashi N, Gasa S, Matsumoto K, Ohta K, Sugawara F, Sakaguchi K, Jimbow K, Sato N
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Journal Title
Transplant Proc. 37(1)
Pages: 139-142
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Structural analysis of epolactaene derivatives as DNA polymerase inhibitors and anti-inflammatory compounds.2005
Author(s)
Mizushina Y, Kuramochi K, Ikawa H, Kuriyama I, Shimazaki N, Takemura M, Oshige M, Yoshida H, Koiwai O, Sugawara F, Kobayashi S, Sakaguchi K
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Journal Title
Int J Mol Med. 15(5)
Pages: 785-793
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Structural analysis of epolactaene derivatives as DNA polymerase inhibitors and anti-inflammatory compounds.2005
Author(s)
Mizushina Y, Kuramochi K, Ikawa H, Kuriyama I, Shimazaki N, Takemura M, Oshige M, Yoshida H, Koiwai O, Sugawara F, Kobayashi S, Sakaguchi K.
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Journal Title
Int. J. Mol. Med. 15
Pages: 785-93
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Mechanism of the immunosuppressive effect in vivo of novel immunosuppressive drug beta-SQAG9, which inhibits the response of the CD62L+ T-cell subset.2005
Author(s)
Takenouchi M, Sahara H, Yamamoto Y, Matsumoto Y, Imai A, Fujita T, Tamura Y, Takahashi N, Gasa S, Matsumoto K, Ohta K, Sugawara F, Sakaguchi K, Jimbow K, Sato N.
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Journal Title
Transplant. Proc. 37
Pages: 139-42
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Inhibition of CD62L+ T-cell response in vitro via a novel sulfo-glycolipid, beta-SQAG9 liposome that binds to CD62L molecule on the cell surface.2004
Author(s)
Yamamoto Y, Sahara H, Takenouchi M, Matsumoto Y, Imai A, Fujita T, Tamura Y, Takahashi N, Gasa S, Matsumoto K, Ohta K, Sugawara F, Sakaguchi K, Jimbow K, Sato N
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Journal Title
Cell Immuno 232(1-2)
Pages: 105-115
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Design of vesicles of 1,2-di-O-acyl-3-O-(beta-D-sulfoquinovosyl)-glyceride bearing two stearic acids (beta-SQDG-C(18)), a novel immunosuppressive drug.2004
Author(s)
Matsumoto K, Takenouchi M, Ohta K, Ohta Y, Imura T, Oshige M, Yamamoto Y, Sahara H, Sakai H, Abe M, Sugawara F, Sato N, Sakaguchi K
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Journal Title
Biochem Pharmacol. 68
Pages: 2379-2386
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Synthetic sulfonolipids deduced from sulfonoquinovosyl diacylglycerols of sea urchin reduces hepatic ischemia-reperfusion injury in rats.2004
Author(s)
Tsuruma T, Sahara H, Takenouchi M, Yagihashi A, Iwayama Y, Shima H, Furuhata T, Torigoe T, Hanashima S, Yamazaki T, Sugawara F, Mizushina Y, Ohta K, Sakaguchi K, Sato N, Hirata K
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Journal Title
Transplant Proc 36
Pages: 1965-1969
Description
「研究成果報告書概要(和文)」より
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[Journal Article] The effects of dehydroaltenusin, a novel mammalian DNA polymerase alpha inhibitor, on cell proliferation and cell cycle progression.2004
Author(s)
Murakami-Nakai C, Maeda N, Yonezawa Y, Kuriyama I, Kamisuki S, Takahashi S, Sugawara F, Yoshida H, Sakaguchi K, Mizushina Y
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Journal Title
Biochim. Biophys. Acta. 1674
Pages: 193-199
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Taxol derivatives are selective inhibitors of DNA polymerase alpha.2004
Author(s)
Oshige M, Takenouchi M, Kato Y, Kamisuki S, Takeuchi T, Kuramochi K, Shiina I, Suenaga Y, Kawakita Y, Kuroda K, Sato N, Kobayashi S, Sugawara F, Sakaguchi K
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Journal Title
Bioorg Med Chem. 12
Pages: 2597-2601
Description
「研究成果報告書概要(和文)」より
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[Journal Article] Inhibition of CD62L(+) T-cell response in vitro via a novel sulfo-glycolipid, beta-SQAG9 liposome that binds to CD62L molecule on the cell surface.2004
Author(s)
Yamamoto Y, Sahara H, Takenouchi M, Matsumoto Y, Imai A, Fujita T, Tamura Y, Takahashi N, Gasa S, Matsumoto K, Ohta K, Sugawara F, Sakaguchi K, Jimbow K, Sato N.
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Journal Title
Cell Immunol. 232
Pages: 105-115
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Synthetic sulfonolipids deduced from sulfonoquinovosyldiacylglycerols of sea urchin reduces hepatic ischemia-reperfusion injury in rats.2004
Author(s)
Tsuruma T, Sahara H, Takenouchi M, Yagihashi A, Iwayama Y, Shima H, Furuhata T, Torigoe T, Hanashima S, Yamazaki T, Sugawara F, Mizushina Y, Ohta K, Sakaguchi K, Sato N, Hirata K.
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Journal Title
Transplant. Proc. 36
Pages: 1965-1969
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Design of vesicles of 1,2-di-O-acyl-3-O-(beta-D-sulfoquinovosyl)-glyceride bearing two stearic acids (beta-SQDG-C(18)), a novel immunosuppressive drug.2004
Author(s)
Matsumoto K, Takenouchi M, Ohta K, Ohta Y, Imura T, Oshige M, Yamamoto Y, Sahara H, Sakai H, Abe M, Sugawara F, Sato N, Sakaguchi K.
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Journal Title
Biochem. Pharmacol. 68
Pages: 2379-2386
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] The effects of dehydroaltenusin, a novel mammalian DNA polymerase alpha inhibitor, on cell proliferation and cell cycle progression.2004
Author(s)
Murakami-Nakai C, Maeda N, Yonezawa Y, Kuriyama I, Kamisuki S, Takahashi S, Sugawara F, Yoshida H, Sakaguchi K, Mizushina Y.
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Journal Title
Biochim. Biophys. Acta. 1674
Pages: 193-199
Description
「研究成果報告書概要(欧文)」より
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[Journal Article] Taxol derivatives are selective inhibitors of DNA polymerase alpha.2004
Author(s)
Oshige M, Takenouchi M, Kato Y, Kamisuki S, Takeuchi T, Kuramochi K, Shiina I, Suenaga Y, Kawakita Y, Kuroda K, Sato N, Kobayashi S, Sugawara F, Sakaguchi K.
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Journal Title
Bioorg. Med. Chem. 12
Pages: 2597-2601
Description
「研究成果報告書概要(欧文)」より
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