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2009 Fiscal Year Final Research Report

System-level Understanding of Intercellular Interactions

Research Project

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Project/Area Number 18016031
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

UEDA Hiroki  The Institute of Physical and Chemical Research, システムバイオロジー研究チーム, チームリーダー (20373277)

Co-Investigator(Kenkyū-buntansha) UKAI Hideki  独立行政法人理化学研究所, システムバイオロジー研究チーム, 研究員 (70391878)
Project Period (FY) 2006 – 2009
Keywordsシステムバイオロジー / 再構成 / 体内時計 / 細胞間情報伝達 / 一細胞イメージング / シンギュラリティー / 光制御 / 位相制御
Research Abstract

Central clock (the suprachiasmatic nucleus ; SCN) of mammal produces robust oscillation even in the presence of internal noise without referring to external time cues. Ueda et al proposed stochastic model of intercellular coupling mechanism, and theoretically indicated that the robustness of central clock is caused by intercellular interaction of clock cells (J.Theor.Biol.(2002) 216, 501-512). In this project, we tried to physically simulate the model by synthesis of intercellular interaction mechanism in peripheral clock cells in order to proof the model.

  • Research Products

    (32 results)

All 2009 2008 2007 2006 2005 Other

All Journal Article (5 results) (of which Peer Reviewed: 5 results) Presentation (24 results) Book (3 results)

  • [Journal Article] Proof-by-Synthesis of the Transcriptional Logic of Mammalian Circadian Clocks2008

    • Author(s)
      Ukai-Tadenuma, M., Kasukawa, T., Ueda, H.R.
    • Journal Title

      Nature Cell Biology 10

      Pages: 1154-1163

    • Peer Reviewed
  • [Journal Article] Melanopsin-dependent photo-perturbation reveals desynchronization underlying the singularity of mammalian circadian clocks2007

    • Author(s)
      Ukai, H., Kobayashi, T.J., Nagano, M., Masumoto, K., Sujino, M., Kondo, T., Yagita K., Shigeyoshi, Y., Ueda, H.R.
    • Journal Title

      Nature Cell Biology 9

      Pages: 1327-1334

    • Peer Reviewed
  • [Journal Article] A functional genomics strategy reveals clockwork orange as a transcriptional regulator in the Drosophila circadian clock.2007

    • Author(s)
      Matsumoto, A., Ukai-Tadenuma, M., Yamada, R.G., Houl, J., Uno, D.K., Kasukawa, T., Dauwalder, B., Itoh, T., Takahashi, K., Ueda, R., Hardin, P., Tanimura, T, * Ueda, H.R.
    • Journal Title

      Genes & Development 21(13)

      Pages: 1687-700

    • Peer Reviewed
  • [Journal Article] Feedback repression is required for mammalian circadian clock function2006

    • Author(s)
      Sato, T.K., Yamada, R.G., Ukai, H., Baggs, J.E., Miraglia, L.J., Kobayashi, T.J., Welsh, D.K., Kay, S.A., Ueda, H.R. *, Hogenesch, J.B.
    • Journal Title

      Nature Genetics 38

      Pages: 312-319

    • Peer Reviewed
  • [Journal Article] System-level identification of transcriptional circuits underlying mammalian circadian clocks.2005

    • Author(s)
      Ueda, H.R., Hayashi, S., Chen, W.B., Sano, M., Machida, M., Shigeyoshi, Y., Iino, M., Hashimoto, S.
    • Journal Title

      Nature Genetics 37(2)

      Pages: 187-192

    • Peer Reviewed
  • [Presentation] 中枢時計を創る2009

    • Author(s)
      鵜飼英樹
    • Organizer
      細胞を創る研究会
    • Place of Presentation
      東京大学医学部鉄門記念講堂(東京)
    • Year and Date
      2009-10-02
  • [Presentation] 光と体内時計2009

    • Author(s)
      Ueda, H. R
    • Organizer
      太陽紫外線防御研究会
    • Place of Presentation
      メルパルク京都(京都)
    • Year and Date
      2009-07-27
  • [Presentation] 融合型研究による慨日リズムSingularity現象の動作機構解明2009

    • Author(s)
      鵜飼英樹
    • Organizer
      第一回定量生物学の会年会
    • Place of Presentation
      東京大学生産技術研究所(東京)
    • Year and Date
      2009-01-11
  • [Presentation] 生物発光で紐解く哺乳類の概日時計の分子・細胞ネットワークMOLECULAR AND CELLULAR NETWORKS OF MAMMALIAN CIRCADIAN CLOCK REVEALED BY BIOLUMINESCENCE. MOLECULAR AND CELLULAR NETWORKS OF MAMMALIAN CIRCADIAN CLOCK REVEALED BY BIOLUMINESCENCE.2008

    • Author(s)
      Ueda, H. R
    • Organizer
      第46回日本生物物理学会年会
    • Place of Presentation
      福岡国際会議場(福岡)
    • Year and Date
      2008-12-03
  • [Presentation] 概日リズムモニターの現状とリズム測定におけるニーズ2008

    • Author(s)
      鵜飼英樹
    • Organizer
      先進ものづくり技術によるアナライザーキーコンポーネント開発基盤の構築状況
    • Place of Presentation
      理化学研究所和光本所(埼玉)
    • Year and Date
      2008-08-07
  • [Presentation] Systems Biology of Mammalian Circadian Clocks2008

    • Author(s)
      Ueda, H. R
    • Organizer
      上原記念生命科学財団国際シンポジウム"システムズバイオロジーによる、複雑な生命システム理解への挑戦
    • Place of Presentation
      ハイアットリージェンシー東京(東京)
    • Year and Date
      2008-06-30
  • [Presentation] SYSTEMS BIOLOGY OF MAMMALIAN CIRCADIAN CLOCKS2008

    • Author(s)
      Ueda, H. R
    • Organizer
      20th Anniversary Meeting Society for Research on Biological Rhythms
    • Place of Presentation
      Florida, USA
    • Year and Date
      2008-05-11
  • [Presentation] SYSTEMS BIOLOGY OF MAMMALIAN CIRCADIAN CLOCKS" ESF-UB conference in Biomedicine2008

    • Author(s)
      Ueda, H. R
    • Organizer
      SYSTEMS BIOLOGY
    • Place of Presentation
      Sant Feliu de Guixols, Spain
    • Year and Date
      2008-04-12
  • [Presentation] 哺乳類体内時計の制御と設計2007

    • Author(s)
      上田泰己
    • Organizer
      第30回日本分子生物学会年会・第80回日本生化学会大会合同大会
    • Place of Presentation
      パシフィコ横浜(横浜)
    • Year and Date
      2007-12-11
  • [Presentation] 動的で複雑な生命システム理解のための機能ゲノミクス2007

    • Author(s)
      上田泰己
    • Organizer
      第19回分子糖尿病学シンポジウム
    • Place of Presentation
      神戸国際会議場(神戸)
    • Year and Date
      2007-12-08
  • [Presentation] Control and Design of Mammalian Circadian Clocks2007

    • Author(s)
      Ueda, H. R
    • Organizer
      Pasteur CDB jont meeting
    • Place of Presentation
      Paris, France
    • Year and Date
      2007-11-28
  • [Presentation] 中枢時計を創る2007

    • Author(s)
      鵜飼英樹
    • Organizer
      細胞を創る」研究会0. 0
    • Place of Presentation
      日本科学未来館(東京)
    • Year and Date
      2007-11-25
  • [Presentation] Desynchronization Underlying the Singularity of Mammalian Circadian Clocks2007

    • Author(s)
      鵜飼英樹
    • Organizer
      第14回日本時間生物学会学術大会
    • Place of Presentation
      京王プラザホテル(東京)
    • Year and Date
      2007-11-07
  • [Presentation] Identify, Control and Design Cellular Clocks2007

    • Author(s)
      Ueda, H. R
    • Organizer
      ndo-JSPS-CDB Joint Meeting
    • Place of Presentation
      理化学研究所発生・再生科学総合研究センター(神戸)
    • Year and Date
      2007-10-23
  • [Presentation] CONTROL AND DESIGN OF MAMMALIAN CLOCKS2007

    • Author(s)
      Hiroki R
    • Organizer
      9th Functional Genomics: Synthetic Biology
    • Place of Presentation
      Goteborg, Sweden
    • Year and Date
      2007-08-27
  • [Presentation] The Underlying Mechanism for Singularity Behavior of Circadian Clock2007

    • Author(s)
      Ueda, H. R
    • Organizer
      KITP Program: Biological Switches and Clocks
    • Place of Presentation
      Santa Barbara, USA
    • Year and Date
      2007-07-10
  • [Presentation] CONTROL AND DESIGN OF MAMMALIAN CLOCKS" Synthetic Biology 3. 02007

    • Author(s)
      Ueda, H. R
    • Organizer
      Conference
    • Place of Presentation
      Zurich, Switzerland
    • Year and Date
      2007-06-26
  • [Presentation] CONTROL AND DESIGN OF MAMMALIAN CLOCKS2007

    • Author(s)
      Ueda, H. R
    • Organizer
      Cold Spring Harbor Laboratory 72nd Symposium: Clocks & Rhythms meeting
    • Place of Presentation
      New York, USA
    • Year and Date
      2007-05-30
  • [Presentation] 細胞集団の振る舞いとして理解する概日時計2007

    • Author(s)
      上田泰己
    • Organizer
      第40回日本発生生物学会・第59回日本細胞生物学会合同大会
    • Place of Presentation
      福岡国際会議場(福岡)
    • Year and Date
      2007-05-29
  • [Presentation] 細胞集団の振る舞いとして理解する概日時計2007

    • Author(s)
      鵜飼英樹
    • Organizer
      第59回細胞生物学会・第40回発生生物学会合同大会
    • Place of Presentation
      福岡国際会議場(福岡)
    • Year and Date
      2007-05-29
  • [Presentation] 一細胞発光測定で見えてきたもの~概日時計システムの例~2006

    • Organizer
      分子細胞イメージングと疾患・創薬研究セミナーin神戸
    • Place of Presentation
      ニチイ学館神戸ポートアイランドセンター(神戸)
    • Year and Date
      2006-10-20
  • [Presentation] Analysis and Synthesis of Circadian Clock2006

    • Author(s)
      Ueda, H. R
    • Organizer
      International Conference on Systems Biology(ICSB)
    • Place of Presentation
      Yokohama, Japan
    • Year and Date
      2006-10-09
  • [Presentation] Circadian rhythm2006

    • Author(s)
      Ueda, H. R
    • Organizer
      Asia/Pacific Summer School on Computational Biology
    • Place of Presentation
      Pohang, Korea
    • Year and Date
      2006-07-08
  • [Presentation] From Analysis to Synthesis of Mammalian Circadian Clocks2006

    • Author(s)
      Ueda, H. R
    • Organizer
      10th Biennial Meeting
    • Place of Presentation
      Florida, USA
    • Year and Date
      2006-05-22
  • [Book] 生体の科学2008

    • Author(s)
      Ukai, H., Kobayashi, TJ., Ueda, HR.
    • Total Pages
      2
    • Publisher
      医学書院
  • [Book] バイオサイエンスとインダストリー2008

    • Author(s)
      Ukai, H., Kobayashi, TJ., Ueda, HR.
    • Total Pages
      7
    • Publisher
      (財)バイオインダストリー協会
  • [Book]

    • Author(s)
      上田泰己
    • Publisher
      時間生物学会

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Published: 2011-06-18   Modified: 2016-04-21  

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