• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to project page

2007 Fiscal Year Final Research Report Summary

Functional analyses of heme-DNA coordination complex and its implication for novel functional materials

Research Project

Project/Area Number 18550148
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemistry related to living body
Research InstitutionFukuoka Institute of Technology (2007)
University of Tsukuba (2006)

Principal Investigator

MITA Hajime  Fukuoka Institute of Technology, Faculty of Engineering, Professor (00282301)

Project Period (FY) 2006 – 2007
KeywordsG-quadruplex DNA / function and structure / Redox potential / Axial ligand / heme / dimerization / NMR / thermodynamics
Research Abstract

A G-quadruplex DNA is composed of stacked G-quartets, each of which involves the planar association of four guanine bases. The size and planarity of a G-quartet are well-suited for interacting with a porphyrin ring through π-π stacking. The complexation of G-quadruplex DNAs with porphyrin or metal-porphyrin derivatives has been studied to characterize their molecular recognition of each other as well as to, create catalytic DNAs that exhibit hemoprotein functions. We have demonstrated the formation of a stable coordination complex between heme, the iron(III)-protoporphyrin IX complex, and a parallel G-quadruplex DNA assembled from a single repeat sequence of the human telomere, TTAGGG. The heme-DNA complex was found to be remarkably similar, in various spectroscopic and functional properties, to hemoprotein such as myoglobin.

  • Research Products

    (38 results)

All 2007 2006

All Journal Article (20 results) (of which Peer Reviewed: 8 results) Presentation (18 results)

  • [Journal Article] Roles of a short connecting disulfide bond in the stability and function of psychrophilic Shewanella violacea cytochrome c_52007

    • Author(s)
      Ogawa, K.
    • Journal Title

      Extremophiles 11

      Pages: 797-806

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Thermodynamics of dimerization of parallel quadruplex DNAs through the end-to-end stacking of 3'-terminal G-quartets2007

    • Author(s)
      Sakuma, N.
    • Journal Title

      Nucleci Acid Symp Ser. 51

      Pages: 245-246

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] 四重鎖DNAのダイナミクスとポルフィリン誘導体との相互作用2007

    • Author(s)
      山本 泰彦
    • Journal Title

      生物物理 47

      Pages: 23-28

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Roles of a short connecting disulfide bond in the stability and function of psychrophilic Shewanella violacea cytochrome c5.2007

    • Author(s)
      Ogawa, K
    • Journal Title

      Extremophiles 11

      Pages: 797-806

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Thermodynamics of dimerization of parallel quadruplex DNAs through the end-to-end stacking of 3'-terminal G-quartets.2007

    • Author(s)
      Sakuma, N.
    • Journal Title

      Nucleci Acid Symp Ser. 51

      Pages: 245-246

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Dimerization of parallel G-quadruplex DNA formed from TTAGGG and interaction between G-quadruplex DNA and porphyrin derivatives.2007

    • Author(s)
      Yamamoto, Y.
    • Journal Title

      Seibutu-Buturi 47

      Pages: 23-28

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] cDNA-derived amino acid sequences of myoglobins from nine species of whales and dolphins2006

    • Author(s)
      Iwanami, K.
    • Journal Title

      Comp.Biochem.Physiol B145

      Pages: 249-256

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Influence of a single amide group on the redox function of Pseudomonas aeruginosa cytochrome c_<551>2006

    • Author(s)
      Takahashi, Y.
    • Journal Title

      Chem.Lett. 35

      Pages: 528-529

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Formation of a complex of 5,10,15,20-tetrakis(N-methylpyridinium-4-yl)-21H,23H-porphyrin with G-quadruplex DNA2006

    • Author(s)
      Mita, H.
    • Journal Title

      Biochemistry 45

      Pages: 6765-6772

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Exogenous ligand binding property of a heme-DNA coordination complex2006

    • Author(s)
      Ohyama, T.
    • Journal Title

      Chem.Lett. 35

      Pages: 126-127

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Further enhancement of the thermostability of Hydrogenobacter thermophilus cytochrome c_<552>2006

    • Author(s)
      Takahashi, Y.
    • Journal Title

      Biochemistry 45

      Pages: 11005-11011

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] A spectroscopic index for estimating the age of amber2006

    • Author(s)
      Kimura, H.
    • Journal Title

      Bull.Chem.Soc.Jpn 79

      Pages: 451-453

    • Description
      「研究成果報告書概要(和文)」より
    • Peer Reviewed
  • [Journal Article] Effects of various cations on the dynamic and thermodynamics of the dimerization of G-quadruplex DNA2006

    • Author(s)
      Mita, H.
    • Journal Title

      Nucleic Acids Symp.Ser. 50

      Pages: 191-192

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] cDNA-derived amino acid sequences of myoglobins from nine species of whales and dolphins.2006

    • Author(s)
      Iwanami, K.
    • Journal Title

      Comp. Biochem. Physiol. B145

      Pages: 249-256

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Further enhancement of the thermostability of Hydrogenobacter therm ophilus cytochrome c552.2006

    • Author(s)
      Takahashi, Y.
    • Journal Title

      Biochemistry 45

      Pages: 11005-11011

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Formation of a complex of 5, 10, 1 5, 20-tetrakis(N-methylpyridinium-4-yl)-2 1H, 23H-porphyrin with G-quadruplex DNA.2006

    • Author(s)
      Mita, H
    • Journal Title

      Biochemistry 45

      Pages: 6765-6772

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Exogenous ligand binding property of a heme-DNA coordination complex.2006

    • Author(s)
      Ohyama, T.
    • Journal Title

      Chem. Lett. 35

      Pages: 126-127

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Influence of a single amide group on the redox function of Pseudomonas aeruginosa cytochrome c551.2006

    • Author(s)
      Takahashi, Y.
    • Journal Title

      Chem. Lett. 35

      Pages: 528-529

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] A spectroscopic index for estimating the age of amber.2006

    • Author(s)
      Kimura, H.
    • Journal Title

      Bull. Chem. Soc. Jpn. 79

      Pages: 451-453

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Effects of various cations on the dynamic and thermodynamics of the dimerization of G-quadruplex DNA.2006

    • Author(s)
      Mita, H.
    • Journal Title

      Nucleic Acids Symp. Ser. 50

      Pages: 191-192

    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Thermodynamics of dimerization of parallel quadruplex DNAs through the end-to-end stacking of 3'-terminal G-quartets2007

    • Author(s)
      Sakuma, N.
    • Organizer
      5th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      東京大学
    • Year and Date
      2007-11-20
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Thermodynamics of dimerization of parallel quadruplex DNAs through the end-to-end stacking of 3'-terminal G-quartets.2007

    • Author(s)
      Sakuma, N.
    • Organizer
      5th International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      Uviv. Tokyo, Japan
    • Year and Date
      2007-11-20
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Dimerization of Parallel G-quadruplex DNAs Formed from d(TTAG3)and the Related Sequences2007

    • Author(s)
      Sakuma, N.
    • Organizer
      16th Triennial Conference for the International Society of Magnetic Resonance
    • Place of Presentation
      Howard Beach Resort Kenting,Taiwan
    • Year and Date
      2007-10-15
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Dimerization of Parallel G-quadruplex DNAs Formed from d(TTAG3) and the Related Sequences.2007

    • Author(s)
      Sakuma, N.
    • Organizer
      16th Triennial Conference for the International Society of Magnetic Resonance
    • Place of Presentation
      Howard Beach Resort Kenting, Taiwan
    • Year and Date
      2007-10-15
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Systematic arrangement of heme complexes in the framework of coordination space provided by G-quadruplex DNA2006

    • Author(s)
      Yamamoto, Y.
    • Organizer
      2nd International Symposium on Chemistry of Coordination Space
    • Place of Presentation
      Fukuoka,Japan
    • Year and Date
      20061215-16
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Systematic arrangement of heme complexes in the framework of coordination space provided by G-quadruplex DNA.2006

    • Author(s)
      Yamamoto, Y.
    • Organizer
      2nd International Symposium on Chemistry of Coordination Space
    • Place of Presentation
      Fukuoka, Japan
    • Year and Date
      20061215-16
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Enhancement of the thermostability of Hydrogenobacter thermophilus Cytochrome c_552 through reinforcement of the hydrophobic core of the protein interior2006

    • Author(s)
      Yamamoto, Y.
    • Organizer
      9th International Symposium on Applied Bioinorganic Chemistry
    • Place of Presentation
      Napoli,Italy
    • Year and Date
      20061202-05
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Enhancement of the thermostability of Hydrogenobacter thermophilus Cytochrome c552 through reinforcement of the hydrophobic core of the protein interior.2006

    • Author(s)
      Yamamoto, Y.
    • Organizer
      9th International Symposium on Applied Bioinorganic Chemistry
    • Place of Presentation
      Napoli, Italy
    • Year and Date
      20061202-05
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Structural and thermodynamic analyses of dimerization of G-quadruplex DNA and effects of various cations on the rmodynamics of the dimerization2006

    • Author(s)
      Mita, H.
    • Organizer
      XXIIND International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Gottingen,Germany
    • Year and Date
      20060820-25
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Characterization of Internal Dynamics of Thermophile Hydrogenobacter thermophilus Cytochrome c Using High Pressure NMR2006

    • Author(s)
      Takayama, S.J.
    • Organizer
      XXIIND International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Gottingen,Germany
    • Year and Date
      20060820-25
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Structural and thermodynamic analyses of dimerization of G-quadruplex DNA and effects of various cations on the thermodynamics of the dimerization.2006

    • Author(s)
      Mita, H.
    • Organizer
      XXIIND International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Gottingen, Germany
    • Year and Date
      20060820-25
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Characterization of Internal Dynamics of Thermophile Hydrogenobacter thermophilus Cytochrome c Using High Pressure NMR.2006

    • Author(s)
      Takayama, S. J.
    • Organizer
      XXIIND International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Gottingen Germany
    • Year and Date
      20060820-25
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Enhancement of thermostability of H.thermophilus cytochrome c_552 through stabilization of hydrophobic core2006

    • Author(s)
      Takayama, S.J.
    • Organizer
      4th International Conference on Porphyrins and Phthalocyanines
    • Place of Presentation
      Rome,Italy
    • Year and Date
      20060702-07
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Non-native heme coordination structure emerging upon guaniding hydrochloric acid induced unfolding of Pseudomonas aeruginosa ferricytochrome c_5512006

    • Author(s)
      Tai, H.
    • Organizer
      4th International Conference on Porphyrins and Phthalocyanines
    • Place of Presentation
      Rome,Italy
    • Year and Date
      20060702-07
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Influence of a single amide group in the close proximity of heme on the redox function of Pseudomonas aeruginosa cytochrome c_5512006

    • Author(s)
      Takahasi, Y.
    • Organizer
      4th International Conference on Porphyrins and Phthalocyanines
    • Place of Presentation
      Rome,Italy
    • Year and Date
      20060702-07
    • Description
      「研究成果報告書概要(和文)」より
  • [Presentation] Enhancement of thermostability of H. thermophilus cytochrome c552 through stabilization of hydrophobic core.2006

    • Author(s)
      Takayama, S. J.
    • Organizer
      4th International Conference on Porphyrins and Phthalocyanines
    • Place of Presentation
      Rome, Italy
    • Year and Date
      20060702-07
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Non-native heme coordination structure emerging upon guanidine hydrochloric acid induced unfolding of Pseudomonas aeruginosa ferricytochrome c551.2006

    • Author(s)
      Tai, H.
    • Organizer
      4th International Conference on Porphyrins and Phthalocyanines
    • Place of Presentation
      Rome, Italy
    • Year and Date
      20060702-07
    • Description
      「研究成果報告書概要(欧文)」より
  • [Presentation] Influence of a single amide group in the close proximity of heme on the redox function of Pseudomonas aeruginosa cytochrome c5512006

    • Author(s)
      Takahasi, Y.
    • Organizer
      4th International Conference on Porphyrins and Phthalocyanines
    • Place of Presentation
      Rome, Italy
    • Year and Date
      20060702-07
    • Description
      「研究成果報告書概要(欧文)」より

URL: 

Published: 2010-02-04  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi