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2019 Fiscal Year Annual Research Report

Theory and applications of motions of anisotropic interfacial networks

Research Project

Project/Area Number 18F18016
Research InstitutionKyoto University

Principal Investigator

SVADLENKA KAREL  京都大学, 理学研究科, 准教授 (60572188)

Co-Investigator(Kenkyū-buntansha) MOHAMMAD RHUDAINA  京都大学, 理学(系)研究科(研究院), 外国人特別研究員
Project Period (FY) 2018-07-25 – 2020-03-31
Keywordsinterface dynamics / interfacial network / MBO scheme / level set method / volume preservation / cellular patterns
Outline of Annual Research Achievements

Considering the gradient flow of anisotropic surface energy constrained by volume preservation, we developed a level set-based method for realizing anisotropic motion of an interface network. First, we considered a variational approach to a vector-type Merriman-Bence-Osher (MBO) thresholding scheme with penalization technique, which realized volume-preserving crystalline motion with a smoothing technique but required an ad hoc scheme to satisfy the correct junction angles. Motivated by cellular pattern formations in sensory epithelium, we considered anisotropic motions driven by cell-cell adhesion. Due to the complexity of tricellular junctions, we then developed an MBO-type convolution scheme with localized auction dynamics which realizes correct cell contact angles and features good compatibility with level set representation and a solid mathematical background including stability and convergence. Here, cell-cell junctions are implicitly represented using level sets and succeeding dynamics are numerically determined by thresholding. We addressed several aspects pertinent to cell biology, e.g., our localization step prevents cells from unnatural splitting during rearrangement. Our method successfully reproduced development of cellular patterns in sensory systems, including cell sorting, total engulfment, and cell internalization. These simulations were implemented using C programming language and Matlab software. Results have been submitted for publication, as well as, presented and well received in local and overseas conferences.

Research Progress Status

令和元年度が最終年度であるため、記入しない。

Strategy for Future Research Activity

令和元年度が最終年度であるため、記入しない。

  • Research Products

    (6 results)

All 2020 2019

All Presentation (6 results) (of which Int'l Joint Research: 5 results,  Invited: 4 results)

  • [Presentation] Modeling Cellular Dynamics in TissueMorphogenesis: A Level Set-based Approach2020

    • Author(s)
      Rhudaina MOHAMMAD
    • Organizer
      3rd International Workshop on Mathematical Biology, Philippines
    • Int'l Joint Research
  • [Presentation] On Mosaic Cellular Patterns of Sensory Epithelial Tissues: An Interface Evolution Problem2019

    • Author(s)
      Rhudaina MOHAMMAD
    • Organizer
      CAS Current Problems in Numerical Analysis, Prague, Czech Republic
    • Int'l Joint Research / Invited
  • [Presentation] On Preserving Enclosed Volumes of Evolving Interfaces with Cell Motion Applications2019

    • Author(s)
      Rhudaina MOHAMMAD
    • Organizer
      CARMA Geometric Evolution Problems and Related Topics, Newcastle, Australia
    • Int'l Joint Research
  • [Presentation] Numerical Simulation of Cellular Patterning in Sensory Epithelia2019

    • Author(s)
      Rhudaina MOHAMMAD
    • Organizer
      Kyoto Winter School “Quantifying Dynamics of Life”
    • Int'l Joint Research / Invited
  • [Presentation] Modeling cell-to-cell adhesion dynamics in multicellular organisms2019

    • Author(s)
      Rhudaina MOHAMMAD
    • Organizer
      A3 Workshop on Soft Matter 2019, 東北大学
    • Int'l Joint Research / Invited
  • [Presentation] Surface energy-driven interface dynamics with junctions and volume constraints2019

    • Author(s)
      Rhudaina MOHAMMAD
    • Organizer
      界面現象の数理・モデリング研究合宿,軽井沢
    • Invited

URL: 

Published: 2021-01-27  

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