• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to project page

2021 Fiscal Year Annual Research Report

心筋症関連ミトコンドリア・核内遺伝子の協奏的制御を可能にする人工転写因子の開発

Research Project

Project/Area Number 19H03349
Research InstitutionKyoto University

Principal Investigator

ナマシヴァヤム パンディアン  京都大学, 高等研究院, 講師 (20625446)

Co-Investigator(Kenkyū-buntansha) 杉山 弘  京都大学, 理学研究科, 教授 (50183843)
Project Period (FY) 2019-04-01 – 2022-03-31
Keywordsピロールイミダゾールポリアミド / エピジェネティクス / 人工転写因子 / ナノテクノロジー / 心筋症
Outline of Annual Research Achievements

In this fiscal year, we accomplished the milestones mentioned in the proposal and have further broadened the applicability of functional nanomaterials in uncharted domains of precision medicine. First, we have shown that our advanced biomimetic epigenetic codes could operate as smart transcription factors (SMART-TFs) and artificially regulate nuclear genes associated with mitochondrial biogenesis and cellular energy metabolism. This nucleus targeting SMART-TF synergized with PD-1 blockade to enhance antitumor immunity and improve host survival. We also developed nanoparticle-based selective mitochondria targeting Mito-SMART-TF with high colloidal stability, outstanding biocompatibility, efficient cell uptake, and amenability to be monitored in live cells using near-infrared fluorescence. Both the nuclear and mitochondrial SMART-TFs demonstrated the individual capacity of altering the redox status of the live cells by regulating the reactive oxygen species (ROS) production. Also, we harnessed our transcription therapeutic strategy to construct a multi-functional conjugate capable of sequence-specific adenine alkylation and published the demonstration of targeted elimination of mutated mitochondrial DNA in HeLa cells. Furthermore, we have developed 1) chemical probe-based nanopore direct RNA sequencing approach to accurately assess the RNA modifications and 2) enhanced the bioapplicability of self-enclosed microfluidic devices to be used for pore-sized separation of biomolecular mixtures. These results are published and/or to be published in high impact research journals.

Research Progress Status

令和3年度が最終年度であるため、記入しない。

Strategy for Future Research Activity

令和3年度が最終年度であるため、記入しない。

  • Research Products

    (29 results)

All 2022 2021 Other

All Int'l Joint Research (4 results) Journal Article (11 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 9 results,  Open Access: 5 results) Presentation (9 results) (of which Int'l Joint Research: 2 results,  Invited: 9 results) Remarks (5 results)

  • [Int'l Joint Research] Rutgers University(米国)

    • Country Name
      U.S.A.
    • Counterpart Institution
      Rutgers University
  • [Int'l Joint Research] Indian Institute of Technology- Roorkee(インド)

    • Country Name
      INDIA
    • Counterpart Institution
      Indian Institute of Technology- Roorkee
  • [Int'l Joint Research] AO Research Institute/University of Zurich(スイス)

    • Country Name
      SWITZERLAND
    • Counterpart Institution
      AO Research Institute/University of Zurich
  • [Int'l Joint Research] University of Cyberjaya(マレーシア)

    • Country Name
      MALAYSIA
    • Counterpart Institution
      University of Cyberjaya
  • [Journal Article] Classification of COVID-19 from chest x-ray images using deep features and correlation coefficient.2022

    • Author(s)
      R. Kumar, R. Arora, V. Bansal, V. J. Sahayasheela, H.Buckchash, J. Imran, N. Narayanan, Ganesh N Pandian*, B. Raman.
    • Journal Title

      Multimedia Tools and Applications

      Volume: 1 Pages: 1-25

    • DOI

      10.1007/s11042-022-12500-3.

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Targeted elimination of mutated mitochondrial DNA by a multi-functional conjugate capable of sequence-specific adenine alkylation2022

    • Author(s)
      Hidaka Takuya、Hashiya Kaori、Bando Toshikazu、Pandian Ganesh N.、Sugiyama Hiroshi
    • Journal Title

      Cell Chemical Biology

      Volume: 29 Pages: 690~695.e5

    • DOI

      10.1016/j.chembiol.2021.08.003

    • Peer Reviewed
  • [Journal Article] Targeted epigenetic induction of mitochondrial biogenesis enhances antitumor immunity in mouse model2022

    • Author(s)
      Malinee Madhu、Pandian Ganesh Namasivayam、Sugiyama Hiroshi
    • Journal Title

      Cell Chemical Biology

      Volume: 29 Pages: 463~475.e6

    • DOI

      10.1016/j.chembiol.2021.08.001

    • Peer Reviewed
  • [Journal Article] Inhibition of GLI-mediated transcription by cyclic pyrrole-imidazole polyamide in cancer stem cells.2022

    • Author(s)
      V.J. Sahayasheela, Z. Yu, Y. Hirose, Ganesh N. Pandian*, T. Bando and H. Sugiyama
    • Journal Title

      Bulletin of the Chemical Society of Japan

      Volume: - Pages: -

    • DOI

      10.1246/bcsj.20210453

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] An informatics approach to distinguish RNA modifications in nanopore direct RNA sequencing2022

    • Author(s)
      Ramasamy Soundhar、Mishra Shubham、Sharma Surbhi、Parimalam Sangamithirai Subramanian、Vaijayanthi Thangavel、Fujita Yoto、Kovi Basavaraj、Sugiyama Hiroshi、Pandian Ganesh N.
    • Journal Title

      Genomics

      Volume: - Pages: 110372~110372

    • DOI

      10.1016/j.ygeno.2022.110372.

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural colour enhanced microfluidics2022

    • Author(s)
      D. Qin, A.H. Gibbons, M.M. Ito, S.S. Parimalam, H. Jiang, H.e. Karahan, B. Ghalei, D. Yamaguchi, Ganesh N. Pandian, E. Sivaniah
    • Journal Title

      Nature Communications

      Volume: - Pages: -

    • DOI

      10.1038/s41467-022-29956-4

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] AI-based Diagnosis of COVID-19 Patients Using X-ray Scans with Stochastic Ensemble of CNNs2021

    • Author(s)
      R. Arora, V. Bansal, H.Buckchash, R. Kumar, V. J. Sahayasheela, N. Narayanan, Ganesh N Pandian, B. Raman
    • Journal Title

      Physical and Engineering Sciences in Medicine

      Volume: 44 Pages: 1257-1271

    • DOI

      10.1007/s13246-021-01060-9.

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Designing Biomimicking Synthetic Transcription Factors for Therapeutic Gene Modulation2021

    • Author(s)
      Pandian Ganesh N.、Sugiyama Hiroshi
    • Journal Title

      Designing Biomimicking Synthetic Transcription Factors for Therapeutic Gene Modulation

      Volume: x Pages: 135~161

    • DOI

      10.1007/978-3-030-55924-3_6

    • Peer Reviewed
  • [Journal Article] Sequence-Specific Control of Using Programmable Synthetic Gene Switches Called MITO-PIPs2021

    • Author(s)
      Hidaka Takuya、Sugiyama Hiroshi、Pandian Ganesh N.
    • Journal Title

      Methods in Molecular Biology

      Volume: 2275 Pages: 217~225

    • DOI

      10.1007/978-1-0716-1262-0_13

    • Peer Reviewed
  • [Journal Article] Chemical Probe-Based Nanopore Sequencing to Selectively Assess the RNA Modification2021

    • Author(s)
      ramasamy soundhar、Sahayasheela Vinodh J.、Yu Zutao、Hidaka Takuya、Cai Li、Sugiyama Hiroshi、Pandian Ganesh N.
    • Journal Title

      SSRN Electronic Journal

      Volume: - Pages: -

    • DOI

      10.2139/ssrn.3906935

    • Open Access / Int'l Joint Research
  • [Journal Article] Comparative analysis of mitochondrial genomes in different species reveals the evolution of G-quadruplexes2021

    • Author(s)
      Sugiyama Hiroshi、Sahayasheela Vinodh、Yu Zutao、Pandian Ganesh
    • Journal Title

      Research Square Preprint

      Volume: - Pages: -

    • DOI

      10.21203/rs.3.rs-1126357/v1

    • Open Access
  • [Presentation] Programmable synthetic gene switches for mitochondrial gene modulation2021

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      World Mitochondria Society Congress- Targeting Mitochondria 2021
    • Int'l Joint Research / Invited
  • [Presentation] Big data for Precision Medicine2021

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      UK-Japan Young Scientist Workshop
    • Int'l Joint Research / Invited
  • [Presentation] DNA-based genetic switches: Impact on our health2021

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      Department of Biotechnology-India - National DNA day
    • Invited
  • [Presentation] Smart biomaterials for precision medicine2021

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      SMART BIOMATERIALS: From Diagnostics to Therapeutics,
    • Invited
  • [Presentation] Genetic switches for precision medicine2021

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      Japan-Taiwan Symposium on Advanced Materials for Biotechnology and Precision Health and Medicine with AI
    • Invited
  • [Presentation] Programmable epigenetic codes for therapeutic gene modulation2021

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      China Medical University Hospital-Kyoto University iCeMS Joint Meeting
    • Invited
  • [Presentation] Mitochondrial Gene Switches2021

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      Indian Embassy Science and Technology Seminar - 2021
    • Invited
  • [Presentation] Precision medicine for future2021

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      Chennai Science Colloquium - 2021
    • Invited
  • [Presentation] Changing humanity: Physiological and psychological changes during Covid-192021

    • Author(s)
      NAMASIVAYAM Ganesh Pandian
    • Organizer
      International Webinar on Science during Pandemic- Meston College
    • Invited
  • [Remarks] PD-1阻害剤によるがん免疫治療法の効果を高めるミトコンドリア活性化剤

    • URL

      https://www.icems.kyoto-u.ac.jp/news/4468/

  • [Remarks] ミトコンドリアの変異DNAを減らす化合物の開発

    • URL

      https://www.icems.kyoto-u.ac.jp/news/4421/

  • [Remarks] Namasivayam Group Homepage

    • URL

      https://www.namasivayam.icems.kyoto-u.ac.jp/research

  • [Remarks] スマート遺伝子スイッチが切り開く高精度医療への道

    • URL

      https://www.icems.kyoto-u.ac.jp/people/frontrunners/6872/

  • [Remarks] iCeMS Principal Investigator Page

    • URL

      https://www.icems.kyoto-u.ac.jp/people/961/

URL: 

Published: 2022-12-28  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi