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2012 Fiscal Year Final Research Report

Integration of Statistics and Machine Learning for Combining Prediction, Knowledge Discovery and Inference.

Research Project

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Project/Area Number 20240028
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Statistical science
Research InstitutionThe Institute of Statistical Mathematics

Principal Investigator

EGUCHI Shinto  統計数理研究所, 数理・推論研究系, 教授 (10168776)

Co-Investigator(Kenkyū-buntansha) KURIKI Satoshi  統計数理研究所, 数理・推論研究系, 教授 (90195545)
FUJISAWA Hironori  統計数理研究所, 数理・推論研究系, 准教授 (00301177)
HENMI Masayuki  統計数理研究所, 数理・推論研究系, 准教授 (80465921)
MATSUURA Masaaki  (公財)がん研究会, ゲノムセンター情報解析部門, 部門長 (40173794)
MANO Shuhei  統計数理研究所, 数理・推論研究系, 准教授 (20372948)
KOMORI Osamu  統計数理研究所, 統計思考院, 特任助教 (60586379)
Co-Investigator(Renkei-kenkyūsha) TAKENOUCHI Takashi  はこだて未来大学, 複雑系情報学科, 准教授 (50403340)
KAWAKITA Masanori  九州大学, システム情報科学研究科, 助教 (90435496)
Project Period (FY) 2008 – 2012
Keywords分類 / パターン認識
Research Abstract

Statistical methods to achieve scientific results conducted from genomics and omics data have been exploited. In particular, for prediction of phenotypes (disease type, treatment effect, prognosis) we enhanced to implement several proposals by a fusion between statistics and machine learning. The boosting method by maximization of Area Under Curve is applied to gene expression data. LASSO clustering is proposed to select genes for detecting subtypes in breast cancer patients.

  • Research Products

    (45 results)

All 2013 2012 2011 2010 2009 2008 Other

All Journal Article (16 results) (of which Peer Reviewed: 16 results) Presentation (27 results) Book (1 results) Remarks (1 results)

  • [Journal Article] Density estimation with minimization of U-divergence2013

    • Author(s)
      K. Naito and S. Eguchi
    • Journal Title

      Machine Learning

      Volume: 90 Pages: 29-57

    • Peer Reviewed
  • [Journal Article] An extension of the Receiver Operating Characteristic curve and AUC-optimal classification2012

    • Author(s)
      T. Takenouchi, O. Komori and S. Eguchi
    • Journal Title

      Neural Computation

      Volume: 24, 10 Pages: 2789-2824

    • Peer Reviewed
  • [Journal Article] Boosting learning algorithm for pattern recognition and beyond2011

    • Author(s)
      O. Komori and S. Eguchi
    • Journal Title

      E94-D

      Volume: 10 Pages: 1863-1869

    • DOI

      DOI 10.1587/transinf.E94.D.1863

    • Peer Reviewed
  • [Journal Article] Projective power entropy and maximum Tsallis entropy distributions2011

    • Author(s)
      S. Eguchi, O. Komori and S. Kato
    • Journal Title

      Entropy

      Volume: 13 Pages: 1746-1764

    • DOI

      DOI 10.3390/e13101746

    • Peer Reviewed
  • [Journal Article] area under the ROC curve2010

    • Author(s)
      O. Komori and S. Eguchi
    • Journal Title

      BMC Bioinformatics

      Volume: 11:314 Pages: online

    • Peer Reviewed
  • [Journal Article] Entropy and divergence associated with power function and the statistical application2010

    • Author(s)
      S. Eguchi and S. Kato
    • Journal Title

      Entropy

      Volume: 12 Pages: 262-274

    • Peer Reviewed
  • [Journal Article] Likelihood for statistically equivalent models2010

    • Author(s)
      J. Copas and S. Eguchi
    • Journal Title

      J. Royal Statistical Society B

      Volume: 72 Pages: 193-217

    • Peer Reviewed
  • [Journal Article] Robust hierarchical clustering for gene expression data analysis2009

    • Author(s)
      N. H. Mollah, M. Pritchard, O. Komori and S. Eguchi
    • Journal Title

      Communications of SIWN

      Volume: 6 Pages: 118-122

    • Peer Reviewed
  • [Journal Article] 関連遺伝子セットの多重解の存在2009

    • Author(s)
      プリチャード真理, 江口真透
    • Journal Title

      日本統計学会誌

      Volume: シリーズJ 2号,38 Pages: 199-212

    • Peer Reviewed
  • [Journal Article] SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip2009

    • Author(s)
      H. Fujisawa, Y. Horiuchi, Y. Harushima, T. Takada, S. Eguchi
    • Journal Title

      BMC Bioinformatics

      Volume: 10:131

    • Peer Reviewed
  • [Journal Article] Robust kernel principal component analysis2009

    • Author(s)
      S-Y. Huang, Y-R. Yeh, and S. Eguchi
    • Journal Title

      Neural Computation

      Volume: 21 Pages: 3179-3213

    • Peer Reviewed
  • [Journal Article] Boosting Algorithm Against Mislabeling in Multiclass Problems2008

    • Author(s)
      T. Takenouchi
    • Journal Title

      Neural Computation

      Volume: 20 Pages: 1596-1630

    • Peer Reviewed
  • [Journal Article] Robust parameter estimation with a small bias against heavy contamination2008

    • Author(s)
      H. Fujisawa, S. Eguchi
    • Journal Title

      Journal of Multivariate Analysis

      Volume: 99 Pages: 2053-2081

    • Peer Reviewed
  • [Journal Article] Boosting method for local learning in statistical pattern recognition2008

    • Author(s)
      M. Kawakita, S. Eguchi
    • Journal Title

      Neural Computation

      Volume: 20 Pages: 2792-283

    • Peer Reviewed
  • [Journal Article] Asymptotical improvement of maximum likelihood estimators on Kullback-Leibler loss2008

    • Author(s)
      S. Eguchi
    • Journal Title

      Journal of Statistical Planning and Inference

      Volume: 138 Pages: 3502-3511

    • Peer Reviewed
  • [Journal Article] Robust Independent Component Analysis via Minimum γ-Divergence Estimation

    • Author(s)
      P. Chen, H. Hung, O. Komori, S-Y. Huang, and S. Eguchi
    • Journal Title

      To appear in IEEE

    • Peer Reviewed
  • [Presentation] 遺伝子発現による表現形の予測のための統計的方法2013

    • Author(s)
      江口真透
    • Organizer
      久留米大学バイオ統計センター10周年記念第11回久留米大学バイオ統計学フォーラム
    • Place of Presentation
      福岡県久留米市
    • Year and Date
      2013-01-19
  • [Presentation] Maximization of a generalized t statistic for linear discrimination in the two group classification problem2012

    • Author(s)
      S. Eguchi,
    • Organizer
      Centre for Research in Statistical Methodology
    • Place of Presentation
      University of Warwick
    • Year and Date
      20120100
  • [Presentation] Maximization of the generalized t-statistics for two-class discrimination problem2012

    • Author(s)
      O. Komori, S. Eguchi and J. Copas
    • Organizer
      Statistical Seminar
    • Place of Presentation
      Academia Sinica, Taipei, Taiwan
    • Year and Date
      2012-10-15
  • [Presentation] t統計量の一般化とその判別解析への応用2012

    • Author(s)
      小森 理,江口真透,コーパス ジョン
    • Organizer
      統計関連学会連合大会
    • Place of Presentation
      札幌,北海道
    • Year and Date
      2012-09-10
  • [Presentation] Maximization of a Generalized t-Statistic for Two-Class Discrimination Problem2012

    • Author(s)
      O. Komori, S. Eguchi and J. Copas
    • Organizer
      XXVI th International Biometric Conference
    • Place of Presentation
      Kobe, Japan
    • Year and Date
      2012-08-28
  • [Presentation] Projective power cross entropy and detectability for hidden structures: part II, International Workshop on Anomalous Statistics2012

    • Author(s)
      S. Eguchi, A. Notsu and O. Komori
    • Organizer
      Generalized Entropies, and Information Geometry
    • Place of Presentation
      奈良女子大学
    • Year and Date
      2012-03-09
  • [Presentation] Projective power entropy and detectability for hidden structures, Workshop on Contemporary Statistics2011

    • Author(s)
      S. Eguchi
    • Organizer
      Taida Institute for Mathematical Sciences
    • Place of Presentation
      National Taiwan University
    • Year and Date
      2011-12-20
  • [Presentation] Projective power entropy based learning for unsupervised data2011

    • Author(s)
      S. Eguchi, O. Komori, A. Notsu
    • Organizer
      Joint Meeting of 2011 Taipei International Statistical Symposium
    • Place of Presentation
      Academia Sinica, Taiwan
    • Year and Date
      2011-12-17
  • [Presentation] A Statistical Method for the Partial Area under the ROC Curve2010

    • Author(s)
      O. Komori, S. Eguchi
    • Organizer
      25th International Biometric Conference
    • Place of Presentation
      Florianopolis, Brazil
    • Year and Date
      2010-12-07
  • [Presentation] U-entropy and maximum entropy model2010

    • Author(s)
      S. Eguchi
    • Organizer
      Information Geometry and its Applications III
    • Place of Presentation
      Leipzig, Germany
    • Year and Date
      2010-08-02
  • [Presentation] Boosting finite mixture model2010

    • Author(s)
      S. Eguchi
    • Organizer
      International Conference on Robust Statistics 2010
    • Place of Presentation
      Prague, Czech Republic
    • Year and Date
      2010-06-29
  • [Presentation] Pattern recognition from genome and omics data2010

    • Author(s)
      O. Komori and S. Eguchi
    • Organizer
      Tutorial Workshop on Learning with Information Divergence Geometry
    • Place of Presentation
      National Taiwan University, Taipei, Taiwan
    • Year and Date
      2010-04-25
  • [Presentation] Boosting leaning algorithm and U-loss functions I and II2010

    • Author(s)
      S. Eguchi and O. Komori
    • Organizer
      Tutorial Workshop on Learning with Information Divergence Geometry
    • Place of Presentation
      National Taiwan University, Taipei, Taiwan
    • Year and Date
      2010-04-25
  • [Presentation] Information geometry on model uncertainty2010

    • Author(s)
      S. Eguchi and O. Komori
    • Organizer
      Tutorial Workshop on Learning with Information Divergence Geometry
    • Place of Presentation
      National Taiwan University, Taipei, Taiwan
    • Year and Date
      2010-04-24
  • [Presentation] nformation divergence class and robust statistical methods I,II2010

    • Author(s)
      S. Eguchi and O. Komori
    • Organizer
      Tutorial Workshop on Learning with Information Divergence Geometry
    • Place of Presentation
      National Taiwan University, Taipei, Taiwan
    • Year and Date
      2010-04-24
  • [Presentation] Maximizing t-values for all functions of a feature vector2009

    • Author(s)
      S. Eguchi
    • Organizer
      Workshop on Geometric and Algebraic Statistics
    • Place of Presentation
      Milton Keynes, U.K
    • Year and Date
      2009-07-13
  • [Presentation] Projective Tsallis Entropy and its Application to Robust Statistics2009

    • Author(s)
      S. Eguchi
    • Organizer
      Mathematical Aspects of Generalized Entropies and their Applications
    • Place of Presentation
      Kyoto, Japan
    • Year and Date
      2009-07-08
  • [Presentation] Boosting true positive and false positive rates for pattern recognition2009

    • Author(s)
      S. Eguchi
    • Organizer
      Institute of Mathematical Statistics Asia Pacific Rim 1st Meeting
    • Place of Presentation
      Seoul, South Korea
    • Year and Date
      2009-06-29
  • [Presentation] Information divergence geometry and its application to machine learning2009

    • Author(s)
      S. Eguchi,
    • Organizer
      The Fifth Statistics and Machine Learning Workshop
    • Place of Presentation
      Tainan, Taiwan
    • Year and Date
      2009-04-28
  • [Presentation] タンパク質構造と進化と情報幾何2009

    • Author(s)
      江口 真透
    • Organizer
      数理研短期共同研究集会「離散力学系の分子細胞生物学への応用数理
    • Place of Presentation
      京都
    • Year and Date
      2009-01-08
  • [Presentation] A Boosting Method for Maximizing the Partial Area under the ROC Curve2008

    • Author(s)
      O. Komori
    • Organizer
      International Association for Statistical Computing 2008
    • Place of Presentation
      Yokohama, Japan
    • Year and Date
      2008-12-07
  • [Presentation] On the bound of statistical inference for observational data2008

    • Author(s)
      S. Eguchi
    • Organizer
      International Association for Statistical Computing 2008
    • Place of Presentation
      Yokohama, Japan
    • Year and Date
      2008-12-06
  • [Presentation] バイオインフォマティクスにおける統計的課題について2008

    • Author(s)
      江口 真透
    • Organizer
      科研費研究集会「高次元データの統計解析」
    • Place of Presentation
      博多,福岡
    • Year and Date
      2008-11-21
  • [Presentation] 累積分布関数のエントロピーと順序ラベルの判別への応用2008

    • Author(s)
      江口 真透
    • Organizer
      統計関連学会連合大会
    • Place of Presentation
      横浜,神奈川
    • Year and Date
      2008-09-09
  • [Presentation] モデル不確定性と不完全観測バイアス2008

    • Author(s)
      江口 真透
    • Organizer
      統計関連学会連合大会
    • Place of Presentation
      横浜,神奈川
    • Year and Date
      2008-09-09
  • [Presentation] 1クラスラベルに注目したブースティング2008

    • Author(s)
      小森 理
    • Organizer
      統計関連学会連合大会
    • Place of Presentation
      横浜,神奈川
    • Year and Date
      2008-09-08
  • [Presentation] Information divergence geometry and its application to machine learning2008

    • Author(s)
      S. Eguchi
    • Organizer
      The 1st MSJ-SI, Probabilistic Approach to Geometry
    • Place of Presentation
      Kyoto, Japan
    • Year and Date
      2008-08-04
  • [Book] Frank Emmert-Streib Information Theory and Statistical Learning2008

    • Author(s)
      S. Eguchi
    • Publisher
      Springer
  • [Remarks]

    • URL

      http://www.ism.ac.jp/~eguchi/

URL: 

Published: 2014-08-29  

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