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2010 Fiscal Year Final Research Report

Circadian adaptation dynamics of cyanobacterial genome

Research Project

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Project/Area Number 20370072
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionWaseda University

Principal Investigator

IWASAKI Hideo  Waseda University, 理工学術院, 准教授 (00324393)

Project Period (FY) 2008 – 2010
Keywordsシアノバクテリア / 概日リズム / 明暗応答 / 環境適応 / Synechococcus
Research Abstract

Based on microarray analysis combined with molecular genetics, we revealed that more than one third of genes on the genome exhibit significant circadian transcription rhythms with peaking at either subjective dawn or dusk under continuous light conditions. When cells were transferred to the dark, most of gene expression was dramatically suppressed and gave rise to serious discrepancy between transcriptomic and proteomic profiles. Moreover, we found less than 8% of genes on the genome were induced even in the dark, and most of them were under the control of the Kai proteins. Since the kai gene mRNAs were rapidly lost in the dark, our observation revealed the first example of clock-controlled transcription without de novo clock gene expression.

  • Research Products

    (19 results)

All 2010 2009 2008 Other

All Journal Article (5 results) (of which Peer Reviewed: 4 results) Presentation (11 results) Book (2 results) Remarks (1 results)

  • [Journal Article] Cyanobacterial cell lineage analysis of the spatiotemporal hetR expression profile during heterocyst pattern formation in Anabaena sp. PCC 71202009

    • Author(s)
      H.Asai, S.Iwamori, K.Kawai, S.Ehira, J.Ishihara, K.Aihara, S.Shoji, H.Iwasaki
    • Journal Title

      PLoS ONE 4(10)

      Pages: e7371

    • Peer Reviewed
  • [Journal Article] Cyanobacterial daily life with Kai-based circadian and diurnal genome-wide transcriptional control in Synechococcus elongatus2009

    • Author(s)
      H.Ito, M.Mutsuda, Y.Murayama, J.Tomita, N.Hosokawa, K.Terauchi, C.Sugita, M.Sugita, T.Kondo, H.Iwasaki
    • Journal Title

      Proc.Natl.Acad.Sci.USA 106

      Pages: 14168-14173

    • Peer Reviewed
  • [Journal Article] クテリアの生物時計-システム解析と構成的アプローチ2009

    • Author(s)
      岩崎秀雄
    • Journal Title

      化学と生物 7月号

  • [Journal Article] An attempt to reveal a role of a transcription/translation feedback loop in the cyanobacterial KaiC protein-based circadian system by using a semi-synthetic method2008

    • Author(s)
      H.Tozaki, T.Kobe, K.Aihara, H.Iwasaki
    • Journal Title

      Int.J.Bioinform.Res.Appl. 4

      Pages: 435-444

    • Peer Reviewed
  • [Journal Article] Proteins found in a CikA-interaction assay link the circadian clock, metabolism, and cell division in Synechococcus elongatus2008

    • Author(s)
      S.R.Mackey, JS.Cho, Y.Kitayama, H.Iwasaki, G.Dong, S.S.Golden
    • Journal Title

      J.Bacteriol. 190

      Pages: 3738-3746

    • Peer Reviewed
  • [Presentation] From cyanobacteria to synthetic cells : their time, shape and art2010

    • Author(s)
      岩崎秀雄
    • Organizer
      SymbioticA Symposium "Unruly Ecology : Biodiversity and Art"
    • Place of Presentation
      西オーストラリア大学,パース
    • Year and Date
      20100000
  • [Presentation] Expression of life in contemporary biomedia art : an alternative 'synthetic' approach2010

    • Author(s)
      岩崎秀雄
    • Organizer
      UK-Japan Synthetic Biology Workshop
    • Place of Presentation
      イギリス大使館
    • Year and Date
      20100000
  • [Presentation] Photoperiodic gene expression in cyanobacteria : circadian gene expression in the dark without transcriptional feedback of kai genes2009

    • Author(s)
      岩崎秀雄
    • Organizer
      日本生化学会
    • Place of Presentation
      シンポジウム(神戸)
    • Year and Date
      2009-10-22
  • [Presentation] シアノバクテリアの概日転写リズムに関する新知見2009

    • Author(s)
      岩崎秀雄
    • Organizer
      ラン藻ゲノム研究会
    • Year and Date
      2009-07-04
  • [Presentation] 体内時計から細胞創成へ?:構成生物学の社会・文化的含意について2009

    • Author(s)
      岩崎秀雄
    • Organizer
      日本時間学会創立シンポジウム
    • Place of Presentation
      山口大学
    • Year and Date
      2009-06-13
  • [Presentation] バイオリズム・ブームとは何だったのか:生命リズムの科学・文化誌2009

    • Author(s)
      岩崎秀雄
    • Organizer
      科学言説研究会
    • Place of Presentation
      工学院大学
    • Year and Date
      2009-02-14
  • [Presentation] 生命リズムのメタファーとイメジャリー2009

    • Author(s)
      岩崎秀雄
    • Organizer
      リズム現象の研究会IV
    • Place of Presentation
      お茶の水女子大学
    • Year and Date
      2009-01-23
  • [Presentation] Spatio-temporal pattern formations in cyanobacteria2008

    • Author(s)
      岩崎秀雄
    • Organizer
      上原記念生命科学財団シンポジウム
    • Place of Presentation
      東京
    • Year and Date
      20080630-20080702
  • [Presentation] Systems Analyses on Cyanobacterial Spatio-Temporal Pattern Formations and Responses to Light-Dark Cycles2008

    • Author(s)
      岩崎秀雄
    • Organizer
      AESF-EMBO Symposium
    • Place of Presentation
      (スペイン)招待講演を行った
    • Year and Date
      20080000
  • [Presentation] Systems and synthetic analysis toward understanding spatio-temporal pattern formations in cyanobacteria2008

    • Author(s)
      岩崎秀雄
    • Organizer
      Japan-France Plant Science Workshop
    • Place of Presentation
      Tsukuba
    • Year and Date
      2008-10-22
  • [Presentation] 環境適応に関わる周期的時空間パターンダイナミクス:シアノバクテリアを用いて2008

    • Author(s)
      岩崎秀雄
    • Organizer
      川村浩先生本間アショフ賞受賞記念シンポジウム
    • Place of Presentation
      三菱生命科学研究所
    • Year and Date
      2008-04-18
  • [Book] Systems Biology : The Challenge of Complexity (Eds. Nakanishi S., Kageyama R.,Watanabe D)(A posttranslational chemical circadian oscillator in cyanobacteria)2009

    • Author(s)
      Iwasaki H
    • Publisher
      Springer
  • [Book] Bacterial Circadian Programs (Eds. J. Ditty, S. Mackey, C.H. Johnson)(Factors involved in transcriptional output from the Kai-protein-based circadian oscillator)2009

    • Author(s)
      Iwasaki H
    • Publisher
      Springer
  • [Remarks] ホームページ等

    • URL

      www.f.waseda.jp/hideo-iwasaki/

URL: 

Published: 2012-01-26   Modified: 2016-04-21  

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