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2010 Fiscal Year Final Research Report

Elucidation of the mechanism controlling the formation of photosystem II complex by means of structural analysis of various mutants

Research Project

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Project/Area Number 20570038
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Plant molecular biology/Plant physiology
Research InstitutionOkayama University

Principal Investigator

SIN Kenjin  Okayama University, 大学院・自然科学研究科, 教授 (60261161)

Research Collaborator KAMIYA Nobuo  大阪市立大学, 大学院・理学研究科, 教授 (60152865)
UMENA Yasufumi  大阪市立大学, 大学院・理学研究科, 博士研究員
KAWAKAMI Keisuke  岡山大学, 大学院・自然科学研究科, 大学院生
TAKASAKA Kenji  岡山大学, 大学院・自然科学研究科, 大学院生
IWAI Masako (小黒 雅子)  東京理科大学, 理工学部, 助教 (90385526)
IKEUCHI Masahiko  東京大学, 大学院・総合文化研究科, 教授 (20159601)
Project Period (FY) 2008 – 2010
Keywords光合成 / 光化学系II / 酸素発生 / 電子伝達 / 膜タンパク質 / 結晶化 / 構造解析 / 変異体
Research Abstract

In order to elucidate the mechanism controlling the formation of the photosystem II complex, studies on the structures and functions of various low molecular weight subunit-deletion mutants of PSII were carried out. The crystal structure of Ycf12 (Psb30)-deletion mutant confirmed the location of Ycf12, and PSII isolated from a PsbZ-deletion mutant lacked both Ycf12 and PsbK, suggesting the requirement of PsbZ for the stable binding of these two subunits to PSII. In addition, PsbM was shown to be required for maintaining the stability of PSII dimer, while PsbI was required for the formation of PSII dimer but not required for the stability of the dimer.

  • Research Products

    (45 results)

All 2011 2010 2009 2008 Other

All Journal Article (16 results) Presentation (20 results) Book (8 results) Remarks (1 results)

  • [Journal Article] Structure of the catalytic, inorganic core of oxygen-evolving photosystem II at 1.9 A resolution.2011

    • Author(s)
      Kawakami K., Umena Y., Kamiya N., ShenJ.-R.
    • Journal Title

      J.Photochem.Photobiol.B 104

      Pages: 9-18

  • [Journal Article] Crystal structure of oxygen-evolving photosystem II at 1.9 A resolution.2011

    • Author(s)
      Umena Y., Kawakami K., Shen J.-R., Kamiya N.
    • Journal Title

      Nature 473

      Pages: 55-60

  • [Journal Article] Labile electronic and spin states of the CaMn_4O_5 cluster in the PSII system refined to the 1.9 A X-ray resolution. UB3LYP computational results.2011

    • Author(s)
      Kanda K., Yamanaka S., Saito T., Umena Y., Kawakami K., Shen J.-R., Kamiya N., Okumura M., Nakamura H., Yamaguchi K.
    • Journal Title

      Chem.Phys.Lett. 506

      Pages: 98-103

  • [Journal Article] Roles of PsbI and PsbM in photosystem II dimer formation and stability studied by deletion mutagenesis and X-ray crystallography.2011

    • Author(s)
      Kawakami K., Umena Y., Iwai M., Kawabata Y., Ikeuchi M., Kamiya N., Shen J.-R.
    • Journal Title

      Biochim.Biophys.Acta 1807

      Pages: 319-325

  • [Journal Article] Proton-Coupled Electron-Transfer Processes in Photosystem II Probed by Highly Resolved g-Anisotropy of Redox-Active Tyrosine Y(Z).2011

    • Author(s)
      Matsuoka H., Shen J.-R., Kawamori A., Nishiyama K., Ohba Y., Yamauchi S.
    • Journal Title

      J.Am.Chem.Soc. 133

      Pages: 4655-4660

  • [Journal Article] Photosynthetic oxygen evolution in mesoporous silica material : Adsorption of photosystem II reaction center complex into 23-nm nanopores in SBA.2011

    • Author(s)
      Noji T., Kamidaki C., Kawakami K., Shen J.-R., Kajino T., Fukushima Y., Sekitoh T., Itoh S.
    • Journal Title

      Langmuir 27

      Pages: 705-713

  • [Journal Article] Structural and functional studies on Ycf12 (Psb30) and PsbZ deletion mutants from a thermophilic cyanobacterium.2010

    • Author(s)
      Takasaka K., Iwai M., Umena Y., Kawakami K., Ohmori Y., Ikeuchi M., Takahashi Y., Kamiya N., Shen J.-R.
    • Journal Title

      Biochim.Biophys.Acta 1797

      Pages: 278-284

  • [Journal Article] Binding and functional properties of five extrinsic proteins in oxygen-evolving Photosystem II from a marine centric diatom, Chaetoceros gracilis.2010

    • Author(s)
      Nagao R., Moriguchi A., Tomo T., Niikura A., Nakajima S., Suzuki T., Okumura A., Iwai M., Shen J.-R., Ikeuchi M., Enam I.
    • Journal Title

      J.Biol.Chem. 285

      Pages: 29191-29199

  • [Journal Article] Topological analysis of the extrinsic PsbO, PsbP and PsbQ proteins in a green algal PSII complex by cross-linking with a water-soluble carbodiimide.2010

    • Author(s)
      Nagao R., Suzuki T., Okumura A., Niikura A., Iwai M., Dohmae N., Tomo T., Shen J.-R., Ikeuchi M., Enami I.
    • Journal Title

      Plant Cell Physiol. 51

      Pages: 718-727

  • [Journal Article] Location of chloride and its possible functions in oxygen-evolving photosystem II revealed by X-ray crystallography.2009

    • Author(s)
      Kawakami K., Umena Y., Kamiya N., Shen J.-R.
    • Journal Title

      Proc.Natl.Acad.Sci.USA 106

      Pages: 8567-8572

  • [Journal Article] Towards structural elucidation of eukaryotic photosystem II : Purification, crystallization and preliminary X-ray diffraction analysis of photosystem II from a red alga.2009

    • Author(s)
      Adachi H., Umena Y., Enami I., Henmi T., Kamiya N., Shen J.-R.
    • Journal Title

      Biochim.Biophys.Acta 1787

      Pages: 121-128

  • [Journal Article] Probing tyrosine Z oxidation in photosystem II core complex isolated from spinach by EPR at liquid helium temperatures.2009

    • Author(s)
      Ren Y., Zhang C., Bao H., Shen J.-R., Zhao J.
    • Journal Title

      Photosynthesis Research 99

      Pages: 127-138

  • [Journal Article] Effects of phospholipase and lipase treatments on photosystem II core dimer from a thermophilic cyanobacterium.2008

    • Author(s)
      Leng J., Sakurai I., Wada H., Shen J.-R.
    • Journal Title

      Photosynthesis Research 98

      Pages: 469-478

  • [Journal Article] X-ray crystallographic and biochemical characteri-zations of a mutant Photosystem II complex from Thermosynechococcus vulcanus with the psbTc gene inactivated by an insertion mutation.2008

    • Author(s)
      Henmi T., Iwai M., Ikeuchi M., Kawakami K., Shen J.-R., Kamiya N.
    • Journal Title

      J.Synchrotron Rad. 15

      Pages: 304-307

  • [Journal Article] Acceptor side effects on the electron transfer at cryogenic temperatures in intact photosystem II.2008

    • Author(s)
      Bao H., Zhang C., Kawakami K., Ren Y., Shen J.-R., Zhao J.
    • Journal Title

      Biochim.Biophys.Acta 1777

      Pages: 1109-1115

  • [Journal Article] Structures and functions of the extrinsic proteins of photosystem II from different species.2008

    • Author(s)
      Enami I., Okumura A., Nagao R., Iwai I., Suzuki T., Shen J.-R.
    • Journal Title

      Photosynthesis Research 98

      Pages: 349-363

  • [Presentation] 光合成酸素発生を可能にするMnクラスターの原子構造2011

    • Author(s)
      沈建仁
    • Organizer
      理研シンポジウム「生物を律する揺らぎのメカニズムを追い求めて-光合成と生体信号-」
    • Year and Date
      20110419-20110420
  • [Presentation] Atomic structure of photosystem II that enables photosynthetic water-splitting2011

    • Author(s)
      沈建仁
    • Organizer
      The Annual Review Conference of the Global COE program of University of Hyogo, "Picobiology : Life Science at the Atomic Level" for the fiscal year of 2010
    • Place of Presentation
      Hyogo.
    • Year and Date
      20110328-20110330
  • [Presentation] 1.9 A 分解能の光化学系II 構造から見た光合成酸素発生の分子基盤2011

    • Author(s)
      沈建仁・梅名泰史・川上恵典・神谷信夫
    • Organizer
      第52回日本植物生理学会年会
    • Place of Presentation
      仙台
    • Year and Date
      20110320-20110322
  • [Presentation] Crystal structure of oxygen-evolving photosystem II at 1.9 A resolution2011

    • Author(s)
      沈建仁
    • Organizer
      Umea Renewable Energy Meeting 2011
    • Place of Presentation
      Umea, Sweden.
    • Year and Date
      20110317-20110318
  • [Presentation] Crystal structure of oxygen evolving photosystem II at an atomic resolution2011

    • Author(s)
      沈建仁., 梅名泰史., 川上恵典., 神谷信夫
    • Organizer
      JAPANESE-FINNISH Information-exchange Seminar 2011 "Future prospects of photosynthetic organisms : from genomes to environment"
    • Place of Presentation
      Okayama.
    • Year and Date
      20110301-20110305
  • [Presentation] Crystal structure of oxygen evolving photosystem II at an atomic resolution2010

    • Author(s)
      沈建仁., 梅名泰史., 川上恵典., 神谷信夫
    • Organizer
      The 70th Okazaki International Conference on Molecular mechanism of photosynthetic energy conversion : the present research and future prospects
    • Place of Presentation
      Okazaki, Japan.
    • Year and Date
      20101204-20101206
  • [Presentation] Crystal structure of oxygen evolving Photosystem II at an atomic resolution2010

    • Author(s)
      沈建仁., 梅名泰史., 川上恵典., 神谷信夫
    • Organizer
      15^<th>International Congress Of Photosynthesis (PS2010)
    • Place of Presentation
      Beijing, China.
    • Year and Date
      20100822-20100828
  • [Presentation] Charactarization of photosystem II from extrinsic protein-deleted mutants of a thermophilic cyanobacterium2010

    • Author(s)
      Ohmori Y., Iwai M., Ikeuchi M., Shen J.-R
    • Organizer
      15^<th> International Congress Of Photosynthesis (PS2010)
    • Place of Presentation
      Beijing, China
    • Year and Date
      20100822-20100828
  • [Presentation] Mechanism of photosynthetic water-splitting based on the structural analysis of photosystem II2010

    • Author(s)
      沈建仁
    • Organizer
      Inaugural Conference on Molecular & Functional Catalysis (ICMFC-1)
    • Place of Presentation
      Singapore.
    • Year and Date
      20100711-20100715
  • [Presentation] Structural and functional studies on native and various mutant photosystem II complexes2010

    • Author(s)
      沈建仁
    • Organizer
      GCOE Program : Picobiology : Life Sciences at the Atomic Level ; Annual Review Conference for the Fiscal Year of 2009
    • Place of Presentation
      Harima.
    • Year and Date
      20100328-20100330
  • [Presentation] Mechanism of photosynthetic solar energy-conversion and water-splitting in biological systems2010

    • Author(s)
      沈建仁
    • Organizer
      4th International Symposium on Commemoration of Exchange Agreement between National Taiwan University and Okayama University
    • Place of Presentation
      Okayama.
    • Year and Date
      2010-09-09
  • [Presentation] 光化学系II複合体の酸素発生反応に関わるClの結合部位の同定2009

    • Author(s)
      川上恵典、梅名康文、神谷信夫、沈建仁
    • Organizer
      第15回日本光生物学協会年会
    • Place of Presentation
      岡崎
    • Year and Date
      20090819-20090820
  • [Presentation] Ycf12、PsbZ欠失変異体由来光化学系IIのX線結晶構造解析2009

    • Author(s)
      高坂賢之、岩井雅子、梅名泰史、神谷信夫、川上恵典、沈建仁
    • Organizer
      第50回日本植物生理学会年会
    • Place of Presentation
      名古屋
    • Year and Date
      20090321-20090324
  • [Presentation] 光化学系II二量体の形成・安定化におけるPsbM,PsbIサブユニットの役割2009

    • Author(s)
      川上恵典, 岩井雅子, 川端洋輔, 逸見隆博, 池内昌彦, 神谷信夫, 沈建仁
    • Organizer
      第50回日本植物生理学会年会
    • Place of Presentation
      名古屋
    • Year and Date
      20090321-20090324
  • [Presentation] Structure and function of oxygen-evolving photosystem II2009

    • Author(s)
      沈建仁
    • Organizer
      Pre-RCE Workshop on Catalysis for Efficient and Sustainable Energy
    • Place of Presentation
      Singapore.
    • Year and Date
      2009-05-28
  • [Presentation] PsbM,PsbI欠失変異株における光化学系II複合体の構造・機能解析2008

    • Author(s)
      川上恵典, 川端洋輔, 逸見隆博, 岩井雅子, 池内昌彦, 神谷信夫, 沈建仁
    • Organizer
      特定領域研究「生体超分子の構造形成と機能制御の原子機構」第5回公開シンポジウム
    • Place of Presentation
      つくば
    • Year and Date
      20081218-20081219
  • [Presentation] 変異株を用いた光化学系II 低分子量サブユニットYcf12の位置決定2008

    • Author(s)
      高坂賢之、岩井雅子、川上恵典、沈建仁、梅名泰史、神谷信夫
    • Organizer
      特定領域研究「生体超分子の構造形成と機能制御の原子機構」第5回公開シンポジウム
    • Place of Presentation
      つくば
    • Year and Date
      20081218-20081219
  • [Presentation] 立体構造から探る光化学系II酸素発生反応の機構2008

    • Author(s)
      沈建仁
    • Organizer
      日本生物物理学会2008年度年会
    • Place of Presentation
      博多
    • Year and Date
      20081203-20081205
  • [Presentation] Roles of chloride and small subunits in PSII function and assembly studied by X-ray crystal structural analysis2008

    • Author(s)
      沈建仁
    • Organizer
      Japan-Finland Seminar : Genomics and Molecular Mechanisms of Regulation in Photosynthetic Organisms
    • Place of Presentation
      Helsinki.
    • Year and Date
      20081028-20081101
  • [Presentation] 膜タンパク質を見る2008

    • Author(s)
      沈建仁
    • Organizer
      日本植物学会第72回大会
    • Place of Presentation
      高知
    • Year and Date
      20080924-20080927
  • [Book] Purification and crystallization of oxygen-evolving photosystem II core complex from thermophilic cyanobacteria.(In Methods in Molecular Biology : Photosynthesis Protocols)(Edited by R. Carpentier)2010

    • Author(s)
      Shen J.-R., Kawakami K., Koike H.
    • Total Pages
      41-51
    • Publisher
      Springer NewYork Dordrecht Heidelberg London
  • [Book] Isolation of photosystem II-enriched membranes and the oxygen-evolving complex (OEC) subunit proteins from higher plants.(Methods in Molecular Biology : Photosynthesis Protocols, Humana Press)(In R.Carpentier (ed.))2010

    • Author(s)
      Yamamoto Y., Leng J., Shen J.-R.
    • Total Pages
      1-10
    • Publisher
      Springer NewYork Dordrecht Heidelberg London
  • [Book] Mechanisms of acido-tolerance and characteris-tics of photosynthesis in an acido- and thermophilic aed alga, Cyanidium caldarium.(In Red Algae in The Genomics Age)(Edited by J.Seckbach and D.J.Chapman)2010

    • Author(s)
      Enami I., Adachi H., 沈建仁
    • Total Pages
      373-389
    • Publisher
      Springer, Dordrecht.
  • [Book] (2010)Location and function of chloride ions in oxygen-evolving photosystem II revealed by X-Ray crystallography2009

    • Author(s)
      沈建仁
    • Total Pages
      22-23
    • Publisher
      SPring-8 Research Frontiers
  • [Book] 「光化学系IIの例から見る膜タンパク質複合体の結晶化と構造解析」光合成研究2009

    • Author(s)
      沈建仁、川上恵典
    • Total Pages
      19-25
  • [Book] 「系II複合体の精製法」低温科学2009

    • Author(s)
      沈建仁・榎並勲
    • Total Pages
      275-283
  • [Book] 「電子伝達活性」低温科学2009

    • Author(s)
      沈建仁
    • Total Pages
      551-560
  • [Book] Structure and Function of Photosystem II.(In Photosynthetic Protein Complexes, A Structural Approach)(Edited by F.Fromme)2008

    • Author(s)
      Shen J.-R., Henmi T., Kamiya N.
    • Total Pages
      83-106
    • Publisher
      WILEY-VCH, Germany.
  • [Remarks] 2011年4月18日日本経済新聞朝刊、産経新聞朝刊、日刊工業新聞、山陽新聞朝刊、中国新聞、朝日新聞夕刊等各紙や時事通信、共同通信がPSII の原子レベルの構造解明という研究成果について報道した。

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Published: 2012-01-26   Modified: 2016-04-21  

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