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2010 Fiscal Year Final Research Report

The next generation structural biology using a new pulsed-neutron diffractometer

Research Project

  • PDF
Project/Area Number 20612002
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Quantum beam science
Research InstitutionIbaraki University

Principal Investigator

TANAKA Ichiro  Ibaraki University, 工学部, 准教授 (20354889)

Co-Investigator(Kenkyū-buntansha) TOMOYORI Katsuaki  茨城大学, フロンティア応用原子科学研究センター, 産学官連携研究員 (10455909)
YAMADA Taro  茨城大学, フロンティア応用原子科学研究センター, 助教 (40455910)
KUSAKA Katsuhiro  茨城大学, フロンティア応用原子科学研究センター, 准教授 (10414591)
OHNISHI Yuuki  茨城大学, 工学部, 産学官連携研究員 (50455911)
Co-Investigator(Renkei-kenkyūsha) NIIMURA Nobuo  茨城大学, フロンティア応用原子科学研究センター, 特任教授 (50004453)
Project Period (FY) 2008 – 2010
KeywordsJ-PARC / 生体高分子用中性子回折計(iBIX) / 中性子結晶解析 / 水素 / 水素結合 / タンパク質 / 水和水
Research Abstract

A new diffractometer for protein crystallography (iBIX) at the next generation pulsed-neutron source at J-PARC, has been completed and operational since the end of 2008. After various commissionings, data collection of ribonuclease A could be done at the accelerator power of 120kW for a crystal of 5 mm3 in volume for about 10 days as the first protein sample at iBIX. As a result of structural analysis, hydrogen position and orientation of waters for a purpose could be confirmed. According to the result, it turned out that it is possible to collect a full data set of a protein in about 3 days for a crystal of 1 mm3 in volume when J-PARC accelerator power becomes 1MW and 30 detectors of iBIX are provided as a total as scheduled.

  • Research Products

    (29 results)

All 2011 2010 2009 2008 Other

All Journal Article (13 results) (of which Peer Reviewed: 13 results) Presentation (12 results) Remarks (4 results)

  • [Journal Article] X-ray and neutron protein crystallographic analysis of the trypsin-BPTI complex2011

    • Author(s)
      K.Kawamura, I.Tanaka, 他
    • Journal Title

      Acta Cryst D vol.67

      Pages: 140-148

    • Peer Reviewed
  • [Journal Article] 茨城県生命物質構造解析装置(iBIX)による水素・水和水の構造研究/産業利用2011

    • Author(s)
      田中伊知朗, 他
    • Journal Title

      RADIOISOTOPES 60巻

      Pages: 89-97

    • Peer Reviewed
  • [Journal Article] 供用を開始したJ-PARCの新しい生物用中性子回折装置(iBIX)2010

    • Author(s)
      田中伊知朗, 他
    • Journal Title

      薬学雑誌 130巻

      Pages: 665-670

    • Peer Reviewed
  • [Journal Article] Neutron Structure Analysis by IBARAKI Biological Crystal Diffractometer (iBIX) in J-PARC2010

    • Author(s)
      田中伊知朗, 他
    • Journal Title

      Acta Cryst D vol.66

      Pages: 1194-1197

    • Peer Reviewed
  • [Journal Article] BLO3茨城県生命物質構造解析装置(iBIX)2010

    • Author(s)
      田中伊知朗、日下勝弘, 他
    • Journal Title

      日本中性子科学会誌「波紋」 20巻

      Pages: 16-20

    • Peer Reviewed
  • [Journal Article] A neutron crystallographic analysis of a 'phosphate-free' ribonuclease A at 1.7A resolution2009

    • Author(s)
      D.Yagi, T.Yamada, I.Tanaka, 他
    • Journal Title

      Acta Cryst D vol.65

      Pages: 892-899

    • Peer Reviewed
  • [Journal Article] A neutron crystallographic analysis of T6 porcine insulin at a 2.1A resolution2009

    • Author(s)
      W.Iwai, T.Yamada, I.Tanaka, 他
    • Journal Title

      Acta Cryst D vol.65

      Pages: 1042-1050

    • Peer Reviewed
  • [Journal Article] 生物用単結晶構造解析装置2009

    • Author(s)
      田中伊知朗
    • Journal Title

      日本金属学会誌「まてりあ」 48巻

      Pages: 369-371

    • Peer Reviewed
  • [Journal Article] Methyl group conformation and hydrogen bonds in proteins determined by neutron protein crystallography2009

    • Author(s)
      Atsushi Yamaguchi, Ichiro Tanaka, 他
    • Journal Title

      Nucl.Instr.Meth.A vol.600

      Pages: 275-278

    • Peer Reviewed
  • [Journal Article] Overview of a New Biological Neutron Diffractometer (iBIX) in J-PARC2009

    • Author(s)
      田中伊知朗, 他
    • Journal Title

      Nucl.Instr.Meth.A vol.600

      Pages: 161-163

    • Peer Reviewed
  • [Journal Article] Crystallization and evaluation of hen egg-white lysozyme crystals for protein pH titration in the crystalline state2008

    • Author(s)
      Wakari Iwai, Ichiro Tanaka, 他
    • Journal Title

      Journal of Synchrotron Radiation vol.15

      Pages: 312-315

    • Peer Reviewed
  • [Journal Article] New sources and instrumentation for neutrons in biology2008

    • Author(s)
      S.C.M.Teixeira, I.Tanaka, 他
    • Journal Title

      Chemical Physics vol.345

      Pages: 133-151

    • Peer Reviewed
  • [Journal Article] A neutron crystallographic analysis of a cubic porcine insulin at pD6.62008

    • Author(s)
      Takuya Ishikawa, Ichiro Tanaka, 他
    • Journal Title

      Chemical Physics vol.345

      Pages: 152-158

    • Peer Reviewed
  • [Presentation] リボヌクレアーゼAの構造解析2011

    • Author(s)
      日下勝弘
    • Organizer
      第2回MLFシンポジウム
    • Place of Presentation
      高エネルギー加速器研究機構KEK(茨城県つくば市)(招待講演)
    • Year and Date
      2011-01-17
  • [Presentation] 茨城県生命物質構造解析装置iBIXによる初タンパク質構造解析2010

    • Author(s)
      日下勝弘
    • Organizer
      日本中性子科学会第10回年会
    • Place of Presentation
      東北大学(宮城県仙台市)(招待講演)
    • Year and Date
      2010-12-09
  • [Presentation] J-PARC茨城県生命物質構造解析装置(iBIX)による初のタンパク質中性子構造解析2010

    • Author(s)
      日下勝弘
    • Organizer
      平成22年度日本結晶学会年会
    • Place of Presentation
      大阪大学(大阪府吹田市)(招待講演)
    • Year and Date
      2010-12-03
  • [Presentation] Neutrons in diffraction structural biology making the best use of neutrons2010

    • Author(s)
      田中伊知朗
    • Organizer
      3rd International Symposium on Diffraction Structural Biology (ISDSB2010)
    • Place of Presentation
      パリ第11大学(Orsay, France)(招待(基調)講演)
    • Year and Date
      2010-05-28
  • [Presentation] 茨城県生命物質構造解析装置iBIXの概要20092009

    • Author(s)
      田中伊知朗
    • Organizer
      日本中性子科学会第9回年会
    • Place of Presentation
      茨城県東海村(招待講演)
    • Year and Date
      2009-12-10
  • [Presentation] Overview of IBARAKI Biological Crystal Diffractometer (iBIX)2009

    • Author(s)
      田中伊知朗
    • Organizer
      Neutrons in Biology 2009
    • Place of Presentation
      Santa Fe, NM, USA(invited)
    • Year and Date
      2009-10-26
  • [Presentation] Initial Neutron Protein Diffraction Results at iBIX in J-PARC2009

    • Author(s)
      田中伊知朗
    • Organizer
      International Conference on Neutron Scattering 2009
    • Place of Presentation
      Knoxville, TN, USA(invited)
    • Year and Date
      2009-05-05
  • [Presentation] 供用開始に際したJ-PARCの新しい生物用中性子回折装置(iBIX)2009

    • Author(s)
      田中伊知朗
    • Organizer
      日本薬学会 第129年会
    • Place of Presentation
      京都市(招待講演)
    • Year and Date
      2009-03-27
  • [Presentation] Introduction of a New Neutron Diffractometer Installed at J-PARC2009

    • Author(s)
      田中伊知朗
    • Organizer
      ATI international Forum 2009
    • Place of Presentation
      茨城県東海村
    • Year and Date
      2009-03-10
  • [Presentation] A new biological neutron diffractometer (iBIX) in J-PARC2008

    • Author(s)
      田中伊知朗
    • Organizer
      IUCr2008 0saka
    • Place of Presentation
      大阪市(poster)
    • Year and Date
      20080828-20080829
  • [Presentation] A Neutron Crystallographic Analysis of a Bovine Ribonuclease A at 1.4 A Resolution2008

    • Author(s)
      Yagi D., Yamada T.
    • Organizer
      ASIA SCIENCE SEMINAR ON "Frontier Science at High-Intensity Proton Accelerators"
    • Place of Presentation
      Beijing, China
    • Year and Date
      2008-10-27
  • [Presentation] Outline of a New Biological Neutron Diffactometer(iBIX) in J-PARC2008

    • Author(s)
      田中伊知朗
    • Organizer
      IUCr2008 Osaka, Satellite Meeting in Tokai, Ibaraki, Symposium on Neutron Protein Crystallography (NPC)
    • Place of Presentation
      東海村
    • Year and Date
      2008-08-21
  • [Remarks] ホームページ

    • URL

      http://info.ibaraki.ac.jp/Profiles/7/0000696/profile.html

  • [Remarks] プレス発表

    • URL

      http://www.fas.ibaraki.ac.jp/?page_id=103

  • [Remarks] 茨城県、茨城大学、日本原子力研究開発機構、J-PARCセンター、茨城県生命物質構造解析装置(iBIX)においてタンパク質結晶の構造解析に成功、茨城県政記者クラブにてプレス発表、2010年10月13日、茨城県庁、茨城県水戸市

    • URL

      http://nsb.mat.ibaraki.ac.jp/index.html

  • [Remarks] 2010年10月14日 日本経済新聞、茨城新聞、読売新聞の3新聞に10/13プレス発表内容が掲載

URL: 

Published: 2012-01-26   Modified: 2018-06-25  

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