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2011 Fiscal Year Final Research Report

Structural biology of polyubuiquitin chain recognition

Research Project

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Project/Area Number 21687009
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Structural biochemistry
Research InstitutionThe University of Tokyo

Principal Investigator

FUKAI Shuya  東京大学, 放射光連携研究機構, 准教授 (10361792)

Project Period (FY) 2009 – 2011
KeywordsX線結晶構造解析 / ユビキチン / 分子間相互作用 / 炎症シグナル / DNA損傷応答
Research Abstract

Ubiquitin is well-known as a label for protein degradation. Recent studies have showed that ubiquitin functions as labels for various cellular processes besides the protein degradation. In this research, we determined three-dimensional structures of complexes comprising ubiquitin and its binding proteins and showed how ubiquitin is recognized during responses towards DNA damage and inflammation.

  • Research Products

    (15 results)

All 2011 2010 2009 Other

All Journal Article (4 results) (of which Peer Reviewed: 4 results) Presentation (6 results) Book (4 results) Remarks (1 results)

  • [Journal Article] Specific recognition of linear ubiquitin chains by the Npl4 zinc finger(NZF) domain of the HOIL-1L subunit of the linear ubiquitin chain assembly complex2011

    • Author(s)
      Sato, Y., Fujita, H., Yoshikawa, A., Yamashita, M., Yamagata, A., Kaiser, S. E., Iwai, K., Fukai, S
    • Journal Title

      Proceedings of National Academy of Science United States of America

      Volume: 108巻 Pages: 20520-20525

    • DOI

      DOI:10.1073/pnas.1109088108

    • Peer Reviewed
  • [Journal Article] Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by NZF domains of TAB2 and TAB32009

    • Author(s)
      Sato, Y., Yoshikawa, A., Yamashita, M., Yamagata, A., Fukai, S.
    • Journal Title

      The EMBO Journal

      Volume: 28巻 Pages: 3903-3909

    • DOI

      DOI:10.1038/emboj.2009.345

    • Peer Reviewed
  • [Journal Article] Crystal structure of the NEMO ubiquitin-binding domain in complex with Lys 63-linked di-ubiquitin2009

    • Author(s)
      Yoshikawa, A., Sato, Y., Yamashita, M., Mimura, H., Yamagata, A., Fukai, S.
    • Journal Title

      FEBS Letters.

      Volume: 583巻 Pages: 3317-3322

    • DOI

      DOI:10.1016/j.febslet.2009.09.028

    • Peer Reviewed
  • [Journal Article] Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by tandem UIMs of RAP802009

    • Author(s)
      Sato, Y., Yoshikawa, A., Mimura, H., Yamashita, M., Yamagata, A., Fukai, S.
    • Journal Title

      The EMBO Journal

      Volume: 28巻 Pages: 2461-2468

    • DOI

      DOI:10.1038/emboj.2009.160

    • Peer Reviewed
  • [Presentation] 構造解析のためのユビキチン鎖の大量合成2011

    • Author(s)
      深井周也
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      ホテル阪急エキスポパーク
    • Year and Date
      2011-06-09
  • [Presentation] Structural basis of ubiquitinchain recognition by NZF domains for NF-κB activation2011

    • Author(s)
      深井周也
    • Organizer
      TNF2011
    • Place of Presentation
      淡路夢舞台国際会議場
    • Year and Date
      2011-05-18
  • [Presentation] Mechanisms for recognitionof K63-linked polyubiquitin chains2010

    • Author(s)
      深井周也
    • Organizer
      Pacifichem2010
    • Place of Presentation
      ハワイコンベンションセンター
    • Year and Date
      2010-12-19
  • [Presentation] Znフィンガーによるユビキチン鎖識別のメカニズム2010

    • Author(s)
      深井周也
    • Organizer
      平成22年度日本結晶学会年会
    • Place of Presentation
      大阪大学
    • Year and Date
      2010-12-05
  • [Presentation] ユビキチン化シグナルを読み解くユビキチン受容体の構造生物学2010

    • Author(s)
      深井周也
    • Organizer
      文部科学省科研費特定領域研究「タンパク質分解」公開シンポジウム
    • Place of Presentation
      東京ガーデンパレス
    • Year and Date
      2010-08-21
  • [Presentation] Lys63結合型ポリユビキチン鎖認識のメカニズム2009

    • Author(s)
      深井周也
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-12-10
  • [Book] 細胞工学29巻[特集]ユビキチン修飾系の多彩な機能2010

    • Author(s)
      深井周也
    • Total Pages
      1231-1235
    • Publisher
      秀潤社
  • [Book] 日本結晶学会誌52巻特集構造生物学研究の新展開2010

    • Author(s)
      佐藤裕介,深井周也
    • Total Pages
      20-24
    • Publisher
      日本結晶学会
  • [Book] 生体の科学60巻[特集]ユビキチン化による生体機能の調節2009

    • Author(s)
      佐藤裕介,深井周也
    • Total Pages
      593-598
    • Publisher
      金原一郎記念医学医療振興財団/医学書院
  • [Book] 生化学2009

    • Author(s)
      深井周也
    • Total Pages
      815-819
    • Publisher
      日本生化学会
  • [Remarks]

    • URL

      http://www.iam.u-tokyo.ac.jp/srro/

URL: 

Published: 2013-07-31  

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