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2010 Fiscal Year Final Research Report

Protein patterning and parallel analysis of DNA molecules by integrating nanoimprint lithography (NIL) and UV lithography (UVL)

Research Project

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Project/Area Number 21710129
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Microdevices/Nanodevices
Research InstitutionKyoto University

Principal Investigator

YOKOKAWA Ryuji  Kyoto University, 大学院・工学研究科・マイクロエンジニアリング専攻, 助教 (10411216)

Co-Investigator(Renkei-kenkyūsha) 笠原 賢洋  立命館大学, 生命科学部, 准教授 (70361748)
Project Period (FY) 2009 – 2010
Keywordsナノインプリント / MicroTAS / MEMS / 分子操作 / DNA
Research Abstract

We modified two ends ofλDNA by digoxigenin (DIG) and biotin for single molecule manipulation. One end labeled with DIG was immobilized on the glass surface coated by anti-DIG antibody, and the other end labeled with biotin was manipulated by gliding microtubules modified with streptavidin. After stretchingλDNA, a restriction enzyme was applied to visualize cleaving of the DNA molecule at single molecule level. To achieve highly parallel and massive DNA manipulation, we fabricated micro/nano scale perfusable multi-scale channel structures. Integration of nanoimprint lithography (NIL) and UV lithography (UVL) realized such a complex and multi-scale structures. It was evaluated by implementing a pressure-driven flow system and protein assay.

  • Research Products

    (26 results)

All 2011 2010 2009 Other

All Journal Article (5 results) (of which Peer Reviewed: 5 results) Presentation (20 results) Remarks (1 results)

  • [Journal Article] Open-Access and Multi-Directional Electroosmotic Flow Chip for Positioning Heterotypic Cells2011

    • Author(s)
      K.Terao, Y.Kitazawa, R.Yokokawa, A.Okonogi, H.Kotera
    • Journal Title

      Lab Chip vol.11

      Pages: 1507-1512

    • Peer Reviewed
  • [Journal Article] A Nano-Needle/Microtubule Composite Gliding on a Kinesin-Coated Surface for Target Molecule Transport2010

    • Author(s)
      M.C.Tarhan, R.Yokokawa, C.Bottier, D.Collard, H.Fujita
    • Journal Title

      Lab Chip vol.10

      Pages: 86-91

    • Peer Reviewed
  • [Journal Article] Individual evaluation of DEP, EP and AC-EOF effects on λDNA molecules in a DNA concentrator2010

    • Author(s)
      R.Yokokawa, Y.Manta, M.Namura, Y.Takizawa, N.C.H.Le, S.Sugiyama
    • Journal Title

      Sens.Actuators, B vol.143

      Pages: 769-775

    • Peer Reviewed
  • [Journal Article] Active transport of oil droplets along oriented microtubules by kinesin molecular motors2009

    • Author(s)
      C.Bottier, J.Fattaccioli, M.C.Tarhan, R.Yokokawa, F.O.Morin, B.Kim, D.Collard, H.Fujita
    • Journal Title

      Lab Chip vol.9

      Pages: 1694-1700

    • Peer Reviewed
  • [Journal Article] Versatile Microfluidic Total Internal Reflection (TIR)-based Devices : Application to Microbeads Velocity Measurement and Single Molecule Detection with Upright and Inverted Microscope2009

    • Author(s)
      N.C.H.Le, R.Yokokawa, D.V.Dao, T.D.Nguyen, J.Wells, S.Sugiyama
    • Journal Title

      Lab Chip vol.9

      Pages: 244-250

    • Peer Reviewed
  • [Presentation] Number of Kinesin Molecules Involved in a Bead Transport Measured by Microfluidics and Mechanical Modeling2011

    • Author(s)
      R.Yokokawa, Y.Sakai, A.Okonogi, I.Kanno, H.Kotera
    • Organizer
      MEMS 2011, pp.1365-1368
    • Place of Presentation
      Cancun, Mexico(Poster)
    • Year and Date
      20110123-20110127
  • [Presentation] Dual Q-Dot Transport on Microtubule Array with Polarity Defined by Nanotracks and Microtubule Motility Control2011

    • Author(s)
      M.Yokokawa, K.Fujimoto, M.Kitamura, R.Yokokawa, H.Kotera
    • Organizer
      MEMS 2011, pp.1349-1352
    • Place of Presentation
      Cancun, Mexico(Poster)
    • Year and Date
      20110123-20110127
  • [Presentation] Selective Kinesin and Dynein Immobilizaton and Electrical Microtubule Manipulation for Bidirectional Microtubule Motility2011

    • Author(s)
      H.Kotake, R.Yokokawa, I.Kanno, H.Kotera
    • Organizer
      MEMS 2011, pp.1373-1376
    • Place of Presentation
      Cancun, Mexico(Poster)
    • Year and Date
      20110123-20110127
  • [Presentation] UVリソグラフィとナノインプリントリソグラフィの融合によるマイクロ・ナノチャネルの作製2010

    • Author(s)
      礒辺岳, 横川隆司, 神野伊策, 小寺秀俊
    • Organizer
      第22回化学とマイクロ・ナノシステム研究会, pp.92
    • Place of Presentation
      名古屋
    • Year and Date
      20101117-20101118
  • [Presentation] ガラスチャネル内における電界印加による微小管の運動方向操作2010

    • Author(s)
      井出克志, 横川隆司, 神野伊策, 小寺秀俊
    • Organizer
      第22回化学とマイクロ・ナノシステム研究会, pp.91
    • Place of Presentation
      名古屋
    • Year and Date
      20101117-20101118
  • [Presentation] 自己組織化単分子膜を用いたモータタンパク質の付着制御による微小管運動極性制御2010

    • Author(s)
      小竹宏紀, 横川隆司, 神野伊策, 小寺秀俊
    • Organizer
      第22回化学とマイクロ・ナノシステム研究会, pp.85
    • Place of Presentation
      名古屋
    • Year and Date
      20101117-20101118
  • [Presentation] Biomotor-Based Nanotransport System Constructed by Pick-and-Place Assembly of Individual Molecules2010

    • Author(s)
      M.C.Tarhan, R.Yokokawa, L.Jalabert, D.Collard, H.Fujita
    • Organizer
      IROS 2010, pp.5628-5633
    • Place of Presentation
      Taipei, Taiwan(Oral)
    • Year and Date
      20101018-20101022
  • [Presentation] Force Measurement and Modeling for Motor Proteins between Microsphere and Microfluidic Channel Surface2010

    • Author(s)
      R.Yokokawa, Y.Sakai, A.Okonogi, I.Kanno, H.Kotera
    • Organizer
      MicroTAS2010, pp.372-374
    • Place of Presentation
      Groningen, The Netherlands(Poster)
    • Year and Date
      20101003-20101007
  • [Presentation] 電気泳動力によるモータタンパク質運動の双方向化に関する検討2010

    • Author(s)
      小竹宏紀, 横川隆司, 神野伊策, 小寺秀俊
    • Organizer
      日本機械学会2010年度年次大会, pp.135-136
    • Place of Presentation
      名古屋
    • Year and Date
      20100905-20100908
  • [Presentation] Adhesion Force Measurement of Protein-Coated Microspheres Using Shear Stress in a Microfluidic Channel2010

    • Author(s)
      Y.Sakai, R.Yokokawa, A.Okonogi, H.Kotera
    • Organizer
      APCOT2010, pp.101
    • Place of Presentation
      Perth, Australia(Poster)
    • Year and Date
      20100706-20100709
  • [Presentation] Isolating Microtubules between Parallel Walls for Single Molecular Capturing Process2010

    • Author(s)
      M.C.Tarhan, R.Yokokawa, L.Jalabert, D.Collard, H.Fujita
    • Organizer
      APCOT2010, pp.55
    • Place of Presentation
      Perth, Australia(Oral)
    • Year and Date
      20100706-20100709
  • [Presentation] モータタンパク質の選択的付加による微小管輸送方向制御2010

    • Author(s)
      小竹宏紀, 横川隆司, 神野伊策, 小寺秀俊
    • Organizer
      平成22年度電気学会センサ・マイクロマシン部門総合研究会, pp.57-61
    • Place of Presentation
      東京
    • Year and Date
      20100617-20100618
  • [Presentation] Parallel Microtubule Array with Defined Polarity and Selective Microtubule Immobilization in Nanochannels2010

    • Author(s)
      M.Kitamura, R.Yokokawa, H.Kotera
    • Organizer
      ASME-ISPS, pp.MI-B5
    • Place of Presentation
      Santa Clara, USA(Oral)
    • Year and Date
      20100614-20100615
  • [Presentation] Carriers for Molecular Capturing in a Motor Protein-Based Transport System2010

    • Author(s)
      M.C.Tarhan, C.Bottier, R.Yokokawa, D.Collard, H.Fujita
    • Organizer
      ASME-ISPS, pp.MI-B4
    • Place of Presentation
      Santa Clara, USA(Oral)
    • Year and Date
      20100614-20100615
  • [Presentation] マイクロ・ナノ構造を用いた微小管の個別極性配向と並列ナノ操作技術の確立2010

    • Author(s)
      横川雅俊, 北邨益飛, 横川隆司, 小寺秀俊
    • Organizer
      第27回「センサ・マイクロマシンと応用システム」シンポジウム, pp.34-39
    • Year and Date
      2010-10-14
  • [Presentation] 非特異的キネシン吸着ビーズのせん断流を用いた付着力測定法の検討2010

    • Author(s)
      横川隆司, 酒井佑典, 小此木孝仁, 小寺秀俊
    • Organizer
      第27回「センサ・マイクロマシンと応用システム」シンポジウム, pp.434-439
    • Place of Presentation
      島根
    • Year and Date
      2010-10-14
  • [Presentation] Kinesin Motion at Microtubule Crossings of a Nano Transport System-Precise Analysis Realized by Single Molecular Handling and Assembly-2009

    • Author(s)
      M.C.Tarhan, R.Yokokawa, L.Jalabert, C.Bottier, D.Collard, H.Fujita
    • Organizer
      MicroTAS2009, pp.1533-1535
    • Place of Presentation
      Jeju, Korea(Poster)
    • Year and Date
      20091101-20091105
  • [Presentation] Kinesin-Driven Oil Droplets Used as Carriers for Transportation of Solid Particles2009

    • Author(s)
      C.Bottier, J.Fattaccioli, M.C.Tarhan, R.Yokokawa, B.J.Kim, D.Collard, H.Fujita
    • Organizer
      MicroTAS2009, pp.1521-1523
    • Place of Presentation
      Jeju, Korea(Poster)
    • Year and Date
      20091101-20091105
  • [Presentation] Nano Monorail for Molecular Motors : Individually Manipulated Microtubules for Kinesin Motion2009

    • Author(s)
      M.C.Tarhan, L.Jalabert, R.Yokokawa, C.Bottier, D.Collard, H.Fujita
    • Organizer
      TRANSDUCERS2009, pp.2164-2167
    • Place of Presentation
      Denver, USA(Oral)
    • Year and Date
      20090621-20090625
  • [Presentation] Fabrication and Characterization of Multiple Nanowires Using Microtubule Structures2009

    • Author(s)
      K.Wada, M.C.Tarhan, C.Bottier, D.Collard, H.Fujita, R.Yokokawa
    • Organizer
      TRANSDUCERS2009, pp.1337-1340
    • Place of Presentation
      Denver, USA(Poster)
    • Year and Date
      20090621-20090625
  • [Remarks] ホームページ等

    • URL

      http://www.ksys.me.kyoto-u.ac.jp/ry/

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Published: 2012-02-13   Modified: 2016-04-21  

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