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2021 Fiscal Year Annual Research Report

Co-evolution of epidemics, interventions, and behavior in network epidemiology

Research Project

Project/Area Number 21H04595
Research InstitutionKobe University

Principal Investigator

Holme Petter  神戸大学, 計算社会科学研究センター, リサーチフェロー (50802352)

Co-Investigator(Kenkyū-buntansha) 高安 美佐子  東京工業大学, 科学技術創成研究院, 教授 (20296776)
井深 陽子  慶應義塾大学, 経済学部(三田), 教授 (20612279)
増田 直紀  早稲田大学, 理工学術院, 教授(任期付) (40415295)
浅井 雄介  国立研究開発法人国立国際医療研究センター, 国際感染症センター, 研究員 (70779991)
Beauchemin Catherine  国立研究開発法人理化学研究所, 数理創造プログラム, 副プログラムディレクター (70898931)
村田 剛志  東京工業大学, 情報理工学院, 教授 (90242289)
Project Period (FY) 2021-04-05 – 2025-03-31
KeywordsNetwork epidemiology / Network science / Theoretical epidemiology / Game theory / Behavioral modeling
Outline of Annual Research Achievements

FY2021 saw many advancements toward the objectives of the program. The PI published works about the co-evolution of sentiments, behavior, and disease spreading using social media data and a seminal study of Chinese mobility in the first year of Covid-19. Another work by the PI concerned how to represent contact data more efficiently for network epidemiology. Co-I Masuda contributed to several theoretical studies of disease spreading and how to analyze epidemic data. Co-I Ibuka had several publications about Covid-19 in Japan, and its social implications, including a seminal article about movement patterns during the Olympic games. The latter paper was co-authored by co-I Asai, who also co-authored a great number of reports about Covid-19 in Japan. Co-I Beauchemin published work on in-host viral dynamics. Co-I Takayasu published theoretical works on spreading dynamics and data science papers about opinion dynamics.

Current Status of Research Progress
Current Status of Research Progress

2: Research has progressed on the whole more than it was originally planned.

Reason

Our work is continuing along the lines of the proposal. Since Covid-19 has become a real-life laboratory for many of the research ideas of the proposal, some of the work has been changed to follow these developments. For example, Co-I Asai has been heavily involved in monitoring the impact of Covid-19 on Japanese healthcare. Data-driven studies of the Covid-10 epidemics have replaced some of the original plan's emphasis on theoretical and computational modeling, but on the whole, we are covering the research initially anticipated.

Strategy for Future Research Activity

In the future, we aim to extend the scope of our project and delve deeper into the co-evolution of awareness and epidemics, as informed by data. This year, we plan to continue working with Covid-19 data to improve to match reality better. We will refine our network epidemiological vaccination models based on the new data by incorporating experimental game theory. Specifically, we will continue our work on models of various health decisions using game theory and their impact using network epidemiology. We will also explore vaccination games on networks to develop more realistic models. To achieve this, we will simulate different scenarios and identify optimal vaccination strategies using our previously developed model.
Prof. Holme and his team will continue to lead the core analysis, including calibrating our models and integrating results from the different work packages. In parallel to these efforts, we will focus on unifying the outcomes from the work packages to build a comprehensive network-epidemiological theory of the co-evolution of epidemics and behavior.
Additionally, we will explore the impact of different intervention strategies on the spread of epidemics. We will investigate the efficacy of contact tracing, quarantine, and vaccination in reducing the transmission of infectious diseases.
Finally, we aim to provide policymakers with actionable insights and recommendations for designing effective intervention strategies to curb the spread of infectious diseases.

  • Research Products

    (43 results)

All 2022 2021 Other

All Int'l Joint Research (4 results) Journal Article (27 results) (of which Int'l Joint Research: 17 results,  Peer Reviewed: 26 results,  Open Access: 25 results) Presentation (12 results) (of which Int'l Joint Research: 10 results,  Invited: 6 results)

  • [Int'l Joint Research] The Catholic University of Korea(韓国)

    • Country Name
      KOREA (REP. OF KOREA)
    • Counterpart Institution
      The Catholic University of Korea
  • [Int'l Joint Research] La Trobe University(オーストラリア)

    • Country Name
      AUSTRALIA
    • Counterpart Institution
      La Trobe University
  • [Int'l Joint Research] University of California, Los Angeles(米国)

    • Country Name
      U.S.A.
    • Counterpart Institution
      University of California, Los Angeles
  • [Int'l Joint Research] University of Oxford(英国)

    • Country Name
      UNITED KINGDOM
    • Counterpart Institution
      University of Oxford
  • [Journal Article] The microdynamics shaping the relation between democracy and corruption2022

    • Author(s)
      Boris Podobnik, Marko Jusup, Dean Koro?ak, Petter Holme and Tomislav Lipi?
    • Journal Title

      Proc. R. Soc. A

      Volume: 478 Pages: 20210567

    • DOI

      10.1098/rspa.2021.0567

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Optimal control of networked reaction-diffusion systems2022

    • Author(s)
      Shupeng Gao, Lili Chang, Ivan Romic, Zhen Wang, Marko Jusup,Petter Holme
    • Journal Title

      Journal of the Royal Society Interface

      Volume: 18 Pages: 20210739

    • DOI

      10.1098/rsif.2021.0739

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] "Classification of endogenous and exogenous bursts in collective emotions based on Weibo comments during COVID-19"2022

    • Author(s)
      Qianyun Wu, Yukie Sano, Hideki Takayasu ,Misako Takayasu
    • Journal Title

      Scientific Reports ,12, Article number: 3120 (17 pages) (2022)

      Volume: 12, 3120 Pages: -

    • DOI

      10.1038/s41598-022-07067-w

    • Peer Reviewed / Open Access
  • [Journal Article] Epidemic dynamics on metapopulation networks with node2vec mobility2022

    • Author(s)
      Lingqi Meng, Naoki Masuda
    • Journal Title

      Journal of Theoretical Biology

      Volume: 534 Pages: 110960

    • DOI

      10.1016/j.jtbi.2021.110960

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The global migration network of sex-workers2022

    • Author(s)
      Luis E. C. Rocha, Petter Holme, Claudio D. G. Linhares
    • Journal Title

      Journal of Computational Social Science

      Volume: 5 Pages: 969-985

    • DOI

      10.1007/s42001-021-00156-2

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Network structure and community evolution online: Behavioral and emotional changes in response to COVID-192022

    • Author(s)
      Fan Fang, Tong Wang, Suoyi Tan, Saran Chen, Tao Zhou, Wei Zhang, Qiang Guo, Jianguo Liu, Petter Holme, Xin Lu
    • Journal Title

      Frontiers in Public Health

      Volume: 9 Pages: 2274

    • DOI

      10.3389/fpubh.2021.813234

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Comorbidities as risk factors for severe disease in hospitalized elderly COVID-19 patients by different age-groups in Japan2022

    • Author(s)
      Yusuke Asai, Hidetoshi Nomoto, Kayoko Hayakawa, Nobuaki Matsunaga, Shinya Tsuzuki, Mari Terada, Hiroshi Ohtsu, Koji Kitajima, Kumiko Suzuki, Tetsuya Suzuki, Keiji Nakamura, Shinichiro Morioka, Sho Saito, Fumitake Saito, Norio Ohmagari
    • Journal Title

      Gerontology

      Volume: 68 Pages: 1027-1037

    • DOI

      10.1159/000521000

    • Peer Reviewed / Open Access
  • [Journal Article] OD analysis of Hanshin expressway ETC statistics2022

    • Author(s)
      Daigo Umemoto; Takashi Kamihigashi,
    • Journal Title

      AROB 27th 2022

      Volume: - Pages: -

    • Peer Reviewed
  • [Journal Article] Mixing age and risk groups for accessing COVID-19 vaccines: a modelling study2022

    • Author(s)
      Hongming Wang, Yoko Ibuka, Ryota Nakamura
    • Journal Title

      BMJ Open

      Volume: 12 Pages: 1-10

    • DOI

      10.1136/bmjopen-2022-061139

    • Peer Reviewed / Open Access
  • [Journal Article] Randomizing hypergraphs preserving degree correlation and local clustering2022

    • Author(s)
      Kazuki Nakajima, Kazuyuki Shudo, Naoki Masuda
    • Journal Title

      IEEE Transactions on Network Science and Engineering

      Volume: 9 Pages: 1139-1153

    • DOI

      10.1109/TNSE.2021.3133380

    • Peer Reviewed / Open Access
  • [Journal Article] Social Physics2021

    • Author(s)
      Marko Jusup, Petter Holme, Kiyoshi Kanazawa, Misako Takayasu, Ivan Romic, Zhen Wang, Suncana Gecek, Tomislav Lipic, Boris Podobnik, Lin Wang, Wei Luo, Tin Klanjscek, Jingfang Fan, Stefano Boccaletti, Matjaz Perc
    • Journal Title

      Physics Reports

      Volume: 948 Pages: 1-148

    • DOI

      10.1016/j.physrep.2021.10.005

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Clinical characteristics of hospitalized COVID-19 in children: Report from the COVID-19 registry in Japan2021

    • Author(s)
      Kensuke Shoji, Takayuki Akiyama, Shinya Tsuzuki, Nobuaki Matsunaga, Yusuke Asai, Setsuko Suzuki, Noriko Iwamoto, Takanori Funaki, Norio Ohmagari
    • Journal Title

      Journal of the Pediatric Infectious Diseases Society

      Volume: 10 Pages: 1097-1100

    • DOI

      10.1093/jpids/piab085

    • Peer Reviewed / Open Access
  • [Journal Article] Autopoietic influence hierarchies in pancreatic β-cells2021

    • Author(s)
      Dean Korosak, Marko Jusup, Boris Podobnik, Andraz Stozer, Jurij Dolensek, Petter Holme, Marjan Slak Rupnik
    • Journal Title

      Physical Review Letters

      Volume: 127 Pages: 168101

    • DOI

      10.1103/PhysRevLett.127.168101

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Graph Neural Networks for Fast Node Ranking Approximation2021

    • Author(s)
      Sunil Maurya, Liu Xin, Tsuyoshi Murata
    • Journal Title

      ACM Transactions on Knowledge Discovery from Data

      Volume: 15 Pages: 1-32

    • DOI

      10.1145/3446217

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] "Universal scaling of human flow remain unchanged during the COVID-19 pandemic"2021

    • Author(s)
      Yohei Shida, Hideki Takayasu, Shlomo Havlin and Misako Takayasu
    • Journal Title

      Applied Network Science 6 ,Article number:75 (13 pages) (2021)

      Volume: 6, 75 Pages: -

    • DOI

      10.1007/s41109-021-00416-0

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] COVID-19 and Networks2021

    • Author(s)
      Tsuyoshi Murata
    • Journal Title

      New Generation Computing

      Volume: 39 Pages: 469-481

    • DOI

      10.1007/s00354-021-00134-2

    • Peer Reviewed / Open Access
  • [Journal Article] Projected graph relation-feature attention network for heterogeneous information network embedding2021

    • Author(s)
      Nuttapong Chairatanakul, Xin Liu, Tsuyoshi Murata
    • Journal Title

      Information Sciences

      Volume: 570 Pages: 769-794

    • DOI

      10.1016/j.ins.2021.04.070

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Mobility in China, 2020: a tale of four phases2021

    • Author(s)
      Suoyi Tan, Shengjie Lai, Fan Fang, Ziqiang Cao, Bin Sai, Bing Song, Bitao Dai, Shuhui Guo, Chuchu Liu, Mengsi Cai, Tong Wang, Mengning Wang, Jiaxu Li, Saran Chen, Shuo Qin, Jessica R Floyd, Zhidong Cao, Jing Tan, Xin Sun, Tao Zhou, Wei Zhang, Andrew J Tatem, Petter Holme, Xiaohong Chen, Xin Lu
    • Journal Title

      National Science Review

      Volume: 8 Pages: -

    • DOI

      10.1093/nsr/nwab148

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Predicting respiratory failure for COVID-19 patients in Japan: a simple clinical score for evaluating the need for hospitalisation2021

    • Author(s)
      Gen Yamada, Kayoko Hayakawa, Nobuaki Matsunaga, Mari Terada, Setsuko Suzuki, Yusuke Asai, Hiroshi Ohtsu, Ako Toyoda, Koji Kitajima, Shiya Tsuzuki, Sho Saito, Norio Ohmagari
    • Journal Title

      Epidemiology and Infection

      Volume: 30 Pages: 1-9

    • DOI

      10.1017/S0950268821001837

    • Peer Reviewed / Open Access
  • [Journal Article] Finite-size effects on the convergence time in continuous-opinion dynamics2021

    • Author(s)
      Hang-Hyun Jo, Naoki Masuda
    • Journal Title

      Physical Review E

      Volume: 104 Pages: 14309

    • DOI

      10.1103/PhysRevE.104.014309

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Guest Editorial Introduction to the Special Section on Reloading Feature-Rich Information Networks2021

    • Author(s)
      Andrea Tagarelli, Sabrina Gaito, Roberto Interdonato, Tsuyoshi Murata, Alessandra Sala, My T. Thai
    • Journal Title

      IEEE Transactions on Network Science and Engineering

      Volume: 8 Pages: 1256-1258

    • DOI

      10.1109/TNSE.2021.3073824

    • Open Access / Int'l Joint Research
  • [Journal Article] External validation and update of prediction models for unfavorable outcomes in hospitalized patients with COVID-19 in Japan2021

    • Author(s)
      Gen Yamada, Kayoko Hayakawa, Yusuke Asai, Nobuaki Matsunaga, Hiroshi Ohtsu, Masayuki Hojo, Masao Hashimoto, Kentaro Kobayashi, Ryo Sasaki, Tatsuya Okamoto, Yasuaki Yanagawa, Daisuke Katagiri, Mari Terada, Michiyo Suzuki, Lubna Sato, Yusuke Miyazato, Masahiro Ishikane, Shinichiro Morioka, Sho Saito, Norio Ohmagari
    • Journal Title

      Journal of Infection and Chemotherapy

      Volume: 27 Pages: 1043-1050

    • DOI

      10.1016/j.jiac.2021.04.008

    • Peer Reviewed / Open Access
  • [Journal Article] Opinion dynamics on tie-decay networks2021

    • Author(s)
      Kashin Sugishita, Mason A. Porter, Mariano Beguerisse-Diaz, Naoki Masuda
    • Journal Title

      Physical Review Research

      Volume: 3 Pages: 23249

    • DOI

      10.1103/PhysRevResearch.3.023249

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Concurrency measures in the era of temporal network epidemiology: A review2021

    • Author(s)
      Naoki Masuda, Joel C. Miller, Petter Holme
    • Journal Title

      Journal of the Royal Society Interface

      Volume: 18 Pages: 20210019

    • DOI

      10.1098/rsif.2021.0019

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Building surrogate temporal network data from observed backbones2021

    • Author(s)
      Charley Presigny, Petter Holme, Alain Barrat
    • Journal Title

      Physical Review E

      Volume: 103 Pages: 52304

    • DOI

      10.1103/PhysRevE.103.052304

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Graph Convolutional Networks for Graphs Containing Missing Features2021

    • Author(s)
      Hibiki Taguchi, Liu Xin, Tsuyoshi Murata
    • Journal Title

      Future Generation Computer Systems

      Volume: 117 Pages: 155-168

    • DOI

      10.1016/j.future.2020.11.016

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 阪神高速 ETC 統計データの時間的規則性2021

    • Author(s)
      楳本大悟, 上東貴志
    • Journal Title

      第27回交通流と自己駆動粒子系のシンポジウム 論文集

      Volume: - Pages: -

    • Peer Reviewed
  • [Presentation] Isolating and quantifying the efficacy of virus replication steps2022

    • Author(s)
      Catherine Beauchemin
    • Organizer
      Multiscale modelling and viral pandemic working group virtual seminars(on zoom)
    • Int'l Joint Research / Invited
  • [Presentation] A primer in virophysics2022

    • Author(s)
      Catherine Beauchemin
    • Organizer
      Simon Fraser University Physics seminars (on zoom)
    • Int'l Joint Research / Invited
  • [Presentation] Basics of virophysics from cell cultures to humans2022

    • Author(s)
      Catherine Beauchemin
    • Organizer
      Canadian Within-Host Modelling Seminar Series (on zoom)
    • Int'l Joint Research / Invited
  • [Presentation] System-state dynamics and recurrence of temporal networks2022

    • Author(s)
      Naoki Masuda
    • Organizer
      American Physical Society March Meeting
    • Int'l Joint Research / Invited
  • [Presentation] A state-dynamics view of bursts in contact networks, with applications to epidemic processes and metapopulation models2022

    • Author(s)
      Naoki Masuda
    • Organizer
      American Mathematical Society Spring Eastern Virtual Sectional Meeting
    • Int'l Joint Research
  • [Presentation] Cross-lingual Transfer for Text Classification with Dictionary-based Heterogeneous Graph2021

    • Author(s)
      Nuttapong Chairatanakul, Noppayut Sriwatanasakdi, Nontawat Charoenphakdee, Xin Liu, Tsuyoshi Murata
    • Organizer
      Findings of the Association for Computational Linguistics (EMNLP 2021)
    • Int'l Joint Research
  • [Presentation] Balanced Softmax Cross-Entropy for Incremental Learning2021

    • Author(s)
      Jodelet Quentin Magic, Xin Liu, Tsuyoshi Murata
    • Organizer
      The 30th International Conference on Artificial Neural Networks (ICANN 2021)
    • Int'l Joint Research
  • [Presentation] Networks, Deep Learning and COVID-192021

    • Author(s)
      Tsuyoshi Murata
    • Organizer
      International Conference on Data Science and Official Statistics (ICDSOS 2021)
    • Int'l Joint Research / Invited
  • [Presentation] Dynamics of SEIR model in random environment2021

    • Author(s)
      Yusuke Asai
    • Organizer
      Biomath 2021
    • Int'l Joint Research
  • [Presentation] 数理モデルを用いた検査・隔離の最適化2021

    • Author(s)
      浅井雄介
    • Organizer
      生命科学における数理解析探究ワークショップ
  • [Presentation] Respiratory viral infection model: is an equation worth a thousand pictures?2021

    • Author(s)
      Christian Quirouette, Nada P. Younis, Micaela B. Reddy, Catherine Beauchemin(発表者 via zoom)
    • Organizer
      44th Annual Meeting of the Molecular Biology Society of Japan (MBSJ) (hybrid - zoom+in person)
    • Int'l Joint Research / Invited
  • [Presentation] ポストコロナ社会における政策決定2021

    • Author(s)
      上東貴志
    • Organizer
      第12回横幹連合コンファレンス

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Published: 2023-12-25  

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