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2011 Fiscal Year Final Research Report

Artificial translation system using dual sense codon and divided codon boxes

Research Project

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Project/Area Number 22750145
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Chemistry related to living body
Research InstitutionThe University of Tokyo

Principal Investigator

GOTO Yuki  東京大学, 大学院・理学系研究科, 助教 (70570604)

Project Period (FY) 2010 – 2011
Keywords遺伝暗号のリプログラミング / 翻訳合成 / ペプチド / ペプチドライブラリー / リボザイム / 非天然アミノ酸
Research Abstract

We have designed two novel strategies in genetic code reprogramming,"dual genetic code" and "artificial division of codon boxes", enabling us to create extremely engineered translation system. Dual genetic code is translation-decoding system governed by two distinct reprogrammed genetic codes. One is the genetic code used for elongation reaction as usual, and the other is one exclusively used in initiation step. That is, a single codon has" dual sense "designating two distinct amino acids in initiation and elongation steps. In the approach of artificial division of codon boxes, a codon box occupied by one amino acid in natural is virtually split and two distinct amino acids are reassigned into each part of the divided codon box. This enables us to designate a codon box for an original proteinogenic and another desirable non-proteinogenic amino acids. We have experimentally demonstrated these two methodologies. Moreover, integration of these two novel strategies was also carried out, allowing us to drastically reprogram the decoding rule of translation system involving a wide array of non-standard and proteinogenic building blocks(totally over 28 spicies)

  • Research Products

    (35 results)

All 2012 2011 2010 Other

All Journal Article (13 results) (of which Peer Reviewed: 11 results) Presentation (17 results) Book (2 results) Remarks (1 results) Patent(Industrial Property Rights) (2 results) (of which Overseas: 2 results)

  • [Journal Article] Selective thioether macrocyclization of peptides having the N-terminal 2-chloroacetyl group and competing two or three cysteine residues in translation2012

    • Author(s)
      Iwasaki, K.; Goto, Y.; Katoh, T.; Suga, H.
    • Journal Title

      Org. Biomol. Chem

      Volume: (in press)

    • Peer Reviewed
  • [Journal Article] Natural product-like macro cyclic N-methyl-peptide inhibitors against a ubiquitin ligase uncovered from a ribosome-expressed de novo library2011

    • Author(s)
      Yamagishi, Y.; Shoji, I.; Miyagawa, S.; Kawakami, T.; Katoh, T.; Goto, Y.; Suga, H.
    • Journal Title

      Chem. Biol

      Volume: 12 Pages: 1183-1187

    • Peer Reviewed
  • [Journal Article] Ribosomal synthesis of backbone macrocyclic peptides2011

    • Author(s)
      Katoh, T.; Goto, Y.; Reza, M. S.; Suga, H.
    • Journal Title

      Chem. Commun

      Volume: 47 Pages: 9946-9958

    • Peer Reviewed
  • [Journal Article] Flexizymes for genetic code reprogramming2011

    • Author(s)
      Goto, Y.; Katoh, T.; Suga, H.
    • Journal Title

      Nat. Protoc

      Volume: 6 Pages: 779-790

    • Peer Reviewed
  • [Journal Article] Ribosomal Synthesis of Backbone-Macrocyclic Peptides Containingγ-Amino Acids2011

    • Author(s)
      Ohshiro, Y.; Nakajima, E.; Goto, Y.; Fuse, S.; Takahashi, T.; Doi, T.; Suga, H.
    • Journal Title

      ChemBioChem

      Volume: 12 Pages: 1183-1187

    • Peer Reviewed
  • [Journal Article] A platform technology for the discovery of novel peptide drug leads, RaPID system2011

    • Author(s)
      Shimomai, D.; Goto, Y.; Suga, H.
    • Journal Title

      Kagaku Kougyo

      Volume: 62 Pages: 109-115

  • [Journal Article] Mechanistic studies of Ser/Thr dehydration catalyzed by a member of the LanL lanthionine synthetase family2011

    • Author(s)
      Goto, Y.; Okesli, A.; van der Donk, W. A.
    • Journal Title

      Biochemistry

      Volume: 50 Pages: 891-898

    • Peer Reviewed
  • [Journal Article] A new drug discovery strategy powered by RaPID system2010

    • Author(s)
      Goto, Y.; Ito, R.; Suga, H.
    • Journal Title

      MEDCHEM NEWS

      Volume: 20 Pages: 26-31

  • [Journal Article] Discovery of isoform-specific cyclophilin binders powered by the RaPID system2010

    • Author(s)
      Ito, R.; Goto, Y.; Suga, H.
    • Journal Title

      Peptide Science

      Volume: 47 Pages: 244

    • Peer Reviewed
  • [Journal Article] Ribosomal synthesis of cyclic peptides containing various-amino acids2010

    • Author(s)
      Ohshiro, Y.; Nakajima, E.; Goto, Y.; Kawakami, T.; Ohta, A.; Suga, H.
    • Journal Title

      Peptide Science

      Volume: 47 Pages: 212

    • Peer Reviewed
  • [Journal Article] New strategies for genetic code reprogramming ; dual genetic code and artificial division of codon boxes2010

    • Journal Title

      Peptide Science

      Volume: 47 Pages: 62

    • Peer Reviewed
  • [Journal Article] Ribosome evolution for two artificial amino acids in E. coli2010

    • Author(s)
      Hayashi, G.; Goto, Y.; Suga, H.
    • Journal Title

      Chem. Biol

      Volume: 17 Pages: 320-321

    • Peer Reviewed
  • [Journal Article] Discovery of unique lanthionine synthetases reveals mechanistic and evolutionary insights2010

    • Author(s)
      Goto, Y.; Li, B.; Claesen, J.; Shi, Y.; Bibb, M. J.; van der Donk, W. A.
    • Journal Title

      PLoS Biol

      Volume: 8 Pages: e1000339

    • Peer Reviewed
  • [Presentation] PatD :アソリン骨格含有分子の高汎用性合成ツール2012

    • Author(s)
      後藤佑樹・伊藤悠美・菅裕明
    • Organizer
      日本化学会第92春季年会
    • Place of Presentation
      横浜
    • Year and Date
      2012-03-27
  • [Presentation] 翻訳後環化酵素:アソリン骨格含有分子の高汎用性合成ツール2012

    • Author(s)
      後藤佑樹・伊藤悠美・菅裕明
    • Organizer
      日本化学会第92春季年会
    • Place of Presentation
      横浜
    • Year and Date
      2012-03-27
  • [Presentation] パテラミド合成酵素は幅広いペプチド配列にアゾリン骨格を導入する2011

    • Author(s)
      後藤佑樹・伊藤悠美・菅裕明
    • Organizer
      第14回生命化学研究会
    • Place of Presentation
      白浜
    • Year and Date
      2011-12-02
  • [Presentation] A posttranslational heterocyclase : a versatile synthetic tool for various azoline-containing compounds2011

    • Author(s)
      後藤佑樹・伊藤悠美・菅裕明
    • Organizer
      9th Australian Peptide Conference
    • Place of Presentation
      Hamilton Is., Australia
    • Year and Date
      2011-11-19
  • [Presentation] PatD : a versatile synthetic tool for various azoline-containing compounds2011

    • Author(s)
      後藤佑樹・伊藤悠美・菅裕明
    • Organizer
      11th Tateshina Conference on Organic Chemistry
    • Place of Presentation
      蓼科
    • Year and Date
      2011-11-12
  • [Presentation] 無細胞翻訳系と翻訳後修飾酵素を利用した特殊骨格含有ペプチドライブラリーの迅速構築2011

    • Author(s)
      後藤佑樹
    • Organizer
      Bio Japan 2011
    • Place of Presentation
      横浜
    • Year and Date
      2011-10-05
  • [Presentation] パテラミド合成酵素:アゾリン骨格含有化合物の高汎用性合成ツール2011

    • Author(s)
      後藤佑樹・伊藤悠美・菅裕明
    • Organizer
      第5回バイオ関連化学シンポジウム
    • Place of Presentation
      つくば
    • Year and Date
      2011-09-14
  • [Presentation] ヘテロ環化修飾酵素を用いた化合物ライブラリー構築2011

    • Author(s)
      後藤佑樹
    • Organizer
      新世代の生物有機化学研究会2011
    • Place of Presentation
      京都
    • Year and Date
      2011-07-09
  • [Presentation] 二重遺伝暗号を用いて翻訳合成系をリプログラミングする2011

    • Author(s)
      後藤佑樹・伊藤悠美・人見梓・村上裕・菅裕明
    • Organizer
      第13回生命化学研究会シンポジウム
    • Place of Presentation
      仙台
    • Year and Date
      2011-01-07
  • [Presentation] Discovery and characterization of unique lanthionine synthetases reveals mechanistic and evolutionary insights2010

    • Author(s)
      Yuki Goto, Bo Li, Yanxiang Shi, Ayse Okesli, Wilfred A. vanderDonk
    • Organizer
      Pacifichem 2010
    • Place of Presentation
      Waikiki, USA
    • Year and Date
      2010-12-17
  • [Presentation] Discovery of isoform-specific cyclophilin binders powered by the RaPID system2010

    • Author(s)
      伊東利紗・後藤佑樹・菅裕明
    • Organizer
      5^<th> International Peptide Symposium
    • Place of Presentation
      京都
    • Year and Date
      2010-12-08
  • [Presentation] Ribosomal synthesis of cyclic peptides containing variousγ-amino acids2010

    • Author(s)
      大城幸紀・中島永二・後藤佑樹・川上隆史・太田淳・菅裕明
    • Organizer
      5^<th> International Peptide Symposium
    • Place of Presentation
      京都
    • Year and Date
      2010-12-07
  • [Presentation] New strategies for genetic code reprogramming ; dual genetic code and artificial division of codon boxes2010

    • Author(s)
      後藤佑樹・人見梓・村上裕・菅裕明
    • Organizer
      5^<th> International Peptide Symposium
    • Place of Presentation
      京都
    • Year and Date
      2010-12-04
  • [Presentation] 二重遺伝暗号を用いた翻訳合成系のリプログラミング2010

    • Author(s)
      後藤佑樹
    • Organizer
      理研若手研究会・新規材料創成を目指した合成生物学
    • Place of Presentation
      和光
    • Year and Date
      2010-11-19
  • [Presentation] New artificial translation system ; dual genetic code and artificial division of codon boxes2010

    • Author(s)
      後藤佑樹
    • Organizer
      7th Japanese-German Frontiers of Science Symposium
    • Place of Presentation
      Potsdam, Germany
    • Year and Date
      2010-11-13
  • [Presentation] Reprogramming genetic code and its application for drug discovery2010

    • Author(s)
      後藤佑樹
    • Organizer
      International Symposium on Nano-bio Molecular Assembly
    • Place of Presentation
      Seoul, South Korea
    • Year and Date
      2010-06-15
  • [Presentation] 短鎖ペプチドイニシエーターを用いた特殊ペプチドの翻訳合成2010

    • Author(s)
      後藤佑樹・菅裕明
    • Organizer
      日本ケミカルバイオロジー学会第5回年会
    • Place of Presentation
      横浜
    • Year and Date
      2010-05-18
  • [Book] 最新ペプチド合成技術とその創薬研究への応用2012

    • Author(s)
      伊藤悠美・後藤佑樹・菅裕明
    • Total Pages
      125-130
    • Publisher
      メディカルドゥ
  • [Book] 核酸化学のニュートレンド2011

    • Author(s)
      後藤佑樹・菅裕明
    • Total Pages
      32-35
    • Publisher
      化学同人
  • [Remarks]

    • URL

      http://www.chem.s.u-tokyo.ac.jp/users/bioorg/kenkyu/index.html

  • [Patent(Industrial Property Rights)] アゾリン化合物及びアゾール化合物のライブラリー、並びにその製造方法2011

    • Inventor(s)
      菅裕明・後藤佑樹・伊藤悠美
    • Industrial Property Rights Holder
      国立大学法人東京大学
    • Industrial Property Number
      特許、PCT/JP2012/056181
    • Filing Date
      2011-03-09
    • Overseas
  • [Patent(Industrial Property Rights)] 新規人工翻訳合成系2010

    • Inventor(s)
      菅裕明・村上裕・後藤佑樹
    • Industrial Property Rights Holder
      国立大学法人東京大学
    • Industrial Property Number
      特許、PCT/JP2011/069251
    • Filing Date
      2010-08-27
    • Overseas

URL: 

Published: 2013-07-31  

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