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2023 Fiscal Year Annual Research Report

Platform for Advanced Genome Science

Research Project

Project/Area Number 22H04925
Research InstitutionNational Institute of Genetics

Principal Investigator

黒川 顕  国立遺伝学研究所, 情報研究系, 教授 (20343246)

Co-Investigator(Kenkyū-buntansha) 川嶋 実苗  大学共同利用機関法人情報・システム研究機構(機構本部施設等), データサイエンス共同利用基盤施設, 特任准教授 (00396706)
豊田 敦  国立遺伝学研究所, ゲノム・進化研究系, 特任教授 (10267495)
鈴木 穣  東京大学, 大学院新領域創成科学研究科, 教授 (40323646)
林 哲也  九州大学, 医学研究院, 教授 (10173014)
中村 保一  国立遺伝学研究所, 情報研究系, 教授 (60370920)
野口 英樹  大学共同利用機関法人情報・システム研究機構(機構本部施設等), データサイエンス共同利用基盤施設, 特任教授 (50333349)
森 宙史  国立遺伝学研究所, 情報研究系, 准教授 (40610837)
岩崎 渉  東京大学, 大学院新領域創成科学研究科, 教授 (50545019)
森下 真一  東京大学, 大学院新領域創成科学研究科, 教授 (90292854)
浅井 潔  東京大学, 大学院新領域創成科学研究科, 教授 (30356357)
笠原 雅弘  東京大学, 大学院新領域創成科学研究科, 准教授 (60376605)
中谷 明弘  東京大学, 大学院新領域創成科学研究科, 特任教授 (60301149)
波江野 洋  東京理科大学, 研究推進機構生命医科学研究所, 准教授 (70706754)
伊藤 武彦  東京工業大学, 生命理工学院, 教授 (90501106)
山田 拓司  東京工業大学, 生命理工学院, 准教授 (10437262)
高橋 弘喜  千葉大学, 真菌医学研究センター, 准教授 (60548460)
浜田 道昭  早稲田大学, 理工学術院, 教授 (00596538)
瀬々 潤  株式会社ヒューマノーム研究所, 本社, 代表取締役社長 (40361539)
平川 英樹  公益財団法人かずさDNA研究所, ゲノム事業推進部, 主任研究員 (80372746)
島村 徹平  東京医科歯科大学, 難治疾患研究所, 教授 (00623943)
熊谷 雄太郎  国立研究開発法人産業技術総合研究所, 生命工学領域, 主任研究員 (00528408)
Project Period (FY) 2022-04-01 – 2028-03-31
Keywords次世代シーケンサー / ゲノム・メタゲノム / RNA解析 / エピゲノム / シングルセル解析 / 空間的オミックス解析 / バイオインフォマティクス / スーパーコンピュータ
Outline of Annual Research Achievements

①総括支援活動では支援課題の公募を実施し生命系のほぼ全分科から合計347件の応募がありそのうち148課題を採択した。今年度の応募数は、同じく年1回公募だった昨年度を24件上回った。一方で採択率は、先進ゲノム支援として初めて50%超を実現した昨年度を下回り、第1期先進ゲノム支援の時と同様の 42.7%に留まった。これは課題あたりの経費が高額となるシングルセル解析や空間的オミックス解析の応募数および採択数が増加したためである。拡大班会議を開催し329名の被支援者および支援班員が一堂に会してゲノムをキーワードに異分野研究交流進めた。情報解析講習会として初級者編(参加者282名)、中級者編(参加者116名)を開催した。
②大規模配列解析拠点ネットワーク支援活動においては、1)長鎖シーケンシングのためにPacBio Revio、2)空間的オミックス解析のためにXeniumを導入し、それらの試行や条件検討、技術支援者の訓練も進め、支援で提供できるようにした。染色体レベルの高精度ゲノム配列決定(遺伝研)、空間的遺伝子発現解析(東大新領域)、近縁菌株が集積した試料からの高精度MAGの構築(九大)等を進めた。
③情報解析支援活動においては、スパコン(遺伝研、東大医科研ヒトゲノム解析センター、東大情報基盤センター、東工大TSUBAME、産総研、京大化研、かずさDNA研等)を活用するとともに、利用量や占有の必要性に応じ、各機関や研究室の計算機を使用して支援を進めた。メタゲノム温度計(遺伝研)、LLPSにおけるクライアントタンパク質予測ツールSeq2Phase、難読領域に特化したゲノムアセンブラJTK(東大新領域)、高精度遺伝子アノテーションパイプラインGINGER(東工大)、深層生成モデルによるシングルセル解析と空間解析の統合deepCOLOR(東京医科歯科大)等を進め、33報の論文を発表した。

Current Status of Research Progress
Current Status of Research Progress

2: Research has progressed on the whole more than it was originally planned.

Reason

・研究支援代表の下、研究支援分担者21名、研究支援協力者11名、総勢33名の班員が全国12の大学・研究機関(部局数は13)から参加して支援体制を構築した。また、国立遺伝学研究所を中核機関とし、参加する班員が所属する主な機関を連携機関とする連携ネットワークを形成して支援活動を展開した。
・支援課題公募については、透明性を確保するために審査委員会は領域外有識者のみで構成し、領域からの技術的・経費的な情報提供を参考に支援課題を決定した。支援希望内容は各課題で拡大する傾向にあるが、経費上限を設定するなどしてできるだけ多く支援するように努めた。主たる支援技術分類は、新規ゲノム決定 : 15件、変異解析 : 17件、修飾解析 : 32件、RNA解析 :35件、メタゲノム解析等 : 2件、超高感度解析:52件、情報解析のみ : 13件、合計166件であり、多様な技術の提供ができた。
・支援成果を含む論文が 171 報報告された(2023年4月以降)。さらに第1期先進ゲノム支援および第1期、第2期にまたがる成果も続々と論文発表されている。
・拡大班会議を開催し、支援依頼者の若手共同研究者の旅費援助をするなどして、支援側と依頼者の交流を深めることができた。
・一般社団法人ゲノムテクノロジー研究会との共催により、第14回国際ゲノム会議(14AGW)を開催した。テーマは「Complete Human Genome and Beyond」とし、ゲノム医科学分野における最新の研究成果や新技術がもたらす新しい展開など、ゲノム研究の最前線についての議論が交わされた。

Strategy for Future Research Activity

・国際レベルの最先端技術を提供するために、支援拠点における機器の導入、支援技術の高度化を引き続き進める。昨年度に引き続き東大拠点に最先端の空間解析機器を導入した。最先端機器を使いこなすことができる世界トップレベルの支援班員が、優れた研究支援課題に応用するため支援機器・技術の整備を進め、さらに解析技術を向上させ次の支援に活かす、という好循環を維持する。
・支援応募数は今後も増える可能性があり、情報解析支援のキャパシティを超える恐れがある。すそ野拡大という観点からも、依頼者自らが一般的な解析をできるよう人材育成することも重要である。導入している、情報解析講習会、OJT、支援技術コンサルテーションの 3 種類の教育システムはいずれも好評を得ている。遺伝研スパコン上の Nextflow を活用し、nf-coreに加え支援班員が構築した解析パイプラインを支援依頼者も比較的容易に実行することが可能な仕組みの導入(併せて利用講習会)を検討している。
・最先端機器を組み合わせ多様かつ膨大なデータから新たな知識を見出す研究が世界の主流となっており、現在一律で設定している消耗品経費の限度額では満足な成果が得られない状況となりつつある。中途半端な支援は効率が悪く、経費をかけた割には成果が出ないという状態になりかねない。採択率が多少下がっても、高効率の支援ができるよう、限度額を上げるなど検討する。

  • Research Products

    (667 results)

All 2024 2023 Other

All Int'l Joint Research (6 results) Journal Article (201 results) (of which Int'l Joint Research: 34 results,  Peer Reviewed: 185 results,  Open Access: 165 results) Presentation (443 results) (of which Int'l Joint Research: 145 results,  Invited: 164 results) Book (9 results) Remarks (5 results) Patent(Industrial Property Rights) (2 results) Funded Workshop (1 results)

  • [Int'l Joint Research] National Institute of Health/University of California/Harvard Medical School(米国)

    • Country Name
      U.S.A.
    • Counterpart Institution
      National Institute of Health/University of California/Harvard Medical School
    • # of Other Institutions
      11
  • [Int'l Joint Research] Chinese Academy of Sciences/Fudan University/Shenzhen University(中国)

    • Country Name
      CHINA
    • Counterpart Institution
      Chinese Academy of Sciences/Fudan University/Shenzhen University
    • # of Other Institutions
      9
  • [Int'l Joint Research] FAU Erlangen-Nurnberg/Berlin Institute of Health/Physikalisch-Technische Bundesanstalt(ドイツ)

    • Country Name
      GERMANY
    • Counterpart Institution
      FAU Erlangen-Nurnberg/Berlin Institute of Health/Physikalisch-Technische Bundesanstalt
    • # of Other Institutions
      9
  • [Int'l Joint Research] University of Technology Sydney/University of Western Australia/CSIRO Agriculture and Food(オーストラリア)

    • Country Name
      AUSTRALIA
    • Counterpart Institution
      University of Technology Sydney/University of Western Australia/CSIRO Agriculture and Food
    • # of Other Institutions
      3
  • [Int'l Joint Research] University College London/University of Cambridge/Plymouth University(英国)

    • Country Name
      UNITED KINGDOM
    • Counterpart Institution
      University College London/University of Cambridge/Plymouth University
    • # of Other Institutions
      5
  • [Int'l Joint Research]

    • # of Other Countries
      26
  • [Journal Article] Neonatal skin dysbiosis to infantile atopic dermatitis: Mitigating effects of skin care2024

    • Author(s)
      Reika Aoyama、Seitaro Nakagawa、Yoko Ichikawa、Naohiro Inohara、Yuriko Yamazaki、Tomoka Ito、Takashi Sugihira、Michihiro Kono、Masashi Akiyama、Hiroki Takahashi、Akiko Takaya、Fumitaka Ichikawa、Taiji Nakano、Seiko Tanaka、Yutaka Koyano、Manabu Fujimoto、Gabriel Nunez、Naoki Shimojo、Yuumi Nakamura
    • Journal Title

      Allergy

      Volume: - Pages: -

    • DOI

      10.1111/all.16095

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The history of ancient Japanese dogs revealed by mitogenomes2024

    • Author(s)
      Xiayire Xiaokaiti、Takao Sato、Kenji Kasai、Kenichi Machida、Kyomi Yamazaki、Naomitsu Yamaji、Hiroki Kikuchi、Jun Gojobori、Hitomi Hongo、Yohey Terai、Takashi Gakuhari
    • Journal Title

      Anthropological Science

      Volume: 132(1) Pages: 1~11

    • DOI

      10.1537/ase.230617

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Model systems for discovering evolutionary singularity of bilaterian physiological regulation: lessons from studies on simple/primitive flatworms2024

    • Author(s)
      Shunsuke Mori、Aoshi Kobayashi、Hirotaka Sakamoto、Mayuko Hamada、Tatsuya Sakamoto、Ryo Nakamura
    • Journal Title

      Biophysics and Physicobiology

      Volume: - Pages: -

    • DOI

      10.2142/biophysico.bppb-v21.s012

    • Peer Reviewed / Open Access
  • [Journal Article] Regulation of lymphoid-myeloid lineage bias through regnase-1/3-mediated control of Nfkbiz2024

    • Author(s)
      Takuya Uehata、Shinnosuke Yamada、Daisuke Ori、Alexis Vandenbon、Amir Giladi、Adam Jelinski、Yasuhiro Murakawa、Hitomi Watanabe、Kazuhiro Takeuchi、Kazunori Toratani、Takashi Mino、Markus Landthaler、Hiroshi Kawamoto、Hans-Reimer Rodewald、Ido Amit、Ryo Yamamoto、Masaki Miyazaki、Osamu Takeuchi et al.
    • Journal Title

      Blood

      Volume: 143(3) Pages: 243~257

    • DOI

      10.1182/blood.2023020903

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Heterogeneity in maternal provision within clutches of eggs inresponse to thermal stress during the embryonic stage2024

    • Author(s)
      Sato A、Mihirogi Y.、Wood C.、Suzuki Y.、Truebano T.、Bishop J
    • Journal Title

      BMC Ecology and Evolution

      Volume: 24 Pages: -

    • DOI

      10.1186/s12862-024-02203-8

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] RNA methylation in inflammatory bowel disease2024

    • Author(s)
      Yuki Ozato、Tomoaki Hara、Sikun Meng、Hiromichi Sato、Shotaro Tatekawa、Mamoru Uemura、Takeshi Yabumoto、Shizuka Uchida、Kazuhiko Ogawa、Yuichiro Doki、Hidetoshi Eguchi、Hideshi Ishii
    • Journal Title

      Cancer Science

      Volume: - Pages: -

    • DOI

      10.1111/cas.16048

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Identification of activity-based biomarkers for early-stage pancreatic tumors in blood using single-molecule enzyme activity screening2024

    • Author(s)
      Shingo Sakamoto、Hideto Hiraide、Mayano Minoda、Nozomi Iwakura、Misa Suzuki、Jun Ando、Chiharu Takahashi、Ikuko Takahashi、Kazue Murai、Yu Kagami、Tadahaya Mizuno、Tohru Koike、Satoshi Nara、Chigusa Morizane、Susumu Hijioka、Ayumi Kashiro、Kazufumi Honda、Rikiya Watanabe、Yasuteru Urano、Toru Komatsu
    • Journal Title

      Cell Reports Methods

      Volume: 4 Pages: 100688

    • DOI

      10.1016/j.crmeth.2023.100688

    • Peer Reviewed / Open Access
  • [Journal Article] Single-cell colocalization analysis using a deep generative model2024

    • Author(s)
      Yasuhiro Kojima、Shinji Mii、Shuto Hayashi、Haruka Hirose、Masato Ishikawa、Masashi Akiyama、Atsushi Enomoto、Teppei Shimamura
    • Journal Title

      Cell Systems

      Volume: 15 Pages: 180~192.e7

    • DOI

      10.1016/j.cels.2024.01.007

    • Peer Reviewed
  • [Journal Article] Chromatin organization and behavior in HRAS-transformed mouse fibroblasts2024

    • Author(s)
      Aoi Otsuka、Katsuhiko Minami、Koichi Higashi、Akane Kawaguchi、Sachiko Tamura、Satoru Ide、Michael J. Hendzel、Ken Kurokawa、Kazuhiro Maeshima
    • Journal Title

      Chromosoma

      Volume: - Pages: -

    • DOI

      10.1007/s00412-024-00817-x

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genomic diversity of the pathogenic fungus Aspergillus fumigatus in Japan reveals the complex genomic basis of azole resistance2024

    • Author(s)
      Xiaohui He、Yoko Kusuya、Daisuke Hagiwara、Takahito Toyotome、Teppei Arai、Cai Bian、Masaki Nagayama、Saho Shibata、Akira Watanabe、Hiroki Takahashi
    • Journal Title

      Communications Biology

      Volume: 7(1) Pages: 274

    • DOI

      10.1038/s42003-024-05902-6

    • Peer Reviewed / Open Access
  • [Journal Article] Paneth-like cells produced from OLFM4 stem cells support OLFM4 stem cell growth in advanced colorectal cancer2024

    • Author(s)
      Mizuho Sakahara、Takuya Okamoto、Upasna Srivastava、Yasuko Natsume、Hitomi Yamanaka、Yutaka Suzuki、Kazutaka Obama、Satoshi Nagayama、Ryoji Yao
    • Journal Title

      Communications Biology

      Volume: 7(1) Pages: 27

    • DOI

      10.1038/s42003-023-05504-8

    • Peer Reviewed / Open Access
  • [Journal Article] Conserved CKI1-mediated signaling is required for female germline specification in Marchantia polymorpha2024

    • Author(s)
      Haonan Bao、Rui Sun、Megumi Iwano、Yoshihiro Yoshitake、Shiori S. Aki、Masaaki Umeda、Ryuichi Nishihama、Shohei Yamaoka、Takayuki Kohchi
    • Journal Title

      Current Biology

      Volume: 34 Pages: 1324~1332.e6

    • DOI

      10.1016/j.cub.2024.01.013

    • Peer Reviewed
  • [Journal Article] Genomic screening of fish-specific genes in gnathostomes and their functions in fin development2024

    • Author(s)
      Hidehiro Kudoh、Sayuri Yonei-Tamura、Gembu Abe、Junichi Iwakiri、Masahiro Uesaka、Takashi Makino、Koji Tamura
    • Journal Title

      Development, Growth & Differentiation

      Volume: 66(3) Pages: 235~247

    • DOI

      10.1111/dgd.12918

    • Peer Reviewed / Open Access
  • [Journal Article] Genome assembly of Genji firefly (Nipponoluciola cruciata) reveals novel luciferase-like luminescent proteins without peroxisome targeting signal2024

    • Author(s)
      Kentaro Fukuta、Dai-ichiro Kato、Juri Maeda、Atsuhiro Tsuruta、Hirobumi Suzuki、Yukio Nagano、Hisao Tsukamoto、Kazuki Niwa、Makoto Terauchi、Atsushi Toyoda、Asao Fujiyama、Hideki Noguchi
    • Journal Title

      DNA Research

      Volume: 31 Pages: -

    • DOI

      10.1093/dnares/dsae006

    • Peer Reviewed / Open Access
  • [Journal Article] Modeling the SDF-1/CXCR4 protein using advanced artificial intelligence and antagonist screening for Japanese anchovy2024

    • Author(s)
      Issei Yahiro、Kyle D. Barnuevo、Oga Sato、Sipra Mohapatra、Atsushi Toyoda、Takehiko Itoh、Kaoru Ohno、Michiya Matsuyama、Tapas Chakraborty、 Kohei Ohta
    • Journal Title

      Frontiers in Physiology

      Volume: 15 Pages: 1349119

    • DOI

      10.3389/fphys.2024.1349119

    • Peer Reviewed / Open Access
  • [Journal Article] Left-right Myosin-Is, Myosin1C, and Myosin1D exhibit distinct single molecule behaviors on the plasma membrane of Drosophila macrophages2024

    • Author(s)
      Sosuke Utsunomiya、Kazutoshi Takebayashi、Asuka Yamaguchi、Takeshi Sasamura、Mikiko Inaki、Masahiro Ueda、Kenji Matsuno
    • Journal Title

      Genes to Cells

      Volume: 29 Pages: 380~396

    • DOI

      10.1111/gtc.13110

    • Peer Reviewed / Open Access
  • [Journal Article] Genomic reconsideration of fish non-monophyly: why cannot we simply call them all ‘fish’?2024

    • Author(s)
      Shigehiro Kuraku、Mana Sato、Kohta Yoshida、Yoshinobu Uno
    • Journal Title

      Ichthyological Research

      Volume: 71 Pages: 1~12

    • DOI

      10.1007/s10228-023-00939-9

    • Peer Reviewed / Open Access
  • [Journal Article] Evaluation of the pathogenic potential of germline DDX41 variants in hematopoietic neoplasms using the ACMG/AMP guidelines2024

    • Author(s)
      Hirotaka Matsui、Makoto Hirata
    • Journal Title

      International Journal of Hematology

      Volume: 119(5) Pages: 552~563

    • DOI

      10.1007/s12185-024-03728-w

    • Peer Reviewed / Open Access
  • [Journal Article] Germline Variants and Characteristic Features of Hereditary Hematological Malignancy Syndrome2024

    • Author(s)
      Hironori Arai、Hirotaka Matsui、SungGi Chi、Yoshikazu Utsu、Shinichi Masuda、Nobuyuki Aotsuka、Yosuke Minami
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 25(1) Pages: 652

    • DOI

      10.3390/ijms25010652

    • Peer Reviewed / Open Access
  • [Journal Article] Abstract 1020 Inclusive living subcellular sequencing clarifies physical physiological and human pathological features in osteoimmune diversity2024

    • Author(s)
      Hiroyuki Okada、Yuta Terui、Asuka Terashima、Francesca Gori、Yutaka Suzuki、Roland Baron、Ung-il Chung、Sakae Tanaka、Hironori Hojo
    • Journal Title

      Journal of Biological Chemistry

      Volume: 300 Pages: 106624

    • DOI

      10.1016/j.jbc.2024.106624

    • Peer Reviewed / Open Access
  • [Journal Article] PIGB maintains nuclear lamina organization in skeletal muscle of Drosophila2024

    • Author(s)
      Miki Yamamoto-Hino、Masaru Ariura、Masahito Tanaka、Yuka W. Iwasaki、Kohei Kawaguchi、Yuta Shimamoto、Satoshi Goto
    • Journal Title

      Journal of Cell Biology

      Volume: 223(2) Pages: -

    • DOI

      10.1083/jcb.202301062

    • Peer Reviewed / Open Access
  • [Journal Article] Crosstalk within and beyond the Polycomb repressive system2024

    • Author(s)
      Tianyi Hideyuki Shi、Hiroki Sugishita、Yukiko Gotoh
    • Journal Title

      Journal of Cell Biology

      Volume: 223 Pages: -

    • DOI

      10.1083/jcb.202311021

    • Peer Reviewed / Open Access
  • [Journal Article] dwctaxon, an R package for editing and validatingtaxonomic data in Darwin Core format2024

    • Author(s)
      Joel H. Nitta、Wataru Iwasaki
    • Journal Title

      Journal of Open Source Software

      Volume: 9 Pages: 6215

    • DOI

      10.21105/joss.06215

    • Peer Reviewed / Open Access
  • [Journal Article] Chromatin structure in totipotent mouse early preimplantation embryos2024

    • Author(s)
      Masatoshi OOGA
    • Journal Title

      Journal of Reproduction and Development

      Volume: - Pages: -

    • DOI

      10.1262/jrd.2023-106

    • Peer Reviewed / Open Access
  • [Journal Article] Impact of ACSL4 on the prognosis of hepatocellular carcinoma: Association with cancer-associated fibroblasts and the tumour immune microenvironment2024

    • Author(s)
      Katsuya Toshida、Shinji Itoh、Norifumi Iseda、Takahiro Tomiyama、Shohei Yoshiya、Takeo Toshima、Yu-Chen Liu、Takeshi Iwasaki、Daisuke Okuzaki、Koji Taniguchi、Yoshinao Oda、Masaki Mori、Tomoharu Yoshizumi
    • Journal Title

      Liver International

      Volume: 44 Pages: 1011~1023

    • DOI

      10.1111/liv.15839

    • Peer Reviewed
  • [Journal Article] Draft genome sequence of the basidiomycetous yeast Mrakia hoshinonis JCM 32575 T isolated from Ellesmere Island, Canadian High Arctic2024

    • Author(s)
      Tatsuya Fujikawa、Jun-ichi Ishihara、Warwick F. Vincent、Masaki Uchida、Masaharu Tsuji
    • Journal Title

      Microbiology Resource Announcements

      Volume: - Pages: e0082023

    • DOI

      10.1128/mra.00820-23

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Involvement of a putative acyltransferase gene in sporangium formation in Actinoplanes missouriensis2024

    • Author(s)
      Shixuan Hu、Satoshi Maeda、Takeaki Tezuka、Yasuo Ohnishi
    • Journal Title

      Microbiology Spectrum

      Volume: 12(5) Pages: -

    • DOI

      10.1128/spectrum.04010-23

    • Peer Reviewed / Open Access
  • [Journal Article] SLFN11 is a BRCA Independent Biomarker for the Response to Platinum-Based Chemotherapy in High-Grade Serous Ovarian Cancer and Clear Cell Ovarian Carcinoma2024

    • Author(s)
      Hidehiko Akashi、Nozomi Yachida、Haruka Ueda、Manako Yamaguchi、Kaoru Yamawaki、Ryo Tamura、Kazuaki Suda、Tatsuya Ishiguro、Sosuke Adachi、Yoshikazu Nagase、Yutaka Ueda、Masashi Ueda、Kaoru Abiko、Masahiro Kagabu、Tsukasa Baba、Hirofumi Nakaoka、Takayuki Enomoto、Junko Murai、Kosuke Yoshihara
    • Journal Title

      Molecular Cancer Therapeutics

      Volume: 23(1) Pages: 106~116

    • DOI

      10.1158/1535-7163.mct-23-0257

    • Peer Reviewed
  • [Journal Article] Investigation of the usefulness of liver-specific deconvolution method by establishing a liver benchmark dataset2024

    • Author(s)
      Iori Azuma、Tadahaya Mizuno、Katsuhisa Morita、Yutaka Suzuki、Hiroyuki Kusuhara
    • Journal Title

      NAR Genomics and Bioinformatics

      Volume: 6(1) Pages: lqad111

    • DOI

      10.1093/nargab/lqad111

    • Peer Reviewed / Open Access
  • [Journal Article] Mechanisms of action and resistance in histone methylation-targeted therapy2024

    • Author(s)
      Makoto Yamagishi、Yuta Kuze、Seiichiro Kobayashi、Makoto Nakashima、Satoko Morishima、Toyotaka Kawamata、Junya Makiyama、Kako Suzuki、Masahide Seki、Kazumi Abe、Kiyomi Imamura、Yoshiyuki Hizukuri、Yukihiro Taira、Yasuhito Nannya、Arinobu Tojo、Toshiki Watanabe、Shinji Tsutsumi、Yutaka Suzuki、Kaoru Uchimaru et al.
    • Journal Title

      Nature

      Volume: 627(8002) Pages: 221~228

    • DOI

      10.1038/s41586-024-07103-x

    • Peer Reviewed / Open Access
  • [Journal Article] Molecular basis promoting centriole triplet microtubule assembly2024

    • Author(s)
      Yutaka Takeda、Takumi Chinen、Shunnosuke Honda、Sho Takatori、Shotaro Okuda、Shohei Yamamoto、Masamitsu Fukuyama、Koh Takeuchi、Taisuke Tomita、Shoji Hata、Daiju Kitagawa
    • Journal Title

      Nature Communications

      Volume: 15 Pages: -

    • DOI

      10.1038/s41467-024-46454-x

    • Peer Reviewed / Open Access
  • [Journal Article] Japanese wolves are most closely related to dogs and share DNA with East Eurasian dogs2024

    • Author(s)
      Jun Gojobori、Nami Arakawa、Xiayire Xiaokaiti、Yuki Matsumoto、Shuichi Matsumura、Hitomi Hongo、Naotaka Ishiguro、Yohey Terai
    • Journal Title

      Nature Communications

      Volume: 15 Pages: 1680

    • DOI

      10.1038/s41467-024-46124-y

    • Peer Reviewed / Open Access
  • [Journal Article] Genome-wide ATAC-see screening identifies TFDP1 as a modulator of global chromatin accessibility2024

    • Author(s)
      Satoko Ishii、Taishi Kakizuka、Sung-Joon Park、Ayako Tagawa、Chiaki Sanbo、Hideyuki Tanabe、Yasuyuki Ohkawa、Mahito Nakanishi、Kenta Nakai、Yusuke Miyanari
    • Journal Title

      Nature Genetics

      Volume: 56 Pages: 473~482

    • DOI

      10.1038/s41588-024-01658-1

    • Peer Reviewed / Open Access
  • [Journal Article] Deep generative design of RNA family sequences2024

    • Author(s)
      Shunsuke Sumi、Michiaki Hamada、Hirohide Saito
    • Journal Title

      Nature Methods

      Volume: 21 Pages: 435~443

    • DOI

      10.1038/s41592-023-02148-8

    • Peer Reviewed / Open Access
  • [Journal Article] Revealing neuropilin expression patterns in pancreatic cancer: from single-cell to therapeutic opportunities2024

    • Author(s)
      Sikun Meng、Tomoaki Hara、Hiromichi Sato、Shotaro Tatekawa、Yoshiko Tsuji、Yoshiko Saito、Yumiko Hamano、Yasuko Arao、Noriko Gotoh、Kazuhiko Ogawa、Hideshi Ishii
    • Journal Title

      Oncology Letters

      Volume: 27 Pages: 113

    • DOI

      10.3892/ol.2024.14247

    • Peer Reviewed / Open Access
  • [Journal Article] Gene expression and metabolite levels converge in the thermogenic spadix of skunk cabbage2024

    • Author(s)
      Haruka Tanimoto、Yui Umekawa、Hideyuki Takahashi、Kota Goto、Kikukatsu Ito
    • Journal Title

      Plant Physiology

      Volume: - Pages: -

    • DOI

      10.1093/plphys/kiae059

    • Peer Reviewed / Open Access
  • [Journal Article] QTL analysis of femaleness in monoecious spinach and fine mapping of a major QTL using an updated version of chromosome-scale pseudomolecules2024

    • Author(s)
      Kaoru Yamano、Akane Haseda、Keisuke Iwabuchi、Takayuki Osabe、Yuki Sudo、Babil Pachakkil、Keisuke Tanaka、Yutaka Suzuki、Atsushi Toyoda、Hideki Hirakawa、Yasuyuki Onodera
    • Journal Title

      PLOS ONE

      Volume: 19(2) Pages: e0296675

    • DOI

      10.1371/journal.pone.0296675

    • Peer Reviewed / Open Access
  • [Journal Article] Metagenomic analyses of 7000 to 5500 years old coprolites excavated from the Torihama shell-mound site in the Japanese archipelago2024

    • Author(s)
      Luca Nishimura、Akio Tanino、Mayumi Ajimoto、Takafumi Katsumura、Motoyuki Ogawa、Kae Koganebuchi、Daisuke Waku、Masahiko Kumagai、Ryota Sugimoto、Hirofumi Nakaoka、Hiroki Oota、Ituro Inoue
    • Journal Title

      PLOS ONE

      Volume: 19 Pages: e0295924

    • DOI

      10.1371/journal.pone.0295924

    • Peer Reviewed / Open Access
  • [Journal Article] RN7SL1 may be translated under oncogenic conditions2024

    • Author(s)
      Tomoaki Hara、Sikun Meng、Yoshiko Tsuji、Yasuko Arao、Yoshiko Saito、Hiromichi Sato、Daisuke Motooka、Shizuka Uchida、Hideshi Ishii
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 121(12) Pages: -

    • DOI

      10.1073/pnas.2312322121

    • Peer Reviewed / Open Access
  • [Journal Article] A predisposed motor bias shapes individuality in vocal learning2024

    • Author(s)
      Noriyuki Toji、Azusa Sawai、Hongdi Wang、Yu Ji、Rintaro Sugioka、Yasuhiro Go、Kazuhiro Wada
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 121 Pages: -

    • DOI

      10.1073/pnas.2308837121

    • Peer Reviewed
  • [Journal Article] Exploration of cell type-specific somatic mutations in schizophrenia and the impact of maternal immune activation on the somatic mutation profile in the brain2024

    • Author(s)
      Jianbin Du、Yutaka Nakachi、Yui Murata、Emi Kiyota、Tadafumi Kato、Miki Bundo、Kazuya Iwamoto
    • Journal Title

      Psychiatry and Clinical Neurosciences

      Volume: 78 Pages: 237~247

    • DOI

      10.1111/pcn.13640

    • Peer Reviewed / Open Access
  • [Journal Article] Sperm-specific histone H1 in highly condensed sperm nucleus of Sargassum horneri2024

    • Author(s)
      Yu Takeuchi、Shinya Sato、Chikako Nagasato、Taizo Motomura、Shujiro Okuda、Masahiro Kasahara、Fumio Takahashi、Shinya Yoshikawa
    • Journal Title

      Scientific Reports

      Volume: 14(1) Pages: 3387

    • DOI

      10.1038/s41598-024-53729-2

    • Peer Reviewed / Open Access
  • [Journal Article] Decreased Proteasomal Function Exacerbates Endoplasmic Reticulum Stress-Induced Chronic Inflammation in Obese Adipose Tissue2024

    • Author(s)
      Shimpei Nakagawa、Aya Fukui-Miyazaki、Takuma Yoshida、Yasushi Ishii、Eri Murata、Koji Taniguchi、Akihiro Ishizu、Masanori Kasahara、Utano Tomaru
    • Journal Title

      The American Journal of Pathology

      Volume: 194(6) Pages: 1033~1046

    • DOI

      10.1016/j.ajpath.2024.02.007

    • Peer Reviewed
  • [Journal Article] Rhizoviticin is an alphaproteobacterial tailocin that mediates biocontrol of grapevine crown gall disease2024

    • Author(s)
      Tomoya Ishii、Natsuki Tsuchida、Niarsi Merry Hemelda、Kirara Saito、Jiyuan Bao、Megumi Watanabe、Atsushi Toyoda、Takehiro Matsubara、Mayuko Sato、Kiminori Toyooka、Nobuaki Ishihama、Ken Shirasu、Hidenori Matsui、Kazuhiro Toyoda、Yuki Ichinose、Tetsuya Hayashi、Akira Kawaguchi、Yoshiteru Noutoshi
    • Journal Title

      The ISME Journal

      Volume: 18(1) Pages: wrad003

    • DOI

      10.1093/ismejo/wrad003

    • Peer Reviewed / Open Access
  • [Journal Article] Impact of translational regulation on diel expression revealed by time-series ribosome profiling in Arabidopsis2024

    • Author(s)
      Haruka Aoyama、Toshihiro Arae、Yui Yamashita、Atsushi Toyoda、Satoshi Naito、Naoyuki Sotta、Yukako Chiba
    • Journal Title

      The Plant Journal

      Volume: - Pages: -

    • DOI

      10.1111/tpj.16716

    • Peer Reviewed
  • [Journal Article] Complex plant responses to drought and heat stress under climate change2024

    • Author(s)
      Hikaru Sato、Junya Mizoi、Kazuo Shinozaki、Kazuko Yamaguchi-Shinozaki
    • Journal Title

      The Plant Journal

      Volume: - Pages: -

    • DOI

      10.1111/tpj.16612

    • Peer Reviewed / Open Access
  • [Journal Article] Is euchromatin really open in the cell?2024

    • Author(s)
      Kazuhiro Maeshima、Shiori Iida、Masa A. Shimazoe、Sachiko Tamura、Satoru Ide
    • Journal Title

      Trends in Cell Biology

      Volume: 34(1) Pages: 7~17

    • DOI

      10.1016/j.tcb.2023.05.007

    • Peer Reviewed
  • [Journal Article] がんの免疫逃避進化のシミュレーションモデル研究2024

    • Author(s)
      Haeno HIroshi、Saeki Koichi
    • Journal Title

      実験医学

      Volume: 42(1) Pages: -

    • DOI

      10.18958/7405-00001-0001114-00

  • [Journal Article] 特集 メラノーマ診療Up-To-Date 臨床研究2 メラノーマの治療選択における包括的がんゲノムプロファイリング検査2024

    • Author(s)
      肥田 時征、加藤 潤史、井戸川 雅史、宇原 久
    • Journal Title

      皮膚病診療

      Volume: 46(1) Pages: 28~33

    • DOI

      10.24733/pd.0000003695

  • [Journal Article] 特集 ゲノム医学を外科診療に活かす! 癌種別・ゲノム情報の治療選択への活用 食道癌-真の個別化治療へ向けたゲノム医学の応用2024

    • Author(s)
      西塚 哲、佐々木 太雅、岩谷 岳
    • Journal Title

      臨床外科

      Volume: 79(2) Pages: 168~171

    • DOI

      10.11477/mf.1407214436

  • [Journal Article] Meningiomas in patients with neurofibromatosis type 2 predominantly comprise 'immunogenic subtype' tumours characterised by macrophage infiltration2023

    • Author(s)
      Yu Teranishi、Satoru Miyawaki、Masahiro Nakatochi、Atsushi Okano、Kenta Ohara、Hiroki Hongo、Daiichiro Ishigami、Yu Sakai、Daisuke Shimada、Shunsaku Takayanagi、Masako Ikemura、Daisuke Komura、Hiroto Katoh、Jun Mitsui、Shinichi Morishita、Tetsuo Ushiku、Shumpei Ishikawa、Hirofumi Nakatomi、Nobuhito Saito
    • Journal Title

      Acta Neuropathologica Communications

      Volume: 11(1) Pages: 156

    • DOI

      10.1186/s40478-023-01645-3

    • Peer Reviewed / Open Access
  • [Journal Article] Thioester-Based Coupled Fluorogenic Assays in Microdevice for the Detection of Single-Molecule Enzyme Activities of Esterases with Specified Substrate Recognition2023

    • Author(s)
      Tatsuya Ukegawa、Toru Komatsu、Mayano Minoda、Takuya Matsumoto、Takumi Iwasaka、Tadahaya Mizuno、Ryo Tachibana、Shingo Sakamoto、Kenjiro Hanaoka、Hiroyuki Kusuhara、Kazufumi Honda、Rikiya Watanabe、Yasuteru Urano
    • Journal Title

      Advanced Science

      Volume: 11 Pages: -

    • DOI

      10.1002/advs.202306559

    • Peer Reviewed / Open Access
  • [Journal Article] Stable nuclear transformation methods for Euglena gracilis and its application to a related Euglenida2023

    • Author(s)
      Masami Nakazawa、Hiroko Andoh、Hiromi Tsujii、Katsumi Amada、Hitomi Okuno、Yusuke Gejima、Kumi Iizuka、Daiki Haruguchi、Moe Maruyama、Yuichiro Kashiyama、Mitsuhiro Ueda、Kazutaka Miyatake、Tatsuji Sakamoto
    • Journal Title

      Algal Research

      Volume: 75 Pages: 103292

    • DOI

      10.1016/j.algal.2023.103292

    • Peer Reviewed
  • [Journal Article] PHACES-like syndrome with TMEM260 compound heterozygous variants2023

    • Author(s)
      Yukiko Kuroda、Yoko Saito、Yumi Enomoto、Takuya Naruto、Jun Mitsui、Kenji Kurosawa
    • Journal Title

      American Journal of Medical Genetics Part A

      Volume: 191 Pages: 2215~2218

    • DOI

      10.1002/ajmg.a.63245

    • Peer Reviewed
  • [Journal Article] Cancer metabolism within tumor microenvironments2023

    • Author(s)
      Sho Aki、Ryuichi Nakahara、Keisuke Maeda、Tsuyoshi Osawa
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - General Subjects

      Volume: 1867 Pages: 130330

    • DOI

      10.1016/j.bbagen.2023.130330

    • Peer Reviewed / Open Access
  • [Journal Article] JTK: targeted diploid genome assembler2023

    • Author(s)
      Bansho Masutani、Yoshihiko Suzuki、Yuta Suzuki、Shinichi Morishita
    • Journal Title

      Bioinformatics

      Volume: 39 Pages: -

    • DOI

      10.1093/bioinformatics/btad398

    • Peer Reviewed / Open Access
  • [Journal Article] Decomposing mosaic tandem repeats accurately from long reads2023

    • Author(s)
      Bansho Masutani、Riki Kawahara、Shinichi Morishita
    • Journal Title

      Bioinformatics

      Volume: 39 Pages: -

    • DOI

      10.1093/bioinformatics/btad185

    • Peer Reviewed / Open Access
  • [Journal Article] Seq2Phase: language model-based accurate prediction of client proteins in liquid-liquid phase separation2023

    • Author(s)
      Kazuki Miyata、Wataru Iwasaki
    • Journal Title

      Bioinformatics Advances

      Volume: 4(1) Pages: vbad189

    • DOI

      10.1093/bioadv/vbad189

    • Peer Reviewed / Open Access
  • [Journal Article] Drug Discovery and Development of miRNA-Based Nucleotide Drugs for Gastrointestinal Cancer2023

    • Author(s)
      Hiromichi Sato、Tomoaki Hara、Sikun Meng、Yoshiko Tsuji、Yasuko Arao、Kazuki Sasaki、Norikatsu Miyoshi、Shogo Kobayashi、Yuichiro Doki、Hidetoshi Eguchi、Hideshi Ishii
    • Journal Title

      Biomedicines

      Volume: 11(8) Pages: 2235

    • DOI

      10.3390/biomedicines11082235

    • Peer Reviewed / Open Access
  • [Journal Article] Gross Chromosomal Rearrangement at Centromeres2023

    • Author(s)
      Ran Xu、Ziyi Pan、Takuro Nakagawa
    • Journal Title

      Biomolecules

      Volume: 14(1) Pages: 28

    • DOI

      10.3390/biom14010028

    • Peer Reviewed / Open Access
  • [Journal Article] Opposing Roles of FACT for Euchromatin and Heterochromatin in Yeast2023

    • Author(s)
      Shinya Takahata、Yota Murakami
    • Journal Title

      Biomolecules

      Volume: 13 Pages: 377

    • DOI

      10.3390/biom13020377

    • Peer Reviewed / Open Access
  • [Journal Article] Generation of Mouse Primitive Endoderm Stem Cells2023

    • Author(s)
      Yasuhide Ohinata、Atsunori Saraya、Haruhiko Koseki
    • Journal Title

      BIO-PROTOCOL

      Volume: 13(22) Pages: e4878

    • DOI

      10.21769/bioprotoc.4878

    • Peer Reviewed / Open Access
  • [Journal Article] A critical role of the periplasm in copper homeostasis in Gram-negative bacteria2023

    • Author(s)
      Jun-ichi Ishihara、Tomohiro Mekubo、Chikako Kusaka、Suguru Kondo、Ryotaro Oiko、Kensuke Igarashi、Hirofumi Aiba、Shu Ishikawa、Naotake Ogasawara、Taku Oshima、Hiroki Takahashi
    • Journal Title

      Biosystems

      Volume: 231 Pages: 104980

    • DOI

      10.1016/j.biosystems.2023.104980

    • Peer Reviewed / Open Access
  • [Journal Article] Genetic determinants of Biofilm formation of Helicobacter pylori using whole-genome sequencing2023

    • Author(s)
      Kartika Afrida Fauzia、Hafeza Aftab、Muhammad Miftahussurur、Langgeng Agung Waskito、Vo Phuoc Tuan、Ricky Indra Alfaray、Takashi Matsumoto、Michiyuki Yurugi、Phawinee Subsomwong、Evariste Tshibangu Kabamba、Junko Akada、Yoshio Yamaoka
    • Journal Title

      BMC Microbiology

      Volume: 23(1) Pages: 159

    • DOI

      10.1186/s12866-023-02889-8

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Microglia sense astrocyte dysfunction and prevent disease progression in an Alexander disease model2023

    • Author(s)
      Kozo Saito、Eiji Shigetomi、Youichi Shinozaki、Kenji Kobayashi、Bijay Parajuli、Yuto Kubota、Kent Sakai、Miho Miyakawa、Hiroshi Horiuchi、Junichi Nabekura、Schuichi Koizumi
    • Journal Title

      Brain

      Volume: - Pages: awad358

    • DOI

      10.1093/brain/awad358

    • Peer Reviewed / Open Access
  • [Journal Article] A practical assembly guideline for genomes with various levels of heterozygosity2023

    • Author(s)
      Takako Mochizuki、Mika Sakamoto、Yasuhiro Tanizawa、Takuro Nakayama、Goro Tanifuji、Ryoma Kamikawa、Yasukazu Nakamura
    • Journal Title

      Briefings in Bioinformatics

      Volume: 24(6) Pages: bbad337

    • DOI

      10.1093/bib/bbad337

    • Peer Reviewed / Open Access
  • [Journal Article] UNMF: a unified nonnegative matrix factorization for multi-dimensional omics data2023

    • Author(s)
      Ko Abe、Teppei Shimamura
    • Journal Title

      Briefings in Bioinformatics

      Volume: 24 Pages: -

    • DOI

      10.1093/bib/bbad253

    • Peer Reviewed / Open Access
  • [Journal Article] Recent trends in RNA informatics: a review of machine learning and deep learning for RNA secondary structure prediction and RNA drug discovery2023

    • Author(s)
      Kengo Sato、Michiaki Hamada
    • Journal Title

      Briefings in Bioinformatics

      Volume: 24 Pages: -

    • DOI

      10.1093/bib/bbad186

    • Peer Reviewed / Open Access
  • [Journal Article] Systematic analysis and characterization of long non-coding RNA genes in inflammatory bowel disease2023

    • Author(s)
      Rania Velissari、Mirolyuba Ilieva、James Dao、Henry E Miller、Jens Hedelund Madsen、Jan Gorodkin、Masanori Aikawa、Hideshi Ishii、Shizuka Uchida
    • Journal Title

      Briefings in Functional Genomics

      Volume: - Pages: elad044

    • DOI

      10.1093/bfgp/elad044

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Convergent genomic diversity and novel BCAA metabolism in intrahepatic cholangiocarcinoma2023

    • Author(s)
      Akihiro Kitagawa、Tsuyoshi Osawa、Miwa Noda、Yuta Kobayashi、Sho Aki、Yusuke Nakano、Tomoko Saito、Dai Shimizu、Hisateru Komatsu、Hideshi Ishii、Yutaka Suzuki、Satoru Miyano、Hiroyuki Aburatani、Yuichiro Doki、Hidetoshi Eguchi、Masaki Mori、Keiichi I. Nakayama、Teppei Shimamura、Tatsuhiro Shibata、Koshi Mimori et al.
    • Journal Title

      British Journal of Cancer

      Volume: - Pages: -

    • DOI

      10.1038/s41416-023-02256-4

    • Peer Reviewed / Open Access
  • [Journal Article] Subclonal accumulation of immune escape mechanisms in microsatellite instability-high colorectal cancers2023

    • Author(s)
      Yuta Kobayashi、Atsushi Niida、Satoshi Nagayama、Koichi Saeki、Hiroshi Haeno、Kazuki K. Takahashi、Shuto Hayashi、Yuki Ozato、Hideyuki Saito、Takanori Hasegawa、Hiromi Nakamura、Taro Tobo、Akihiro Kitagawa、Kuniaki Sato、Hidetoshi Eguchi、Masanobu Oshima、Yutaka Suzuki、Tatsuhiro Shibata、Koshi Mimori et al.
    • Journal Title

      British Journal of Cancer

      Volume: 129(7) Pages: 1105~1118

    • DOI

      10.1038/s41416-023-02395-8

    • Peer Reviewed / Open Access
  • [Journal Article] Cell fusion upregulates PD-L1 expression for evasion from immunosurveillance2023

    • Author(s)
      Youichi Tajima、Futoshi Shibasaki、Hisao Masai
    • Journal Title

      Cancer Gene Therapy

      Volume: 31 Pages: 158~173

    • DOI

      10.1038/s41417-023-00693-0

    • Peer Reviewed
  • [Journal Article] Multifaced roles of desmoplastic reaction and fibrosis in pancreatic cancer progression: Current understanding and future directions2023

    • Author(s)
      Hiromichi Sato、Tomoaki Hara、Sikun Meng、Yoshiko Tsuji、Yasuko Arao、Yoshiko Saito、Kazuki Sasaki、Shogo Kobayashi、Yuichiro Doki、Hidetoshi Eguchi、Hideshi Ishii
    • Journal Title

      Cancer Science

      Volume: 114(9) Pages: 3487~3495

    • DOI

      10.1111/cas.15890

    • Peer Reviewed / Open Access
  • [Journal Article] Study of Helicobacter pylori Isolated from a High-Gastric-Cancer-Risk Population: Unveiling the Comprehensive Analysis of Virulence-Associated Genes including Secretion Systems, and Genome-Wide Association Study2023

    • Author(s)
      Batsaikhan Saruuljavkhlan、Ricky Indra Alfaray、Khasag Oyuntsetseg、Boldbaatar Gantuya、Ayush Khangai、Namsrai Renchinsengee、Takashi Matsumoto、Junko Akada、Dashdorj Azzaya、Duger Davaadorj、Yoshio Yamaoka
    • Journal Title

      Cancers

      Volume: 15(18) Pages: 4528

    • DOI

      10.3390/cancers15184528

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] TM4SF1-AS1 inhibits apoptosis by promoting stress granule formation in cancer cells2023

    • Author(s)
      Hiroshi Kitajima、Reo Maruyama、Takeshi Niinuma、Eiichiro Yamamoto、Akira Takasawa、Kumi Takasawa、Kazuya Ishiguro、Akihiro Tsuyada、Ryo Suzuki、Gota Sudo、Toshiyuki Kubo、Kei Mitsuhashi、Masashi Idogawa、Kazuyoshi Yanagihara、Takashi Tokino、Makoto Osanai、Hiroshi Nakase、Hiromu Suzuki et al.
    • Journal Title

      Cell Death & Disease

      Volume: 14(7) Pages: 424

    • DOI

      10.1038/s41419-023-05953-3

    • Peer Reviewed / Open Access
  • [Journal Article] Atypical cell death and insufficient matrix organization in long-bone growth plates from Tric-b-knockout mice2023

    • Author(s)
      Atsuhiko Ichimura、Yuu Miyazaki、Hiroki Nagatomo、Takaaki Kawabe、Nobuhisa Nakajima、Ga Eun Kim、Masato Tomizawa、Naoki Okamoto、Shinji Komazaki、Sho Kakizawa、Miyuki Nishi、Hiroshi Takeshima
    • Journal Title

      Cell Death & Disease

      Volume: 14(12) Pages: 848

    • DOI

      10.1038/s41419-023-06285-y

    • Peer Reviewed / Open Access
  • [Journal Article] A single-nucleotide polymorphism in Helicobacter pylori promotes gastric cancer development2023

    • Author(s)
      Irshad Sharafutdinov、Nicole Tegtmeyer、Bodo Linz、Manfred Rohde、Michael Vieth、Alfred Chin-Yen Tay、Binit Lamichhane、Vo Phuoc Tuan、Kartika Afrida Fauzia、Heinrich Sticht、Yoshio Yamaoka、Barry J. Marshall、Steffen Backert
    • Journal Title

      Cell Host & Microbe

      Volume: 31(8) Pages: 1345~1358.e6

    • DOI

      10.1016/j.chom.2023.06.016

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Phase-separated nuclear bodies of nucleoporin fusions promote condensation of MLL1/CRM1 and rearrangement of 3D genome structure2023

    • Author(s)
      Masahiro Oka、Mayumi Otani、Yoichi Miyamoto、Rieko Oshima、Jun Adachi、Takeshi Tomonaga、Munehiro Asally、Yuya Nagaoka、Kaori Tanaka、Atsushi Toyoda、Kazuki Ichikawa、Shinichi Morishita、Kyoichi Isono、Haruhiko Koseki、Ryuichiro Nakato、Yasuyuki Ohkawa、Yoshihiro Yoneda
    • Journal Title

      Cell Reports

      Volume: 42(8) Pages: 112884

    • DOI

      10.1016/j.celrep.2023.112884

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Single-cell transcriptome atlas of Drosophila gastrula 2.02023

    • Author(s)
      Shunta Sakaguchi、Sonoko Mizuno、Yasushi Okochi、Chiharu Tanegashima、Osamu Nishimura、Tadashi Uemura、Mitsutaka Kadota、Honda Naoki、Takefumi Kondo
    • Journal Title

      Cell Reports

      Volume: 42(7) Pages: 112707

    • DOI

      10.1016/j.celrep.2023.112707

    • Peer Reviewed / Open Access
  • [Journal Article] Ecdysone signaling determines lateral polarity and remodels neurites to form Drosophila's left-right brain asymmetry2023

    • Author(s)
      So Sakamura、Fu-Yu Hsu、Akari Tsujita、Mohammed Bin Abubaker、Ann-Shyn Chiang、Kenji Matsuno
    • Journal Title

      Cell Reports

      Volume: 42 Pages: 112337

    • DOI

      10.1016/j.celrep.2023.112337

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Water-Soluble Gd(III)-Porphyrin Complexes Capable of Both Photosensitization and Relaxation Enhancement.2023

    • Author(s)
      Nemeth T、Yoshizawa-Sugata N、Pallier A、Tajima Y、Ma Y、Toth E、Masai H、Yamakoshi Y
    • Journal Title

      Chemical & Biomedical Imaging

      Volume: 1(2) Pages: 157~167

    • DOI

      10.1021/cbmi.3c00007

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Development of fluorogenic substrates for colorectal tumor-related neuropeptidases for activity-based diagnosis2023

    • Author(s)
      Norimichi Nagano、Yuki Ichihashi、Toru Komatsu、Hiroyuki Matsuzaki、Keisuke Hata、Toshiaki Watanabe、Yoshihiro Misawa、Misa Suzuki、Shingo Sakamoto、Yu Kagami、Ayumi Kashiro、Keiko Takeuchi、Yukihide Kanemitsu、Hiroki Ochiai、Rikiya Watanabe、Kazufumi Honda、Yasuteru Urano
    • Journal Title

      Chemical Science

      Volume: 14 Pages: 4495~4499

    • DOI

      10.1039/d2sc07029d

    • Peer Reviewed / Open Access
  • [Journal Article] Transposons contribute to the acquisition of cell type-specific cis-elements in the brain2023

    • Author(s)
      Kotaro Sekine、Masahiro Onoguchi、Michiaki Hamada
    • Journal Title

      Communications Biology

      Volume: 6(1) Pages: 631

    • DOI

      10.1038/s42003-023-04989-7

    • Peer Reviewed / Open Access
  • [Journal Article] Comparative pathogenicity of SARS-CoV-2 Omicron subvariants including BA.1, BA.2, and BA.52023

    • Author(s)
      Tomokazu Tamura、Daichi Yamasoba、Yoshitaka Oda、Jumpei Ito、Tomoko Kamasaki、Naganori Nao、Rina Hashimoto、Yoichiro Fujioka、Rigel Suzuki、Lei Wang、Hayato Ito、Yukie Kashima、Izumi Kimura、Maya Shofa、Kaori Tabata、Isao Yokota、Keita Matsuno、Kazuo Takayama、Shinya Tanaka、Kei Sato、Takasuke Fukuhara et al.
    • Journal Title

      Communications Biology

      Volume: 6(1) Pages: 772

    • DOI

      10.1038/s42003-023-05081-w

    • Peer Reviewed / Open Access
  • [Journal Article] Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs2023

    • Author(s)
      Hiroki Ban、Shinya Sato、Shinya Yoshikawa、Kazumasa Yamada、Yoji Nakamura、Mutsuo Ichinomiya、Naoki Sato、Romain Blanc-Mathieu、Hisashi Endo、Akira Kuwata、Hiroyuki Ogata
    • Journal Title

      Communications Biology

      Volume: 6(1) Pages: 697

    • DOI

      10.1038/s42003-023-05002-x

    • Peer Reviewed / Open Access
  • [Journal Article] Deletion of the autism-related gene Chd8 alters activity-dependent transcriptional responses in mouse postmitotic neurons2023

    • Author(s)
      Atsuki Kawamura、Masaaki Nishiyama
    • Journal Title

      Communications Biology

      Volume: 6(1) Pages: 593

    • DOI

      10.1038/s42003-023-04968-y

    • Peer Reviewed / Open Access
  • [Journal Article] Fission yeast Srr1 and Skb1 promote isochromosome formation at the centromere2023

    • Author(s)
      Piyusha Mongia、Naoko Toyofuku、Ziyi Pan、Ran Xu、Yakumo Kinoshita、Keitaro Oki、Hiroki Takahashi、Yoshitoshi Ogura、Tetsuya Hayashi、Takuro Nakagawa
    • Journal Title

      Communications Biology

      Volume: 6(1) Pages: 551

    • DOI

      10.1038/s42003-023-04925-9

    • Peer Reviewed / Open Access
  • [Journal Article] Topological data analysis of protein structure and inter/intra-molecular interaction changes attributable to amino acid mutations2023

    • Author(s)
      Jun Koseki、Shuto Hayashi、Yasuhiro Kojima、Haruka Hirose、Teppei Shimamura
    • Journal Title

      Computational and Structural Biotechnology Journal

      Volume: 21 Pages: 2950~2959

    • DOI

      10.1016/j.csbj.2023.05.009

    • Peer Reviewed / Open Access
  • [Journal Article] Control of stem cell behavior by CLE-JINGASA signaling in the shoot apical meristem in Marchantia polymorpha2023

    • Author(s)
      Go Takahashi、Tomohiro Kiyosue、Yuki Hirakawa
    • Journal Title

      Current Biology

      Volume: 33(23) Pages: 5121~5131.e6

    • DOI

      10.1016/j.cub.2023.10.054

    • Peer Reviewed
  • [Journal Article] Developing for nutrient uptake: Induced organogenesis in parasitic plants and root nodule symbiosis2023

    • Author(s)
      Songkui Cui、Shoko Inaba、Takuya Suzaki、Satoko Yoshida
    • Journal Title

      Current Opinion in Plant Biology

      Volume: 76 Pages: 102473

    • DOI

      10.1016/j.pbi.2023.102473

    • Peer Reviewed / Open Access
  • [Journal Article] Practical Compass of Single-Cell RNA-Seq Analysis2023

    • Author(s)
      Hiroyuki Okada、Ung-il Chung、Hironori Hojo
    • Journal Title

      Current Osteoporosis Reports

      Volume: - Pages: -

    • DOI

      10.1007/s11914-023-00840-4

    • Peer Reviewed / Open Access
  • [Journal Article] Transcriptionally active regions are highly limited in the nucleus of the plant sperm cell2023

    • Author(s)
      Mio K. Shibuta、Sachihiro Matsunaga
    • Journal Title

      CYTOLOGIA

      Volume: 88(3) Pages: 273~279

    • DOI

      10.1508/cytologia.88.273

    • Peer Reviewed / Open Access
  • [Journal Article] The dataset of de novo assembly and inferred functional annotation of the transcriptome of Heterosigma akashiwo, a bloom-forming, cosmopolitan raphidophyte2023

    • Author(s)
      Masanao Sato、Masahide Seki、Yutaka Suzuki、Shoko Ueki
    • Journal Title

      Data in Brief

      Volume: 48 Pages: 109071

    • DOI

      10.1016/j.dib.2023.109071

    • Peer Reviewed / Open Access
  • [Journal Article] regeneration factors expressed on myeloid expression in macrophage-like cells is required for tail regeneration in Xenopus laevis tadpoles2023

    • Author(s)
      Momoko Deguchi、Taro Fukazawa、Takeo Kubo
    • Journal Title

      Development

      Volume: 150(15) Pages: dev200467

    • DOI

      10.1242/dev.200467

    • Peer Reviewed / Open Access
  • [Journal Article] Partial male-to-female reprogramming of mouse fetal testis by sertoli cell ablation2023

    • Author(s)
      Kenya Imaimatsu、Ryuji Hiramatsu、Ayako Tomita、Hirotsugu Itabashi、Yoshiakira Kanai
    • Journal Title

      Development

      Volume: 150(14) Pages: dev201660

    • DOI

      10.1242/dev.201660

    • Peer Reviewed / Open Access
  • [Journal Article] Base-excision restriction enzymes: expanding the world of epigenetic immune systems2023

    • Author(s)
      Kenji K Kojima、Ichizo Kobayashi
    • Journal Title

      DNA Research

      Volume: - Pages: -

    • DOI

      10.1093/dnares/dsad009

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] ZSCAN4-binding motif-TGCACAC is conserved and enriched in CA/TG microsatellites in both mouse and human genomes2023

    • Author(s)
      Tomohiko Akiyama、Kei-ichiro Ishiguro、Nana Chikazawa、Shigeru B H Ko、Masashi Yukawa、Minoru S H Ko
    • Journal Title

      DNA Research

      Volume: 31 Pages: -

    • DOI

      10.1093/dnares/dsad029

    • Peer Reviewed / Open Access
  • [Journal Article] Metagenomic Thermometer2023

    • Author(s)
      Masaomi Kurokawa、Koichi Higashi、Keisuke Yoshida、Tomohiko Sato、Shigenori Maruyama、Hiroshi Mori、Ken Kurokawa
    • Journal Title

      DNA Research

      Volume: 30(6) Pages: dsad024

    • DOI

      10.1093/dnares/dsad024

    • Peer Reviewed / Open Access
  • [Journal Article] GINGER: an integrated method for high-accuracy prediction of gene structure in higher eukaryotes at the gene and exon level2023

    • Author(s)
      Takeaki Taniguchi、Miki Okuno、Takahiro Shinoda、Fumiya Kobayashi、Kazuki Takahashi、Hideaki Yuasa、Yuta Nakamura、Hiroyuki Tanaka、Rei Kajitani、Takehiko Itoh
    • Journal Title

      DNA Research

      Volume: 30(4) Pages: dsad017

    • DOI

      10.1093/dnares/dsad017

    • Peer Reviewed / Open Access
  • [Journal Article] Evolution of the viral genomes of SARS-CoV-2 in association with the changes in local condition: a genomic epidemiological study of a suburban city of Japan2023

    • Author(s)
      Yukie Kashima、Taketoshi Mizutani、Yuki Okimoto、Minami Maeda、Kaoru Musashino、Ryo-ichi Nishide、Akira Matsukura、Jison Nagase、Yutaka Suzuki
    • Journal Title

      DNA Research

      Volume: 30 Pages: -

    • DOI

      10.1093/dnares/dsad020

    • Peer Reviewed / Open Access
  • [Journal Article] canaper: Categorical analysis of neo- and paleo-endemism in R2023

    • Author(s)
      Joel H. Nitta、Shawn W. Laffan、Brent D. Mishler、Wataru Iwasaki
    • Journal Title

      Ecography

      Volume: 2023(9) Pages: e06638

    • DOI

      10.1111/ecog.06638

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The molecular clock in long-lived tropical trees is independent of growth rate2023

    • Author(s)
      Akiko Satake、Ryosuke Imai、Takeshi Fujino、Sou Tomimoto、Kayoko Ohta、Mohammad Naiem、Sapto Indrioko、 Widiyatno、Susilo Purnomo、Almudena Molla-Morales、Viktoria Nizhynska、Naoki Tani、Yoshihisa Suyama、Eriko Sasaki、Masahiro Kasahara
    • Journal Title

      eLife

      Volume: - Pages: -

    • DOI

      10.7554/elife.88456.1

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Truncated radial glia as a common precursor in the late corticogenesis of gyrencephalic mammals2023

    • Author(s)
      Merve Bilgic、Quan Wu、Taeko Suetsugu、Atsunori Shitamukai、Yuji Tsunekawa、Tomomi Shimogori、Mitsutaka Kadota、Osamu Nishimura、Shigehiro Kuraku、Hiroshi Kiyonari、Fumio Matsuzaki
    • Journal Title

      eLife

      Volume: - Pages: -

    • DOI

      10.7554/elife.91406.2

    • Peer Reviewed / Open Access
  • [Journal Article] Somatic mutation rates scale with time not growth rate in long-lived tropical trees2023

    • Author(s)
      Akiko Satake、Ryosuke Imai、Takeshi Fujino、Sou Tomimoto、Kayoko Ohta、Mohammad Na’iem、Sapto Indrioko、 Widiyatno、Susilo Purnomo、Almudena Molla-Morales、Viktoria Nizhynska、Naoki Tani、Yoshihisa Suyama、Eriko Sasaki、Masahiro Kasahara
    • Journal Title

      eLife

      Volume: - Pages: -

    • DOI

      10.7554/elife.88456.2

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Identification of key yeast species and microbe-microbe interactions impacting larval growth of Drosophila in the wild2023

    • Author(s)
      Ayumi Mure、Yuki Sugiura、Rae Maeda、Kohei Honda、Nozomu Sakurai、Yuuki Takahashi、Masayoshi Watada、Toshihiko Katoh、Aina Gotoh、Yasuhiro Gotoh、Itsuki Taniguchi、Keiji Nakamura、Tetsuya Hayashi、Takane Katayama、Tadashi Uemura、Yukako Hattori
    • Journal Title

      eLife

      Volume: 12 Pages: RP90148

    • DOI

      10.7554/elife.90148.3

    • Peer Reviewed / Open Access
  • [Journal Article] MultiBarcodeTools: Easy selection of optimal primers for eDNA multi-metabarcoding2023

    • Author(s)
      Tao Zhu、Wataru Iwasaki
    • Journal Title

      Environmental DNA

      Volume: 5 Pages: 1793~1808

    • DOI

      10.1002/edn3.499

    • Peer Reviewed / Open Access
  • [Journal Article] Characterisation of bacteria representing a novel Nitrosomonas clade: Physiology, genomics and distribution of missing ammonia oxidizer2023

    • Author(s)
      Shuta Kikuchi、Hirotsugu Fujitani、Kento Ishii、Rino Isshiki、Yuji Sekiguchi、Satoshi Tsuneda
    • Journal Title

      Environmental Microbiology Reports

      Volume: - Pages: 13158

    • DOI

      10.1111/1758-2229.13158

    • Peer Reviewed / Open Access
  • [Journal Article] DeepRaccess: high-speed RNA accessibility prediction using deep learning2023

    • Author(s)
      Kaisei Hara、Natsuki Iwano、Tsukasa Fukunaga、Michiaki Hamada
    • Journal Title

      Frontiers in Bioinformatics

      Volume: 3 Pages: 1275787

    • DOI

      10.3389/fbinf.2023.1275787

    • Peer Reviewed / Open Access
  • [Journal Article] Alternative splicing of a single exon causes a major impact on the affinity of Caenorhabditis elegans tropomyosin isoforms for actin filaments2023

    • Author(s)
      Shoichiro Ono、Eichi Watabe、Keita Morisaki、Kanako Ono、Hidehito Kuroyanagi
    • Journal Title

      Frontiers in Cell and Developmental Biology

      Volume: 11 Pages: 1208913

    • DOI

      10.3389/fcell.2023.1208913

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] R-loops in normal and malignant hematopoiesis2023

    • Author(s)
      Mayumi Hirayama、Satoru Shinriki、Hirotaka Matsui
    • Journal Title

      Frontiers in Hematology

      Volume: 2 Pages: -

    • DOI

      10.3389/frhem.2023.1297657

    • Peer Reviewed / Open Access
  • [Journal Article] Neural control of redox response and microbiota-triggered inflammation in Drosophila gut2023

    • Author(s)
      Naoyuki Fuse、Haruka Hashiba、Kentaro Ishibashi、Takuro Suzuki、Quang-Dat Nguyen、Kiho Fujii、Wakako Ikeda-Ohtsubo、Haruki Kitazawa、Hiromu Tanimoto、Shoichiro Kurata
    • Journal Title

      Frontiers in Immunology

      Volume: 14 Pages: 1268611

    • DOI

      10.3389/fimmu.2023.1268611

    • Peer Reviewed / Open Access
  • [Journal Article] Mathematical analysis identifies the optimal treatment strategy for epidermal growth factor receptor-mutated non-small cell lung cancer2023

    • Author(s)
      Qian Yu、Susumu S. Kobayashi、Hiroshi Haeno
    • Journal Title

      Frontiers in Oncology

      Volume: 13 Pages: -

    • DOI

      10.3389/fonc.2023.1137966

    • Peer Reviewed / Open Access
  • [Journal Article] Computational modeling of locoregional recurrence with spatial structure identifies tissue-specific carcinogenic profiles2023

    • Author(s)
      Sharafudeen Dahiru Abubakar、Mitsuaki Takaki、Hiroshi Haeno
    • Journal Title

      Frontiers in Oncology

      Volume: 13 Pages: 1116210

    • DOI

      10.3389/fonc.2023.1116210

    • Peer Reviewed / Open Access
  • [Journal Article] Biallelic disruption of DDX41 activity is associated with distinct genomic and immunophenotypic hallmarks in acute leukemia2023

    • Author(s)
      Anne Tierens、Elizabeth Kagotho、Satoru Shinriki、Andrew Seto、Adam C. Smith、Melanie Care、Dawn Maze、Hassan Sibai、Karen W. Yee、Andre C. Schuh、Dennis Dong Hwan Kim、Vikas Gupta、Mark D. Minden、Hirotaka Matsui、Jose-Mario Capo-Chichi
    • Journal Title

      Frontiers in Oncology

      Volume: 13 Pages: 1153082

    • DOI

      10.3389/fonc.2023.1153082

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] ABA signaling converts stem cell fate by substantiating a tradeoff between cell polarity, growth and cell cycle progression and abiotic stress responses in the moss Physcomitrium patens2023

    • Author(s)
      Marcel Pascal Beier、Chiyo Jinno、Natsumi Noda、Kohei Nakamura、Sumio Sugano、Yutaka Suzuki、Tomomichi Fujita
    • Journal Title

      Frontiers in Plant Science

      Volume: 14 Pages: 1303195

    • DOI

      10.3389/fpls.2023.1303195

    • Peer Reviewed / Open Access
  • [Journal Article] Ancient standing genetic variation facilitated the adaptive radiation of Lake Victoria cichlids2023

    • Author(s)
      Haruna Nakamura、Mitsuto Aibara、Masato Nikaido
    • Journal Title

      Genes & Genetic Systems

      Volume: 98 Pages: 93~99

    • DOI

      10.1266/ggs.23-00024

    • Peer Reviewed / Open Access
  • [Journal Article] Cdc7 kinase is required for postnatal brain development2023

    • Author(s)
      Karin Hori、Satoshi Yamazaki、Chiaki Ohtaka-Maruyama、Tomio Ono、Tomohiro Iguchi、Hisao Masai
    • Journal Title

      Genes to Cells

      Volume: 28 Pages: 679~693

    • DOI

      10.1111/gtc.13059

    • Peer Reviewed / Open Access
  • [Journal Article] GreenHill: a de novo chromosome-level scaffolding and phasing tool using Hi-C2023

    • Author(s)
      Shun Ouchi、Rei Kajitani、Takehiko Itoh
    • Journal Title

      Genome Biology

      Volume: 24(1) Pages: 162

    • DOI

      10.1186/s13059-023-03006-8

    • Peer Reviewed / Open Access
  • [Journal Article] Dosage compensation of Z sex chromosome genes in avian fibroblast cells2023

    • Author(s)
      Ruslan Deviatiiarov、Hiroki Nagai、Galym Ismagulov、Anastasia Stupina、Kazuhiro Wada、Shinji Ide、Noriyuki Toji、Heng Zhang、Woranop Sukparangsi、Sittipon Intarapat、Oleg Gusev、Guojun Sheng
    • Journal Title

      Genome Biology

      Volume: 24(1) Pages: 213

    • DOI

      10.1186/s13059-023-03055-z

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Extensive Copy Number Variation Explains Genome Size Variation in the Unicellular Zygnematophycean Alga, Closterium peracerosum-strigosum-littorale Complex2023

    • Author(s)
      Yawako W Kawaguchi、Yuki Tsuchikane、Keisuke Tanaka、Teruaki Taji、Yutaka Suzuki、Atsushi Toyoda、Motomi Ito、Yasuyuki Watano、Tomoaki Nishiyama、Hiroyuki Sekimoto、Takashi Tsuchimatsu
    • Journal Title

      Genome Biology and Evolution

      Volume: 15(8) Pages: evad115

    • DOI

      10.1093/gbe/evad115

    • Peer Reviewed / Open Access
  • [Journal Article] Chromosome-Scale Genome Assembly of the Freshwater Snail Semisulcospira habei from the Lake Biwa Drainage System2023

    • Author(s)
      Osamu Miura、Atsushi Toyoda、Tetsuya Sakurai
    • Journal Title

      Genome Biology and Evolution

      Volume: 15(11) Pages: evad208

    • DOI

      10.1093/gbe/evad208

    • Peer Reviewed / Open Access
  • [Journal Article] Metabolic advantages of regulatory T cells dictated by cancer cells2023

    • Author(s)
      Masaki Kondo、Shogo Kumagai、Hiroyoshi Nishikawa
    • Journal Title

      International Immunology

      Volume: - Pages: dxad035

    • DOI

      10.1093/intimm/dxad035

    • Peer Reviewed / Open Access
  • [Journal Article] Neural Isoforms of Agrin Are Generated by Reduced PTBP1-RNA Interaction Network Spanning the Neuron-Specific Splicing Regions in AGRN2023

    • Author(s)
      Samira Bushra、Ying-Ni Lin、Atefeh Joudaki、Mikako Ito、Bisei Ohkawara、Kinji Ohno、Akio Masuda
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 24(8) Pages: 7420

    • DOI

      10.3390/ijms24087420

    • Peer Reviewed / Open Access
  • [Journal Article] The Link of mRNA and rRNA Transcription by PUF60/FIR through TFIIH/P62 as a Novel Therapeutic Target for Cancer2023

    • Author(s)
      Kouichi Kitamura、Tyuji Hoshino、Atsushi Okabe、Masaki Fukuyo、Bahityar Rahmutulla、Nobuko Tanaka、Sohei Kobayashi、Tomoaki Tanaka、Takashi Shida、Mashiro Ueda、Toshinari Minamoto、Hisahiro Matsubara、Atsushi Kaneda、Hideshi Ishii、Kazuyuki Matsushita
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 24(24) Pages: 17341

    • DOI

      10.3390/ijms242417341

    • Peer Reviewed / Open Access
  • [Journal Article] NRF3 activates mTORC1 arginine-dependently for cancer cell viability2023

    • Author(s)
      Shuuhei Hirose、Tsuyoshi Waku、Misato Tani、Haruka Masuda、Keiko Endo、Sanae Ashitani、Iori Aketa、Hina Kitano、Sota Nakada、Ayaka Wada、Atsushi Hatanaka、Tsuyoshi Osawa、Tomoyoshi Soga、Akira Kobayashi
    • Journal Title

      iScience

      Volume: 26(2) Pages: 106045

    • DOI

      10.1016/j.isci.2023.106045

    • Peer Reviewed / Open Access
  • [Journal Article] Expanded male sex-determining region conserved during the evolution of homothallism in the green alga Volvox2023

    • Author(s)
      Kayoko Yamamoto、Ryo Matsuzaki、Wuttipong Mahakham、Wirawan Heman、Hiroyuki Sekimoto、Masanobu Kawachi、Yohei Minakuchi、Atsushi Toyoda、Hisayoshi Nozaki
    • Journal Title

      iScience

      Volume: 26 Pages: 106893

    • DOI

      10.1016/j.isci.2023.106893

    • Peer Reviewed / Open Access
  • [Journal Article] Downregulation of 15-PGDH enhances MASH-HCC development via fatty acid-induced T-cell exhaustion2023

    • Author(s)
      Xichen Hu、Tadahito Yasuda、Noriko Yasuda-Yosihara、Atsuko Yonemura、Terumasa Umemoto、Yutaka Nakachi、Kohei Yamashita、Takashi Semba、Kota Arima、Tomoyuki Uchihara、Takaichi Fukuda、Hayato Nakagawa、Koji Taniguchi、Yuji Miyamoto、Hideo Baba、Takatsugu Ishimoto et al.
    • Journal Title

      JHEP Reports

      Volume: 5(12) Pages: 100892

    • DOI

      10.1016/j.jhepr.2023.100892

    • Peer Reviewed / Open Access
  • [Journal Article] FXYD3 functionally demarcates an ancestral breast cancer stem cell subpopulation with features of drug-tolerant persisters2023

    • Author(s)
      Mengjiao Li、Tatsunori Nishimura、Yasuto Takeuchi、Tsunaki Hongu、Yuming Wang、Daisuke Shiokawa、Sumio Sugano、Teppei Shimamura、Akinori Kanai、Manami Katoh、Seitaro Nomura、Ryuichiro Nakato、Yutaka Suzuki、Arinobu Tojo、Dominic C. Voon、Seishi Ogawa、Koji Okamoto、Theodoros Foukakis、Noriko Gotoh et al.
    • Journal Title

      Journal of Clinical Investigation

      Volume: 133(22) Pages: e166666

    • DOI

      10.1172/jci166666

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Identification of small-sized intrachromosomal segments at the ends of INV-DUP-DEL patterns2023

    • Author(s)
      Keiko Shimojima Yamamoto、Takeaki Tamura、Nobuhiko Okamoto、Eriko Nishi、Atsuko Noguchi、Ikuko Takahashi、Yukio Sawaishi、Masaki Shimizu、Hitoshi Kanno、Yohei Minakuchi、Atsushi Toyoda、Toshiyuki Yamamoto
    • Journal Title

      Journal of Human Genetics

      Volume: 68 Pages: 751~757

    • DOI

      10.1038/s10038-023-01181-x

    • Peer Reviewed
  • [Journal Article] Transcriptome profile of subsynaptic myonuclei at the neuromuscular junction in embryogenesis2023

    • Author(s)
      Bisei Ohkawara、Masaomi Kurokawa、Akinori Kanai、Kiyomi Imamura、Guiying Chen、Ruchen Zhang、Akio Masuda、Koichi Higashi、Hiroshi Mori、Yutaka Suzuki、Ken Kurokawa、Kinji Ohno
    • Journal Title

      Journal of Neurochemistry

      Volume: 168 Pages: 342~354

    • DOI

      10.1111/jnc.16013

    • Peer Reviewed / Open Access
  • [Journal Article] Novel Estrogen Receptor Inhibitory Mechanism for Halogen-containing Endocrine-disrupting Chemicals Discovered by Computer Simulation2023

    • Author(s)
      Ayami Matsushima
    • Journal Title

      Journal of Synthetic Organic Chemistry, Japan(有機合成化学協会誌)

      Volume: 81 Pages: 1103~1109

    • DOI

      10.5059/yukigoseikyokaishi.81.1103

    • Peer Reviewed / Open Access
  • [Journal Article] A Fast and Easy Method to Co-extract DNA and RNA from an Environmental Microbial Sample2023

    • Author(s)
      Yusuke Okazaki、Tuyen Thi Nguyen、Arisa Nishihara、Hisashi Endo、Hiroyuki Ogata、Shin-ichi Nakano、Hideyuki Tamaki
    • Journal Title

      Microbes and Environments

      Volume: 38(1) Pages: ME22102

    • DOI

      10.1264/jsme2.me22102

    • Peer Reviewed / Open Access
  • [Journal Article] Transconjugant range of PromA plasmids in microbial communities is predicted by sequence similarity with the bacterial host chromosome2023

    • Author(s)
      Maho Tokuda、Masahiro Yuki、Moriya Ohkuma、Kazuhide Kimbara、Haruo Suzuki、Masaki Shintani
    • Journal Title

      Microbial Genomics

      Volume: 9(6) Pages: mgen001043

    • DOI

      10.1099/mgen.0.001043

    • Peer Reviewed / Open Access
  • [Journal Article] Complete genome sequences of 11 Streptococcus pneumoniae strains isolated from acute infectious purpura fulminans, sepsis, and pneumonia2023

    • Author(s)
      Takane Kikuchi-Ueda、Shintaro Maeno、Yasuhiro Gotoh、Yoshitoshi Ogura、Ryuichi Fujisaki、Tetsuya Hayashi
    • Journal Title

      Microbiology Resource Announcements

      Volume: - Pages: e0077323

    • DOI

      10.1128/mra.00773-23

    • Peer Reviewed / Open Access
  • [Journal Article] Complete genomes of mutualistic bacterial co-symbionts ”Candidatus Sulcia muelleri” and ”Candidatus Nasuia deltocephalinicola” of the rice green leafhopper Nephotettix cincticeps2023

    • Author(s)
      Minoru Moriyama、Yudai Nishide、Atsushi Toyoda、Takehiko Itoh、Takema Fukatsu
    • Journal Title

      Microbiology Resource Announcements

      Volume: 12(9) Pages: e0035323

    • DOI

      10.1128/mra.00353-23

    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence of the Thermophilic Enterococcus faecalis Strain K-4, Isolated from a Grass Silage in Thailand2023

    • Author(s)
      Meimi Kuwabara、Rei Irimajiri、Shun Togo、Yasuhiro Fujino、Masanori Honsho、Shiro Mawatari、Takehiko Fujino、Katsumi Doi
    • Journal Title

      Microbiology Resource Announcements

      Volume: 12 Pages: e0081422

    • DOI

      10.1128/mra.00814-22

    • Peer Reviewed / Open Access
  • [Journal Article] Advantages of Whole Genome Sequencing in Mitigating the Helicobacter pylori Antimicrobial Resistance Problem2023

    • Author(s)
      Kartika Afrida Fauzia、Ricky Indra Alfaray、Yoshio Yamaoka
    • Journal Title

      Microorganisms

      Volume: 11(5) Pages: 1239

    • DOI

      10.3390/microorganisms11051239

    • Peer Reviewed / Open Access
  • [Journal Article] Characterization of FLOWERING LOCUS C 5 in Brassica rapa L.2023

    • Author(s)
      Ayasha Akter、Tomohiro Kakizaki、Etsuko Itabashi、Kohei Kunita、Motoki Shimizu、Mst. Arjina Akter、Hasan Mehraj、Keiichi Okazaki、Elizabeth S. Dennis、Ryo Fujimoto
    • Journal Title

      Molecular Breeding

      Volume: 43(8) Pages: 58

    • DOI

      10.1007/s11032-023-01405-0

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Repositioning of centromere-associated repeats during karyotype evolution in Oryzias fishes2023

    • Author(s)
      Satoshi Ansai、Atsushi Toyoda、Kohta Yoshida、Jun Kitano
    • Journal Title

      Molecular Ecology

      Volume: - Pages: -

    • DOI

      10.1111/mec.17222

    • Peer Reviewed
  • [Journal Article] Long-Read Sequencing Resolves a Complex Structural Variant in PRKN Parkinson's Disease2023

    • Author(s)
      Kensuke Daida、Manabu Funayama、Kimberley J. Billingsley、Laksh Malik、Abigail Miano-Burkhardt、Hampton L. Leonard、Mary B. Makarious、Hirotaka Iwaki、Jinhui Ding、J. Raphael Gibbs、Kotaro Ogaki、Genko Oyama、Kenya Nishioka、Risa Nonaka、Wado Akamatsu、Cornelis Blauwendraat、Nobutaka Hattori et al.
    • Journal Title

      Movement Disorders

      Volume: 38(12) Pages: 2249~2257

    • DOI

      10.1002/mds.29610

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Bacteria can maintain rRNA operons solely on plasmids for hundreds of millions of years2023

    • Author(s)
      Mizue Anda、Shun Yamanouchi、Salvatore Cosentino、Mitsuo Sakamoto、Moriya Ohkuma、Masako Takashima、Atsushi Toyoda、Wataru Iwasaki
    • Journal Title

      Nature Communications

      Volume: 14(1) Pages: 7232

    • DOI

      10.1038/s41467-023-42681-w

    • Peer Reviewed / Open Access
  • [Journal Article] Whole-genome sequencing reveals the molecular implications of the stepwise progression of lung adenocarcinoma2023

    • Author(s)
      Yasuhiko Haga、Yoshitaka Sakamoto、Keiko Kajiya、Hitomi Kawai、Miho Oka、Noriko Motoi、Masayuki Shirasawa、Masaya Yotsukura、Shun-Ichi Watanabe、Miyuki Arai、Junko Zenkoh、Kouya Shiraishi、Masahide Seki、Akinori Kanai、Yasushi Yatabe、Yutaka Suzuki、Masayuki Noguchi、Takashi Kohno、Ayako Suzuki et al.
    • Journal Title

      Nature Communications

      Volume: 14(1) Pages: 8375

    • DOI

      10.1038/s41467-023-43732-y

    • Peer Reviewed / Open Access
  • [Journal Article] A landscape of complex tandem repeats within individual human genomes2023

    • Author(s)
      Kazuki Ichikawa、Riki Kawahara、Takeshi Asano、Shinichi Morishita
    • Journal Title

      Nature Communications

      Volume: 14(1) Pages: 5530

    • DOI

      10.1038/s41467-023-41262-1

    • Peer Reviewed / Open Access
  • [Journal Article] The Helicobacter pylori Genome Project: insights into H. pylori population structure from analysis of a worldwide collection of complete genomes2023

    • Author(s)
      Kaisa Thorell、Zilia Y Munoz-Ramirez、Difei Wang、Santiago Sandoval-Motta、Rajiv Boscolo Agostini、Silvia Ghirotto、Roberto C Torres、Naoki Osada、Masaki Fukuyo、Masanori Arita、Yoshio Yamaoka、Ichizo Kobayashi、Ikuo Uchiyama、Daniel Falush、M. Constanza Camargo、Charles S. Rabkin et al.
    • Journal Title

      Nature Communications

      Volume: 14(1) Pages: 8184

    • DOI

      10.1038/s41467-023-43562-y

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A unique sigma/anti-sigma system in the actinomycete Actinoplanes missouriensis2023

    • Author(s)
      Takeaki Tezuka、Kyota Mitsuyama、Risa Date、Yasuo Ohnishi
    • Journal Title

      Nature Communications

      Volume: 14(1) Pages: 8483

    • DOI

      10.1038/s41467-023-44291-y

    • Peer Reviewed / Open Access
  • [Journal Article] BRD9 determines the cell fate of hematopoietic stem cells by regulating chromatin state2023

    • Author(s)
      Muran Xiao、Shinji Kondo、Masaki Nomura、Shinichiro Kato、Koutarou Nishimura、Weijia Zang、Yifan Zhang、Tomohiro Akashi、Aaron Viny、Tsukasa Shigehiro、Akinori Kanai、Akihiko Yokoyama、Susumu Goyama、Hideki Noguchi、Stanley C. Lee、Atsushi Toyoda、Kunihiko Hinohara、Omar Abdel-Wahab、Daichi Inoue et al.
    • Journal Title

      Nature Communications

      Volume: 14(1) Pages: 8372

    • DOI

      10.1038/s41467-023-44081-6

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] FIGNL1 AAA ATPase remodels RAD51 and DMC1 filaments in pre-meiotic DNA replication and meiotic recombination2023

    • Author(s)
      Masaru Ito、Asako Furukohri、Kenichiro Matsuzaki、Yurika Fujita、Atsushi Toyoda、Akira Shinohara
    • Journal Title

      Nature Communications

      Volume: 14(1) Pages: 6857

    • DOI

      10.1038/s41467-023-42576-w

    • Peer Reviewed / Open Access
  • [Journal Article] HMGA2 directly mediates chromatin condensation in association with neuronal fate regulation2023

    • Author(s)
      Naohiro Kuwayama、Tomoya Kujirai、Yusuke Kishi、Rina Hirano、Kenta Echigoya、Lingyan Fang、Sugiko Watanabe、Mitsuyoshi Nakao、Yutaka Suzuki、Kei-ichiro Ishiguro、Hitoshi Kurumizaka、Yukiko Gotoh
    • Journal Title

      Nature Communications

      Volume: 14(1) Pages: 6420

    • DOI

      10.1038/s41467-023-42094-9

    • Peer Reviewed / Open Access
  • [Journal Article] A fungal sesquiterpene biosynthesis gene cluster critical for mutualist-pathogen transition in Colletotrichum tofieldiae2023

    • Author(s)
      Kei Hiruma、Seishiro Aoki、Junya Takino、Takeshi Higa、Yuniar Devi Utami、Akito Shiina、Masanori Okamoto、Masami Nakamura、Nanami Kawamura、Yoshihiro Ohmori、Ryohei Sugita、Keitaro Tanoi、Toyozo Sato、Hideaki Oikawa、Atsushi Minami、Wataru Iwasaki、Yusuke Saijo
    • Journal Title

      Nature Communications

      Volume: 14(1) Pages: 5288

    • DOI

      10.1038/s41467-023-40867-w

    • Peer Reviewed / Open Access
  • [Journal Article] ASPSCR1::TFE3 orchestrates the angiogenic program of alveolar soft part sarcoma2023

    • Author(s)
      Miwa Tanaka、Surachada Chuaychob、Mizuki Homme、Yukari Yamazaki、Ruyin Lyu、Kyoko Yamashita、Keisuke Ae、Seiichi Matsumoto、Kohei Kumegawa、Reo Maruyama、Wei Qu、Yohei Miyagi、Ryuji Yokokawa、Takuro Nakamura
    • Journal Title

      Nature Communications

      Volume: 14 Pages: -

    • DOI

      10.1038/s41467-023-37049-z

    • Peer Reviewed / Open Access
  • [Journal Article] Balanophora genomes display massively convergent evolution with other extreme holoparasites and provide novel insights into parasite-host interactions2023

    • Author(s)
      Xiaoli Chen、Dongming Fang、Yuxing Xu、Kunyu Duan、Satoko Yoshida、Shuai Yang、Sunil Kumar Sahu、Hui Fu、Xuanmin Guang、Min Liu、Chenyu Wu、Yang Liu、Weixue Mu、Yewen Chen、Yannan Fan、Fang Wang、Yuqing Bai、Zhong-Jian Liu、Qiaoshun Yan、Xin Liu、Xun Xu、Huanming Yang、Jianqiang Wu、Sean W. Graham、Huan Liu et al.
    • Journal Title

      Nature Plants

      Volume: 9 Pages: 1627~1642

    • DOI

      10.1038/s41477-023-01517-7

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] T2DB: A Web Database for Long Non-Coding RNA Genes in Type II Diabetes2023

    • Author(s)
      Rebecca Distefano、Mirolyuba Ilieva、Jens Hedelund Madsen、Hideshi Ishii、Masanori Aikawa、Sarah Rennie、Shizuka Uchida
    • Journal Title

      Non-Coding RNA

      Volume: 9(3) Pages: 30

    • DOI

      10.3390/ncrna9030030

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] An improved method for the highly specific detection of transcription start sites2023

    • Author(s)
      Masahide Seki、Yuta Kuze、Xiang Zhang、Ken-ichi Kurotani、Michitaka Notaguchi、Haruki Nishio、Hiroshi Kudoh、Takuya Suzaki、Satoko Yoshida、Sumio Sugano、Tomonao Matsushita、Yutaka Suzuki
    • Journal Title

      Nucleic Acids Research

      Volume: 52 Pages: e7~e7

    • DOI

      10.1093/nar/gkad1116

    • Peer Reviewed / Open Access
  • [Journal Article] Landscape of semi-extractable RNAs across five human cell lines2023

    • Author(s)
      Chao Zeng、Takeshi Chujo、Tetsuro Hirose、Michiaki Hamada
    • Journal Title

      Nucleic Acids Research

      Volume: 51(15) Pages: 7820~7831

    • DOI

      10.1093/nar/gkad567

    • Peer Reviewed
  • [Journal Article] Simultaneous measurement of nascent transcriptome and translatome using 4-thiouridine metabolic RNA labeling and translating ribosome affinity purification2023

    • Author(s)
      Hirotatsu Imai、Daisuke Utsumi、Hidetsugu Torihara、Kenzo Takahashi、Hidehito Kuroyanagi、Akio Yamashita
    • Journal Title

      Nucleic Acids Research

      Volume: 51(14) Pages: e76~e76

    • DOI

      10.1093/nar/gkad545

    • Peer Reviewed / Open Access
  • [Journal Article] Crucial role of iron in epigenetic rewriting during adipocyte differentiation mediated by JMJD1A and TET2 activity2023

    • Author(s)
      Tomohiro Suzuki、Tetsuro Komatsu、Hiroshi Shibata、Akiko Tanioka、Diana Vargas、Reika Kawabata-Iwakawa、Fumihito Miura、Shinnosuke Masuda、Mayuko Hayashi、Kyoko Tanimura-Inagaki、Tasuku Hirayama、Hiroshi Kimura、Juro Sakai、Hideko Nagasawa、Hideyuki Itabashi、Izuho Hatada、Takashi Ito、Takeshi Inagaki et al.
    • Journal Title

      Nucleic Acids Research

      Volume: 51(12) Pages: 6120~6142

    • DOI

      10.1093/nar/gkad342

    • Peer Reviewed / Open Access
  • [Journal Article] Role of RNA methylation in the regulation of pancreatic cancer stem cells (Review)2023

    • Author(s)
      Yoshiko Tsuji、Tomoaki Hara、Sikun Meng、Hiromichi Sato、Yasuko Arao、Ken Ofusa、Hideshi Ishii
    • Journal Title

      Oncology Letters

      Volume: 26(2) Pages: 336

    • DOI

      10.3892/ol.2023.13922

    • Peer Reviewed / Open Access
  • [Journal Article] Winding and Tangling. An Initial Phase of Membrane-Less Organelle Formation2023

    • Author(s)
      Hiroshi Maita、Shinichi Nakagawa
    • Journal Title

      Phase Separation in Living Cells

      Volume: - Pages: 111~131

    • DOI

      10.1007/978-981-99-4886-4_7

    • Peer Reviewed / Open Access
  • [Journal Article] A pyrenoid-localized protein SAGA1 is necessary for Ca2 -binding protein CAS-dependent expression of nuclear genes encoding inorganic carbon transporters in Chlamydomonas reinhardtii2023

    • Author(s)
      Daisuke Shimamura、Takashi Yamano、Yuki Niikawa、Donghui Hu、Hideya Fukuzawa
    • Journal Title

      Photosynthesis Research

      Volume: 156(2) Pages: 181~192

    • DOI

      10.1007/s11120-022-00996-7

    • Peer Reviewed
  • [Journal Article] Letter to the Editor: Genome Annotation MattersーFrom Genes to Phylogenetic Inferences2023

    • Author(s)
      Chihiro Furumizu、Yasuhiro Tanizawa、Yasukazu Nakamura
    • Journal Title

      Plant And Cell Physiology

      Volume: - Pages: pcad151

    • DOI

      10.1093/pcp/pcad151

    • Peer Reviewed
  • [Journal Article] Strigolactones in Rhizosphere Communication: Multiple Molecules With Diverse Functions2023

    • Author(s)
      Yee Jia Kee、Satoshi Ogawa、Yasunori Ichihashi、Ken Shirasu、Satoko Yoshida
    • Journal Title

      Plant And Cell Physiology

      Volume: 64(9) Pages: 955~966

    • DOI

      10.1093/pcp/pcad055

    • Peer Reviewed
  • [Journal Article] Harnessing Deep Learning to Analyze Cryptic Morphological Variability of Marchantia polymorpha2023

    • Author(s)
      Yoko Tomizawa、Naoki Minamino、Eita Shimokawa、Shogo Kawamura、Aino Komatsu、Takuma Hiwatashi、Ryuichi Nishihama、Takashi Ueda、Takayuki Kohchi、Yohei Kondo
    • Journal Title

      Plant And Cell Physiology

      Volume: 64(11) Pages: 1343~1355

    • DOI

      10.1093/pcp/pcad117

    • Peer Reviewed / Open Access
  • [Journal Article] Targeted A-to-G base editing in the organellar genomes of Arabidopsis with monomeric programmable deaminases2023

    • Author(s)
      Chang Zhou、Miki Okuno、Issei Nakazato、Nobuhiro Tsutsumi、Shin-ichi Arimura
    • Journal Title

      Plant Physiology

      Volume: - Pages: kiad678

    • DOI

      10.1093/plphys/kiad678

    • Peer Reviewed / Open Access
  • [Journal Article] A non-cell-autonomous circadian rhythm of bioluminescence reporter activities in individual duckweed cells2023

    • Author(s)
      Emiri Watanabe、Tomoaki Muranaka、Shunji Nakamura、Minako Isoda、Yu Horikawa、Tsuyoshi Aiso、Shogo Ito、Tokitaka Oyama
    • Journal Title

      Plant Physiology

      Volume: 193(1) Pages: 677~688

    • DOI

      10.1093/plphys/kiad218

    • Peer Reviewed
  • [Journal Article] Arabidopsis ASYMMETRIC LEAVES2 and Nucleolar Factors Are Coordinately Involved in the Perinucleolar Patterning of AS2 Bodies and Leaf Development2023

    • Author(s)
      Sayuri Ando、Mika Nomoto、Hidekazu Iwakawa、Simon Vial-Pradel、Lilan Luo、Michiko Sasabe、Iwai Ohbayashi、Kotaro T. Yamamoto、Yasuomi Tada、Munetaka Sugiyama、Yasunori Machida、Shoko Kojima、Chiyoko Machida
    • Journal Title

      Plants

      Volume: 12(20) Pages: 3621

    • DOI

      10.3390/plants12203621

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Functional impact of subunit composition and compensation on Drosophila melanogaster nicotinic receptors-targets of neonicotinoids2023

    • Author(s)
      Yuma Komori、Koichi Takayama、Naoki Okamoto、Masaki Kamiya、Wataru Koizumi、Makoto Ihara、Daitaro Misawa、Kotaro Kamiya、Yuto Yoshinari、Kazuki Seike、Shu Kondo、Hiromu Tanimoto、Ryusuke Niwa、David B. Sattelle、Kazuhiko Matsuda
    • Journal Title

      PLOS Genetics

      Volume: 19 Pages: e1010522

    • DOI

      10.1371/journal.pgen.1010522

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Nuclear DNA segments homologous to mitochondrial DNA are obstacles for detecting heteroplasmy in sugar beet (Beta vulgaris L.)2023

    • Author(s)
      Eigo Taniguchi、Kosuke Satoh、Megumi Ohkubo、Sachiyo Ue、Hiroaki Matsuhira、Yosuke Kuroda、Tomohiko Kubo、Kazuyoshi Kitazaki
    • Journal Title

      PLOS ONE

      Volume: 18(8) Pages: e0285430

    • DOI

      10.1371/journal.pone.0285430

    • Peer Reviewed / Open Access
  • [Journal Article] Bioinformatic and fine-scale chromosomal mapping reveal the nature and evolution of eliminated chromosomes in the Japanese hagfish, Eptatretus burgeri, through analysis of repetitive DNA families2023

    • Author(s)
      Kohei Nagao、Yoshiki Tanaka、Rei Kajitani、Atsushi Toyoda、Takehiko Itoh、Souichirou Kubota、Yuji Goto
    • Journal Title

      PLOS ONE

      Volume: 18 Pages: e0286941

    • DOI

      10.1371/journal.pone.0286941

    • Peer Reviewed / Open Access
  • [Journal Article] Acidic extracellular pH drives accumulation of N1-acetylspermidine and recruitment of protumor neutrophils2023

    • Author(s)
      Miki Kato、Keisuke Maeda、Ryuichi Nakahara、Haruka Hirose、Ayano Kondo、Sho Aki、Maki Sugaya、Sana Hibino、Miyuki Nishida、Manami Hasegawa、Hinano Morita、Ritsuko Ando、Rika Tsuchida、Minoru Yoshida、Tatsuhiko Kodama、Hideyuki Yanai、Teppei Shimamura、Tsuyoshi Osawa
    • Journal Title

      PNAS Nexus

      Volume: 2(10) Pages: pgad306

    • DOI

      10.1093/pnasnexus/pgad306

    • Peer Reviewed / Open Access
  • [Journal Article] Tumor cell-derived spermidine is an oncometabolite that suppresses TCR clustering for intratumoral CD8 T cell activation2023

    • Author(s)
      Sana Hibino、Shotaro Eto、Sho Hangai、Keiko Endo、Sanae Ashitani、Maki Sugaya、Tsuyoshi Osawa、Tomoyoshi Soga、Tadatsugu Taniguchi、Hideyuki Yanai
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 120(24) Pages: e2305245120

    • DOI

      10.1073/pnas.2305245120

    • Peer Reviewed / Open Access
  • [Journal Article] Small RNA-mediated silencing of phototropin suppresses the induction of photoprotection in the green alga Chlamydomonas reinhardtii2023

    • Author(s)
      Tomohito Yamasaki、Ryutaro Tokutsu、Haruhi Sawa、Nazifa Naziha Razali、Momoka Hayashi、Jun Minagawa
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 120 Pages: -

    • DOI

      10.1073/pnas.2302185120

    • Peer Reviewed / Open Access
  • [Journal Article] Spontaneous recurrence of a summer-like diel rhythm in the body temperature of the Syrian hamster after hibernation2023

    • Author(s)
      Satoshi Nakagawa、Yoshifumi Yamaguchi
    • Journal Title

      Proceedings of the Royal Society B: Biological Sciences

      Volume: 290(2009) Pages: 20230922

    • DOI

      10.1098/rspb.2023.0922

    • Peer Reviewed / Open Access
  • [Journal Article] AlphaCutter: Efficient removal of non-globular regions from predicted protein structures2023

    • Author(s)
      Chunlai Tam、Wataru Iwasaki
    • Journal Title

      PROTEOMICS

      Volume: 23(16) Pages: e2300176

    • DOI

      10.1002/pmic.202300176

    • Peer Reviewed / Open Access
  • [Journal Article] Comprehensive single-cell analysis demonstrates radiotherapy-induced infiltration of macrophages expressing immunosuppressive genes into tumor in esophageal squamous cell carcinoma2023

    • Author(s)
      Hidekazu Oyoshi、Junyan Du、Shunsuke A. Sakai、Riu Yamashita、Masayuki Okumura、Atsushi Motegi、Hidehiro Hojo、Masaki Nakamura、Hidenari Hirata、Hironori Sunakawa、Ayako Suzuki、Junko Zenkoh、Katsuya Tsuchihara、Tetsuo Akimoto、Atsushi Shibata、Yutaka Suzuki、Shun-Ichiro Kageyama et al.
    • Journal Title

      Science Advances

      Volume: 9(50) Pages: eadh9069

    • DOI

      10.1126/sciadv.adh9069

    • Peer Reviewed / Open Access
  • [Journal Article] Machine learning enables prediction of metabolic system evolution in bacteria2023

    • Author(s)
      Naoki Konno、Wataru Iwasaki
    • Journal Title

      Science Advances

      Volume: 9 Pages: -

    • DOI

      10.1126/sciadv.adc9130

    • Peer Reviewed / Open Access
  • [Journal Article] Condensed but liquid-like domain organization of active chromatin regions in living human cells2023

    • Author(s)
      Tadasu Nozaki、Soya Shinkai、Satoru Ide、Koichi Higashi、Sachiko Tamura、Masa A. Shimazoe、Masaki Nakagawa、Yutaka Suzuki、Yasushi Okada、Masaki Sasai、Shuichi Onami、Ken Kurokawa、Shiori Iida、Kazuhiro Maeshima
    • Journal Title

      Science Advances

      Volume: 9 Pages: -

    • DOI

      10.1126/sciadv.adf1488

    • Peer Reviewed / Open Access
  • [Journal Article] Quantitative trait loci for sex ratio in monoecious bitter gourd (Momordica charantia)2023

    • Author(s)
      Haru Karube、Shota Suzuki、Norimichi Miyagi、Naoki Taniai、Mayuko Miyake、Kazuhiko Tarora、Naoya Urasaki、Hideo Matsumura
    • Journal Title

      Scientia Horticulturae

      Volume: 321 Pages: 112330

    • DOI

      10.1016/j.scienta.2023.112330

    • Peer Reviewed
  • [Journal Article] Chromosomal-level assembly of Tokudaia osimensis, Tokudaia tokunoshimensis, and Tokudaia muenninki genomes2023

    • Author(s)
      Miki Okuno、Yuta Mochimaru、Kentaro Matsuoka、Takahiro Yamabe、Luisa Matiz-Ceron、Takamichi Jogahara、Atsushi Toyoda、Asato Kuroiwa、Takehiko Itoh
    • Journal Title

      Scientific Data

      Volume: 10(1) Pages: 927

    • DOI

      10.1038/s41597-023-02845-1

    • Peer Reviewed / Open Access
  • [Journal Article] Haplotype-resolved chromosomal-level assembly of wasabi (Eutrema japonicum) genome2023

    • Author(s)
      Hiroyuki Tanaka、Tatsuki Hori、Shohei Yamamoto、Atsushi Toyoda、Kentaro Yano、Kyoko Yamane、Takehiko Itoh
    • Journal Title

      Scientific Data

      Volume: 10(1) Pages: 441

    • DOI

      10.1038/s41597-023-02356-z

    • Peer Reviewed / Open Access
  • [Journal Article] Differences in the transcriptional immune response to Albugo candida between white rust resistant and susceptible cultivars in Brassica rapa L.2023

    • Author(s)
      Naomi Miyaji、Mst. Arjina Akter、Motoki Shimizu、Hasan Mehraj、Md Asad-Ud Doullah、Elizabeth S. Dennis、Izumi Chuma、Ryo Fujimoto
    • Journal Title

      Scientific Reports

      Volume: 13(1) Pages: 8599

    • DOI

      10.1038/s41598-023-35205-5

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Angiogenic and inflammatory responses in human induced microglia-like (iMG) cells from patients with Moyamoya disease2023

    • Author(s)
      Noritoshi Shirozu、Masahiro Ohgidani、Nobuhiro Hata、Shunya Tanaka、Shogo Inamine、Noriaki Sagata、Tetsuaki Kimura、Ituro Inoue、Koichi Arimura、Akira Nakamizo,Naoki Maehara、Soh Takagishi、Katsuma Iwaki、Tomohiro Nakao、Keiji Masuda、Yasunari Sakai、Masahiro Mizoguchi、Koji Yoshimoto、Takahiro A. Kato et al.
    • Journal Title

      Scientific Reports

      Volume: 13(1) Pages: 14842

    • DOI

      10.1038/s41598-023-41456-z

    • Peer Reviewed / Open Access
  • [Journal Article] Comparative genomics of two Vietnamese Helicobacter pylori strains, CHC155 from a non-cardia gastric cancer patient and VN1291 from a duodenal ulcer patient2023

    • Author(s)
      Bui Hoang Phuc、Vo Phuoc Tuan、Tran Thanh Binh、Pham Huu Tung、Tran Dinh Tri、Ho Dang Quy Dung、Ngo Phuong Minh Thuan、Kartika Afrida Fauzia、Evariste Tshibangu-Kabamba、Ricky Indra Alfaray、Batsaikhan Saruuljavkhlan、Takashi Matsumoto、Junko Akada、Yoshio Yamaoka
    • Journal Title

      Scientific Reports

      Volume: 13(1) Pages: 8869

    • DOI

      10.1038/s41598-023-35527-4

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] mRNA-based generation of marmoset PGCLCs capable of differentiation into gonocyte-like cells2023

    • Author(s)
      Musashi Kubiura-Ichimaru、Christopher Penfold、Kazuaki Kojima、Constance Dollet、Haruka Yabukami、Katsunori Semi、Yasuhiro Takashima、Thorsten Boroviak、Hideya Kawaji、Knut Woltjen、Aki Minoda、Erika Sasaki、Toshiaki Watanabe
    • Journal Title

      Stem Cell Reports

      Volume: 18 Pages: 1987~2002

    • DOI

      10.1016/j.stemcr.2023.08.006

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Hypoxia activates SREBP2 through Golgi disassembly in bone marrow-derived monocytes for enhanced tumor growth2023

    • Author(s)
      Ryuichi Nakahara、Sho Aki、Maki Sugaya、Haruka Hirose、Miki Kato、Keisuke Maeda、Daichi M Sakamoto、Yasuhiro Kojima、Miyuki Nishida、Ritsuko Ando、Juro Sakai、Tatsuhiko Kodama、Hiroyasu Kidoya、Teppei Shimamura、Tsuyoshi Osawa et al.
    • Journal Title

      The EMBO Journal

      Volume: 42(22) Pages: e114032

    • DOI

      10.15252/embj.2023114032

    • Peer Reviewed / Open Access
  • [Journal Article] Cellular senescence induction leads to progressive cell death via the INK4a-RB pathway in naked mole-rats2023

    • Author(s)
      Yoshimi Kawamura、Kaori Oka、Takashi Semba、Mayuko Takamori、Yuki Sugiura、Riyo Yamasaki、Yusuke Suzuki、Takeshi Chujo、Mari Nagase、Yuki Oiwa、Shusuke Fujioka、Sayuri Homma、Yuki Yamamura、Kazuhito Tomizawa、Makoto Suematsu、Takuya Yamamoto、Hidemasa Bono、Hideyuki Okano、Kyoko Miura et al.
    • Journal Title

      The EMBO Journal

      Volume: 42(16) Pages: e111133

    • DOI

      10.15252/embj.2022111133

    • Peer Reviewed / Open Access
  • [Journal Article] Nicotinamide-N-methyltransferase regulates lipid metabolism via SAM and 1-methylnicotinamide in the AML12 hepatocyte cell line2023

    • Author(s)
      Mayuko Yoda、Rin Mizuno、Yoshihiro Izumi、Masatomo Takahashi、Takeshi Bamba、Shinpei Kawaoka
    • Journal Title

      The Journal of Biochemistry

      Volume: - Pages: mvad028

    • DOI

      10.1093/jb/mvad028

    • Peer Reviewed / Open Access
  • [Journal Article] Rat deconvolution as knowledge miner for immune cell trafficking from toxicogenomics databases2023

    • Author(s)
      Katsuhisa Morita、Tadahaya Mizuno、Iori Azuma、Yutaka Suzuki、Hiroyuki Kusuhara
    • Journal Title

      Toxicological Sciences

      Volume: - Pages: kfad117

    • DOI

      10.1093/toxsci/kfad117

    • Peer Reviewed / Open Access
  • [Journal Article] Differential cardiomyocyte transcriptomic remodeling during in vitro Trypanosoma cruzi infection using laboratory strains provides implications on pathogenic host responses2023

    • Author(s)
      Katherine-Sofia Candray-Medina、Yu Nakagama、Masamichi Ito、Shun Nakagama、Evariste Tshibangu-Kabamba、Norihiko Takeda、Yuki Sugiura、Yuko Nitahara、Susana Pena、Yasuhiro Maejima、Issei Komuro、Junko Nakajima-Shimada、Yasutoshi Kido et al.
    • Journal Title

      Tropical Medicine and Health

      Volume: 51(1) Pages: 68

    • DOI

      10.1186/s41182-023-00552-6

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 日本犬とニホンオオカミの関係をゲノムから知る2023

    • Author(s)
      寺井 洋平
    • Journal Title

      BIOSTORY

      Volume: 40 Pages: 77~83

  • [Journal Article] 日本犬の成り立ちをゲノムから探る2023

    • Author(s)
      寺井 洋平
    • Journal Title

      Milsil : 自然と科学の情報誌

      Volume: 16(6) Pages: 6~8

  • [Journal Article] 生き物たちの不思議な関係(第4回)藻類(そうるい)の葉緑体を盗んで光合成!? ウミウシの1種 チドリミドリガイ2023

    • Author(s)
      前田 太郎
    • Journal Title

      Milsil : 自然と科学の情報誌

      Volume: 16(4) Pages: 26~29

  • [Journal Article] 性を自在にかえる:性転換魚の生殖腺の性的可塑性とシングルセルRNA-seq解析の試み2023

    • Author(s)
      太田 耕平、Tapas Chakraborty
    • Journal Title

      アグリバイオ

      Volume: 8(1) Pages: 69~74

  • [Journal Article] 分泌性ペプチド群によるストレス情報伝達の解明2023

    • Author(s)
      大谷 晴香、井上 和奏、高橋 史憲
    • Journal Title

      アグリバイオ

      Volume: 7(7) Pages: 39~43

  • [Journal Article] 浸透圧ストレス応答に関わる分泌性ペプチド群の機能解析2023

    • Author(s)
      大谷 晴香、井上 和奏、高橋 史憲
    • Journal Title

      アグリバイオ

      Volume: 7(14) Pages: 70~73

  • [Journal Article] ゲノム編集による花きの研究開発と今後の実用化への展望2023

    • Author(s)
      小野 道之
    • Journal Title

      アグリバイオ

      Volume: 7(13) Pages: 1115~1120

  • [Journal Article] ミジンコにおける性決定 RNA の多面的機能 セントロメアでの染色体異常の発生メカニズム2023

    • Author(s)
      中川 拓郎
    • Journal Title

      メディカルサイエンスダイジェスト

      Volume: 49(9) Pages: 64~66

  • [Journal Article] DDX41バリアント/変異による骨髄性造血器腫瘍の特徴と発症機序2023

    • Author(s)
      松井 啓隆、平山 真弓、神力 悟
    • Journal Title

      血液内科

      Volume: 86(4) Pages: 574~580

  • [Journal Article] 性転換魚の生殖腺における性的可塑性と生殖腺に潜む幹細胞2023

    • Author(s)
      太田 耕平、Tapas Chakraborty
    • Journal Title

      細胞

      Volume: 56(1) Pages: 38~42

  • [Journal Article] 性転換魚の生殖腺における性的可塑性とシングルセルRNA-seq解析の試み2023

    • Author(s)
      太田 耕平、Tapas Chakraborty
    • Journal Title

      細胞

      Volume: 55(7) Pages: 443~447

  • [Journal Article] 他生物の葉緑体で光合成をする軟体動物(特集 盗機能生物学)2023

    • Author(s)
      前田 太郎
    • Journal Title

      細胞

      Volume: 55(6) Pages: 364~367

  • [Journal Article] 変分自己符号化器を用いた細胞状態遷移のゆらぎ解析と未病研究への応用2023

    • Author(s)
      島村 徹平、小嶋 泰弘
    • Journal Title

      生体の科学

      Volume: 74(2) Pages: 118~122

    • DOI

      10.11477/mf.2425201655

  • [Presentation] A novel genetic system to visualize activated neurons during behaviors in the adult zebrafish2024

    • Author(s)
      Koichi Kawakami
    • Organizer
      2024 Asian Conference on Fish Models for Diseases
    • Int'l Joint Research / Invited
  • [Presentation] Freshwater Algae Bless Us with Exciting Insights into Biology2024

    • Author(s)
      Hisayoshi Nozaki
    • Organizer
      9th ASIAN PACIFIC PHYCOLOGICAL FORUM (APPF) 2024
    • Int'l Joint Research / Invited
  • [Presentation] Development of transposon-mediated genetic methods in zebrafish and their applications to study functional neural circuits2024

    • Author(s)
      Koichi Kawakami
    • Organizer
      Academic Symposium of the Genetics Medicine Convergence Association (Korea)
    • Int'l Joint Research / Invited
  • [Presentation] Tumor-informed frequent ctDNA monitoring confirms the clinical validity in advanced cancer therapy2024

    • Author(s)
      Nishizuka SS、Hiraki H、Yashima-Abo A、Sasaki T、Fujiwara R、Sasaki N、Inaba T、Sasaki T、Yaegashi M、Iwaya T
    • Organizer
      Circulating Nucleic Acids in Plasma and Serum (CNAPS2024)
    • Int'l Joint Research / Invited
  • [Presentation] Expansion of brain size and scaling in developmental time”. Conference for Indian Society for Developmental Biology2024

    • Author(s)
      Fumio Matsuzaki
    • Organizer
      Indian Society for Developmental Biology (InSDB)
    • Int'l Joint Research / Invited
  • [Presentation] The tripartite symbiosis which led the adaptation of Cladonia vulcani Savicz to an extreme environment.2024

    • Author(s)
      Mieko Kono
    • Organizer
      L-Insight & Multi-Level Network co-host EHUB Invitaion Seminar “Genome x Cells x Theory x Evolution
    • Int'l Joint Research / Invited
  • [Presentation] Transposon-mediated genetic methods in zebrafish and their applications to study functional neural circuits2024

    • Author(s)
      Koichi Kawakami
    • Organizer
      Special seminar at Academia Sinica (Taiwan)
    • Int'l Joint Research / Invited
  • [Presentation] Single cell spatial transcriptome analysis of LCNEC (Lung Cancer) using STOmics2024

    • Author(s)
      Akinori Kanai、Ryota Matsuoka、Daisuke Matsubara、Ayako Suzuki、Yutaka Suzuki
    • Organizer
      AGBT 2024
    • Int'l Joint Research
  • [Presentation] Single Cell Multi-omics analysis of PBMCs in healthy elderly individuals2024

    • Author(s)
      Yutaka Suzuki
    • Organizer
      AGBT 2024
    • Int'l Joint Research
  • [Presentation] Inclusive living subcellular sequencing spotlights physical physiological and human pathological features in osteoimmune diversity.2024

    • Author(s)
      Hiroyuki Okada、Yuta Terui、Asuka Terashima、Masahide Seki、Sanshiro Kanazawa、Francesca Gori、Taku Saito、Yutaka Suzuki、Roland Baron、Ung-il Chung、Sakae Tanaka、Hironori Hojo.
    • Organizer
      AGBT 2024
    • Int'l Joint Research
  • [Presentation] Development and optimization of the off-the-shelf digital PCR primer/probe library for ctDNA monitoring2024

    • Author(s)
      Hiraki H、Yashima-Abo A、Iwaya T、Nishizuka SS
    • Organizer
      Circulating Nucleic Acids in Plasma and Serum (CNAPS2024)
    • Int'l Joint Research
  • [Presentation] Inclusive living subcellular sequencing clarifies physical physiological and human pathological features in osteoimmune diversity.2024

    • Author(s)
      Okada H、Terui Y、Terashima A、Gori F、Suzuki Y、Baron R、Chung UI、Tanaka S、Hojo H.
    • Organizer
      Discover BMB 24
    • Int'l Joint Research
  • [Presentation] miRNAs secreted from the choroid plexus affect cognitive function by regulating neural stem cell behavior2024

    • Author(s)
      Sayako Katada、Yusuke Sakaki、Kinichi Nakashima
    • Organizer
      EMBO Workshop
    • Int'l Joint Research
  • [Presentation] Inclusive Living Subcellular Sequencing by iSCseq Rendering Physical, Physiological and Pathological Features in Osteoclast Diversity.2024

    • Author(s)
      H. Okada、Y. Terui、Y. Omata、M. Seki、S. Tani、A. Terashima、S. Kanazawa、M. Hosonuma、J. Miyahara、K. Makabe、S. Onodera、F. Yano、H. Kajiya、F. Gori、T. Saito、K. Okabe、Y. Suzuki、R. Baron、U. Chung、S. Tanaka、H. Hojo.
    • Organizer
      Gordon Research Conference “Bones and Teeth” 2024
    • Int'l Joint Research
  • [Presentation] Prediction of the transconjugants of plasmids from nucleotide sequences2024

    • Author(s)
      Maho Tokuda、Shunta Tsuruga、So Maeda、Rin Yamazaki、Chiho Suzuki-Minakuchi、Hideaki Nojiri、Kazuhide Kimbara、Masaki Shintani
    • Organizer
      International Symposium toward the Future of Advanced Researches in Shizuoka University (ISFAR-SU2024)
    • Int'l Joint Research
  • [Presentation] Genomic diversity of the pathogenic fungus Aspergillus fumigatus in Japan reveals the complex genomic basis of azole resistance2024

    • Author(s)
      高橋弘喜
    • Organizer
      The 10th Global Network Forum on Infection and Immunity
    • Int'l Joint Research
  • [Presentation] THA DYNAMICS OF STROMAL CELLS IN MYELOPROLIFERATIVE NEOPLASMS DURING THE MYELOFIBROSIS2024

    • Author(s)
      Nagaharu Keiki
    • Organizer
      The annual congress of European Hematology Association
    • Int'l Joint Research
  • [Presentation] 婦人科領域の分子病理学的知見を総括する2024

    • Author(s)
      前田大地
    • Organizer
      第104回日本病理学会近畿支部学術集会
    • Invited
  • [Presentation] 婦人科領域のゲノム科学2024

    • Author(s)
      前田大地
    • Organizer
      第10回宮崎県臨床細胞学会学術集会
    • Invited
  • [Presentation] 一細胞解像度の解析による悪性リンパ腫の微小環境2024

    • Author(s)
      坂田(柳元)麻実子
    • Organizer
      第113回日本病理学会総会
    • Invited
  • [Presentation] マウス胎子精巣における細胞特異的破壊を用いた性分化機構の解析2024

    • Author(s)
      今井松健也、平松竜司、富田絢子、板橋寛嗣、金井克晃
    • Organizer
      第129回日本解剖学会総会・全国学術集会
    • Invited
  • [Presentation] 脂肪細胞分化を調節する鉄依存性のエピゲノム制御2024

    • Author(s)
      稲垣 毅
    • Organizer
      第27回アディポサイエンス・シンポジウム
    • Invited
  • [Presentation] 酵素の機能進化から見た植物の香気成分多様性獲得機構2024

    • Author(s)
      肥塚崇男
    • Organizer
      第515回生存圏シンポジウム生存圏ミッションシンポジウム
    • Invited
  • [Presentation] 多面的な単一細胞解析による肺小細胞癌の本態解明の試み ~FFPE検体の活用へ~2024

    • Author(s)
      堀江真史
    • Organizer
      第64回日本呼吸器学会学術講演会
    • Invited
  • [Presentation] Identification of Key Yeast Species and Microbe-Microbe Interactions Impacting Larval Growth of Drosophila in the Wild2024

    • Author(s)
      服部 佑佳子
    • Organizer
      第71回日本生態学会大会
    • Invited
  • [Presentation] クサトベラの種子散布に関する果実二型が遺伝子流動に与える影響2024

    • Author(s)
      栄村奈緒子、古本良、村中智明、岩崎貴也、永野惇、傳田哲郎、内貴章世、梶田忠、本庄三恵、井鷺裕司、工藤洋
    • Organizer
      第71回日本生態学会大会
    • Invited
  • [Presentation] 個別化デジタルPCRによる超高感度腫瘍由来循環DNAモニタリング2024

    • Author(s)
      西塚 哲
    • Organizer
      第8回リキッドバイオプシー研究会
    • Invited
  • [Presentation] その診断あっていますか?―ctDNAモニタリングが変えるがん診療―2024

    • Author(s)
      岩谷 岳
    • Organizer
      第8回リキッドバイオプシー研究会
    • Invited
  • [Presentation] 地味なヤゴが色鮮やかなトンボになるメカニズム2024

    • Author(s)
      二橋亮
    • Organizer
      日本動物学会関東支部第76回大会
    • Invited
  • [Presentation] 胚発生を制御する多階層ダイナミクス2024

    • Author(s)
      近藤武史
    • Organizer
      日本動物学会北海道支部第599回支部講演会
    • Invited
  • [Presentation] 昆虫の化学調節とレジリエンス2024

    • Author(s)
      松田一彦
    • Organizer
      日本農芸化学会2024年度大会
    • Invited
  • [Presentation] トウガラシのRNA分解活性を制御するRNase MC-like遺伝子の同定2024

    • Author(s)
      山崎 彬、白澤健太、山田寛子、細川宗孝
    • Organizer
      園芸学会令和6年度春季大会
  • [Presentation] トウガラシの種間雑種にみられる座止に関するゲノム領域のターゲット配列解析2024

    • Author(s)
      白澤健太、細川宗孝
    • Organizer
      園芸学会令和6年度春季大会
  • [Presentation] Capsicum 種間交雑で生育異常を引き起こす C. annuum 側の候補遺伝子の特定2024

    • Author(s)
      岸麻理奈、白澤健太、倉田大地、山崎彬、細川宗孝
    • Organizer
      園芸学会令和6年度春季大会
  • [Presentation] 植物成長制御学の発展に向けた除草活性微生物に関する研究2024

    • Author(s)
      泉真隆、Phuong Khanh、Lai Khoa、宮崎翔、川出洋、岡崎伸
    • Organizer
      関東雑草研究会研究発表会
  • [Presentation] 糞便移植による高脂肪食誘発肥満マウスにおける大腸腫瘍への影響2024

    • Author(s)
      葉祥元
    • Organizer
      第110回日本消化器病学会総会
  • [Presentation] Analysis of Crohn’s disease specific intra-lymphatic epithelioid histiocytes: Their immunological characteristics and the association with clinicopathological findings.2024

    • Author(s)
      児玉 真
    • Organizer
      第113回日本病理学会総会
  • [Presentation] 鉄ニトリロ三酢酸誘発マウス腎発がん初期におけるゲノム内8-オキソグアニン分布2024

    • Author(s)
      赤塚慎也、豊國伸哉
    • Organizer
      第113回日本病理学会総会
  • [Presentation] 礼文島浜中2遺跡出土オホーツク文化前期人骨のゲノム解析2024

    • Author(s)
      佐藤丈寛 、久保大輔 、木村亮介 、米田穣 、加藤博文
    • Organizer
      第129回日本解剖学会総会・全国学術集会
  • [Presentation] 硬膜内リンパ管のリモデリングによる脳病態制御2024

    • Author(s)
      小西博之、木山博資
    • Organizer
      第129回日本解剖学会総会・全国学術集会
  • [Presentation] 病原真菌アスペルギルスフミガタスの遺伝系統の分布と薬剤耐性に関わる遺伝型解析2024

    • Author(s)
      He Xiaohui、楠屋陽子、萩原大祐、豊留孝仁、新居鉄平、Bian Cai、永山聖樹、柴田紗帆、渡邉哲、高橋弘喜
    • Organizer
      第18回日本ゲノム微生物学会年会
  • [Presentation] 抗酸化タンパク質セレノプロテインによる造血制御機構2024

    • Author(s)
      青山有美、山嵜博未、西村耕太郎、臧維嘉、小池優依、伊藤裕美、福本未記、高折晃史、井上大地.
    • Organizer
      第28回造血器腫瘍研究会
  • [Presentation] 造血器腫瘍における骨髄微小環境制御機構の解析2024

    • Author(s)
      林 康貴
    • Organizer
      第28回造血器腫瘍研究会
  • [Presentation] 免疫調節による造血幹細胞エイジング制御機構の解明2024

    • Author(s)
      田所優子
    • Organizer
      第28回造血器腫瘍研究会
  • [Presentation] ヌクレオポリン融合遺伝子産物の新たな機能2024

    • Author(s)
      岡正啓
    • Organizer
      第28回造血器腫瘍研究会
  • [Presentation] 臨床診断された痛風患者のみによる病型分類別のゲノムワイド関連解析と遺伝率2024

    • Author(s)
      松尾洋孝、豊田優、中杤昌弘、中山昌喜、河村優輔、清水聖子、中岡博史、若井建志、松尾恵太郎
    • Organizer
      第34回日本疫学会学術総会
  • [Presentation] 国内流行型G群レンサ球菌Streptococcus dysgalactiaeが有する遺伝子発現機構2024

    • Author(s)
      木ノ嶋航司、小倉康平、北村仁美、彼谷裕康、中村雅俊、岡本成史
    • Organizer
      第35回日本臨床微生物学会総会・学術集会
  • [Presentation] セントロメア領域の転写による染色体異常の発生2024

    • Author(s)
      中川 拓郎、Xu Ran、Tang Crystal
    • Organizer
      第41回染色体ワークショップ・第22回核ダイナミクス研究会
  • [Presentation] テトラヒメナの大規模DNA削減は 複数のHP1様タンパク質の協調的作用により制御される2024

    • Author(s)
      片岡研介、高橋弘喜、西本裕希、Olivera Valentirovic、吉村ゆり子、Eliot Geraud、中川 れい子、谷 直紀、豊田敦、望月 一史、中山 潤一
    • Organizer
      第41回染色体ワークショップ・第22回核ダイナミクス研究会
  • [Presentation] アーキアの染色体ドメイン形成機構2024

    • Author(s)
      竹俣直道
    • Organizer
      第41回染色体ワークショップ・第22回核ダイナミクス研究会
  • [Presentation] Physical and functional interaction among Irf8 enhancers during dendritic cell differentiation2024

    • Author(s)
      Takaya Yamasaki、Akira Nishiyama、Tomohiko Tamura
    • Organizer
      第52回日本免疫学会学術集会
  • [Presentation] Vitamin C treatment enhances the immune responses of CD8+ T cells by upregulation of Batf3.2024

    • Author(s)
      Kenta Kondo、Koji Terada、Yasutoshi Agata
    • Organizer
      第52回日本免疫学会学術集会
  • [Presentation] 肺オルガノイド空間的トランスクリプトーム解析による 次世代創薬プラットフォーム開発 -ニッチオーム介入評価系の新ツールとしての可能性-2024

    • Author(s)
      鈴木敏夫
    • Organizer
      第64回日本呼吸器学会学術講演会
  • [Presentation] CHH hypermethylation at 24PHAS loci during meiosis in rice male meiocytes2024

    • Author(s)
      Huong Ta、Taiji Kawakatsu、Atsushi Toyoda、Mutsuko Nakano、Ken-Ichi Nonomura
    • Organizer
      第65回日本植物生理学会年会
  • [Presentation] 紅藻と紅色系統二次共生藻におけるLHCIの多様化過程2024

    • Author(s)
      熊沢 穣、長尾 遼、高林 厚史、伊福 健太郎
    • Organizer
      第65回日本植物生理学会年会
  • [Presentation] iChIP, a screen method to isolate transcriptional complexes on a specific promoter in planta, identified novel regulatory factors of ABA biosynthesis2024

    • Author(s)
      Hikaru Sato
    • Organizer
      第65回日本植物生理学会年会
  • [Presentation] 幹細胞らしさの抑制に関わる遺伝子の解析2024

    • Author(s)
      槻木 竜二、池田 陽子、森 仁志、青柳 優太、平川 英樹
    • Organizer
      第65回日本植物生理学会年会
  • [Presentation] 盗葉緑体生物の比較オミクスによる 環境応答解析2024

    • Author(s)
      前田 太郎、森 大、永野 惇
    • Organizer
      第65回日本植物生理学会年会
  • [Presentation] シロイヌナズナASYMMETRIC LEAVES2 (AS2)タンパク質の細胞周期に依存した動態変化2024

    • Author(s)
      笹部美知子、鈴木啓子、山上楓、安藤沙友里、岩川秀和、小島晶子、町田泰則、町田千代子
    • Organizer
      第65回日本植物生理学会年会
  • [Presentation] 植物の新規シュート再生系に関与するクロマチンリモデリング因子の網羅的解析2024

    • Author(s)
      堀江綾香、坂本卓也、佐藤輝、乾弥生、鈴木穣、松永幸大
    • Organizer
      第65回日本植物生理学会年会
  • [Presentation] 乾燥ストレス応答に関わる 新規膜タンパク質の機能解析2024

    • Author(s)
      大谷晴香、井上和奏、鈴木健裕、堂前直、高橋史憲
    • Organizer
      第65回日本植物生理学会年会
  • [Presentation] 経時的遺伝子発現変化から理解する苔類ゼニゴケの胞子発芽過程2024

    • Author(s)
      酒井 友希、島津 舜治、近藤 侑貴、深城 英弘、石崎 公庸
    • Organizer
      第65回日本植物生理学会年会
  • [Presentation] 裸子植物ソテツ(Cycas revoluta)雄花の発熱における葉緑体/プラスチドの役割について2024

    • Author(s)
      久松萌々香、松岡史花、元木美南海、水野冬惟、佐藤光彦、稲葉丈人、稲葉靖子
    • Organizer
      第65回日本植物生理学会年会
  • [Presentation] 発熱性を持つ裸子植物ソテツ(Cycas revoluta)雄花由来ミトコンドリアを用いた比較プロテオーム解析2024

    • Author(s)
      松岡史花、久松萌々香、元木美南海、水野冬惟、佐藤光彦、稲葉丈人、稲葉靖子
    • Organizer
      第65回日本植物生理学会年会
  • [Presentation] 褐虫藻Breviolum minutum のcold shock domain containing proteinの配列特異的なDNA結合活性2024

    • Author(s)
      田中伶、吉原静恵
    • Organizer
      第65回日本植物生理学会年会
  • [Presentation] Analysis of gene expression patterns in the stem cell zone in Marchantia polymorpha2024

    • Author(s)
      Go Takahashi、Ryuichi Nishihama、Tomohiro Kiyosue、Yuki Hirakawa
    • Organizer
      第65回日本植物生理学会年会
  • [Presentation] コーヒー摂取の習慣は血清尿酸値とは相関せずに痛風リスクを減少させる:日欧の人種集団におけるメンデルランダム化解析より2024

    • Author(s)
      大西まなみ、白井雄也、野原悠希、中山昌喜、河村優輔、豊田優、染谷真澄、中杤昌弘、清水聖子、四ノ宮成祥、岡田随象、松尾洋孝
    • Organizer
      第69回防衛衛生学会
  • [Presentation] インドネシア・ポソ湖のメダカ属魚類における同所的種分化のゲノム基盤2024

    • Author(s)
      柿岡諒、安齋賢、田中理映子、佐藤正祐、北野潤、木村亮介、山平寿智
    • Organizer
      第71回日本生態学会大会
  • [Presentation] 個体群動態が語る適応放散 ―ニューカレドニアのシソ科 Oxera 属における種間比較―2024

    • Author(s)
      坂野慧悟、池田隆介、河合良弥、伊藤僚祐、野口英樹、寺内真、GILDAS GATEBLE、陶山佳久、井鷺裕司
    • Organizer
      第71回日本生態学会大会
  • [Presentation] 硬膜内リンパ管のリモデリングによる脳損傷部位からの細胞残骸排出2024

    • Author(s)
      小西博之
    • Organizer
      第7回包括的神経グリア研究会
  • [Presentation] ヒトがん高頻度変異を対象としたdPCRプライマー・プローブライブラリOTS-1000exの利用可能性と現状2024

    • Author(s)
      開 勇人、阿保亜紀子、岩谷 岳、西塚 哲
    • Organizer
      第8回リキッドバイオプシー研究会
  • [Presentation] 食道癌日常診療におけるCGP検査とctDNAモニタリング2024

    • Author(s)
      遠藤史隆、岩谷 岳、開 勇人、阿保亜紀子、板持広明、西塚 哲
    • Organizer
      第8回リキッドバイオプシー研究会
  • [Presentation] 経尿道的膀胱腫瘍切除術の周術期血漿circulating tumor DNAの動態2024

    • Author(s)
      阿部正和、開 勇人、田村大地、前川滋克、小原 航、西塚 哲
    • Organizer
      第8回リキッドバイオプシー研究会
  • [Presentation] 異質 4 倍体ワサビのゲノム解析2024

    • Author(s)
      田中 裕之、奈良 雅大、豊田 敦、山根 京子、伊藤 武彦
    • Organizer
      日本育種学会第145回講演会
  • [Presentation] オオムギ突然変異系統のエキソーム解析による出 穂期関連突然変異遺伝子の探索2024

    • Author(s)
      武田 尚馬、大熊 眞歩、伊吹 千尋、 Ajmal Mandozai、西村 和紗、門田 有希、加藤 鎌 司、西田 英隆
    • Organizer
      日本育種学会第145回講演会
  • [Presentation] イオン-遺伝子共発現解析を用いた野生イネ由来の低リン耐性機構の解明2024

    • Author(s)
      松永幸子、大森良弘、藤原徹
    • Organizer
      日本育種学会第145回講演会
  • [Presentation] 様々なヘテロ接合性レベルを持つゲノムで検証された実用的なアセンブリガイドライン2024

    • Author(s)
      望月 孝子、坂本 美佳、谷澤 靖洋、中山 卓郎、谷藤 吾朗、神川 龍馬、中村 保一
    • Organizer
      日本育種学会第145回講演会
  • [Presentation] ネバダオオシロアリの雌雄差を生み出す分子機構に関するゲノムワイドな解析2024

    • Author(s)
      藤原克斗、林良信、前川清人
    • Organizer
      日本昆虫学会第84回大会・第68回日本応用動物昆虫学会大会合同大会
  • [Presentation] クワガタムシ科におけるメス化遺伝子transformer の遺伝子重複2024

    • Author(s)
      大津 樹、近藤 颯人、千頭 康彦、道羅 英夫、後藤 寛貴
    • Organizer
      日本昆虫学会第84回大会・第68回日本応用動物昆虫学会大会合同大会
  • [Presentation] モンシロチョウ属シロチョウにおける食草適応に関わる遺伝子の進化とその発現調節2024

    • Author(s)
      岡村悠
    • Organizer
      日本昆虫学会第84回大会・第68回日本応用動物昆虫学会大会合同大会
  • [Presentation] ボルバキア感染アワノメイガ細胞のscMultiome解析2024

    • Author(s)
      松田(今井) 典子、室 智大、福井 崇弘、木内 隆史、豊田 敦、金井 昭教、鈴木 穣、伊藤 武彦、勝間 進
    • Organizer
      日本蚕糸学会第 94 回大会
  • [Presentation] 珪藻の進化・繁栄の謎を握る未知の藻類:パルマ藻の生物学2024

    • Author(s)
      桑田 晃、 伴広輝 、中村 洋路、山田和正、佐藤晋也、緒方博之、一宮睦雄
    • Organizer
      日本藻類学会第48回大会
  • [Presentation] ヒメミカヅキモBELL1遺伝子の有性生殖過程における機能2024

    • Author(s)
      專田 梨瑛子、加来 卓也、川井 絢子、西山 智明、関本 弘之、榊原 恵子
    • Organizer
      日本藻類学会第48回大会
  • [Presentation] 大腸菌の硫化水素応答性転写因子YgaVは内在性硫化水素合成に依存して鉄の取り込みを制御する2024

    • Author(s)
      野々山 翔太、前野 慎太朗、林 哲也、増田真二
    • Organizer
      日本農芸化学会2024年度大会
  • [Presentation] ヒト腸内細菌叢の大規模継代培養実験による微生物相互作用の解析2024

    • Author(s)
      前田 智也、吹谷 智、古澤 力
    • Organizer
      日本農芸化学会2024年度大会
  • [Presentation] ネオニコチノイドとの相互作用におけるショウジョウバエのDα4およびDβ3サブユニットの役割2024

    • Author(s)
      高山浩一、小森勇磨、伊原誠、David B. Sattelle、松田 一彦
    • Organizer
      日本農芸化学会2024年度大会
  • [Presentation] セイヨウミツバチのニコチン性アセチルコリン受容体の機能的発現と薬理特性に対する補助因子の効果2024

    • Author(s)
      伊原誠、高山浩一、伊藤稜、森澄海人、武林真由花、江川瑠夏、山本新菜、木村裕紀、松田 一彦
    • Organizer
      日本農芸化学会2024年度大会
  • [Presentation] 成長板におけるTric-b遺伝子欠損は非典型的な細胞死と不完全な細胞外基質構築を引き起こす2024

    • Author(s)
      長友 宏樹、市村 敦彦、川邊 隆彰、中嶋 将久、金 佳垠、竹島 浩
    • Organizer
      日本薬学会 第144年会(横浜)
  • [Presentation] 遺伝子発現情報を利用したブリ性拮抗選択の可視化2024

    • Author(s)
      小山喬、豊田敦、水野直樹、菊池潔
    • Organizer
      令和6年度日本水産学会春季大会
  • [Presentation] Deep generative models to reveal cellular level dynamics and communication2023

    • Author(s)
      島村徹平
    • Organizer
      10th International Congress on Industrial and Applied Mathematics(ICIAM2023)
    • Int'l Joint Research / Invited
  • [Presentation] High-resolution microbial eco-genomics in deep freshwater lakes2023

    • Author(s)
      Yusuke Okazaki
    • Organizer
      13th Asian Symposium on Microbial Ecology/36th Japanese Society of Microbial Ecology
    • Int'l Joint Research / Invited
  • [Presentation] Common mechanisms underlying the expansion of brain sizeand complexity in gyrencephalic mammals2023

    • Author(s)
      Fumio Matsuzaki
    • Organizer
      15th Annual Symposium of Singapore Stem Cell Society
    • Int'l Joint Research / Invited
  • [Presentation] Deciphering the cis-regulatory code of inflammatory dendritic cell differentiation2023

    • Author(s)
      Daisuke Kurotaki
    • Organizer
      26th IRCMS Symposium
    • Int'l Joint Research / Invited
  • [Presentation] Biological functions of G-quadruplexes in regulation of DNA replication2023

    • Author(s)
      Hisao Masai
    • Organizer
      50th International Symposium on Nucleic Acid Chemistry(ISNAC2023)
    • Int'l Joint Research / Invited
  • [Presentation] Examination of olfactory coral recognition of the predator, crown-of-thorns starfish using Y-maze tests2023

    • Author(s)
      Masumi Kamata、Takaya Kitamura、Tatsuki Koido、Takuma Mezaki、Yuki Hongo、Kodai Gibu、Nina Yasuda
    • Organizer
      5th Asia-Pacific Coral Reef Symposium (APCRs)
    • Int'l Joint Research / Invited
  • [Presentation] Transcription can drive DNA replication2023

    • Author(s)
      Hisao Masai
    • Organizer
      70 Years of DNA Double Helix: Celebration of Breakthroughs in Life Science
    • Int'l Joint Research / Invited
  • [Presentation] Sex chromosome turnover in the Sry-deficient mammal2023

    • Author(s)
      Asato Kuroiwa
    • Organizer
      8th Asia-Pacific Chromosome Colloquium
    • Int'l Joint Research / Invited
  • [Presentation] Recurrent translocation of a sex-determining region in pufferfishes underlying the rapid turnover of sex chromosomes2023

    • Author(s)
      Kiyoshi Kikuchi、Ahammad Kabir、Risa Ieda、Shiori Endo、and Sho Hosoya
    • Organizer
      9th International Conference of Brain and Gonadal Biology
    • Int'l Joint Research / Invited
  • [Presentation] Developing a target capturing method for long-read epigenome/transcriptome sequencing2023

    • Author(s)
      Yutaka Suzuki
    • Organizer
      Agilent Precision Oncology Summit 2023
    • Int'l Joint Research / Invited
  • [Presentation] Dermal stiffening causes epidermal stem cell dysfunction in aged skin.2023

    • Author(s)
      Fumiko Toyoshima
    • Organizer
      AMED International Symposium on Mechanobiology for Human Health.
    • Int'l Joint Research / Invited
  • [Presentation] Cooperation of Multiple HP1-like proteins ensures robust DNA elimination in Tetrahymena2023

    • Author(s)
      Kensuke Kataoka、Hiroki Takahashi、Yuki Nishimoto、Olivera Valentirovic、Yuriko Yoshimura、Eliot Geraud、Reiko Nakagawa、Naoki Tani、Hidetaka Koasako、Atsushi Toyoda、Kazufumi Mochizuki、Jun-ichi Nakayama
    • Organizer
      Ciliate Molecular Biology Meeting 2023
    • Int'l Joint Research / Invited
  • [Presentation] Chromatin structure in fission yeast spores2023

    • Author(s)
      Aki Hayashi、Reiko Nakagawa、Yasuyuki Ohkawa、Jun-ichi Nakayama
    • Organizer
      Cold Spring Harbor Asia Conference on YEAST AND LIFE SCIENCES
    • Int'l Joint Research / Invited
  • [Presentation] G4 binding and oligomerization activities of fission yeast Rif1protein are required for long-range regulation of origin firing.2023

    • Author(s)
      H. Masai、Y. Kanoh、D. Kohda、T. Sagi
    • Organizer
      Cold Spring Harbor Asia Conference on YEAST AND LIFE SCIENCES
    • Int'l Joint Research / Invited
  • [Presentation] From DNA replication to G-quadruplex: my long journey on science with my mentor, Ken-ichi Arai2023

    • Author(s)
      Hisao Masai
    • Organizer
      Cold Spring Harbor Meeting Asia on The Now and Future of RNA Therapeutics
    • Int'l Joint Research / Invited
  • [Presentation] Toward comprehensive understanding of neonicotinoid actions2023

    • Author(s)
      Kazuhiko Matsuda
    • Organizer
      Control of Human Disease Vectors, Pests and Parasites Meeting the challenges of resistance and sustainability (Cambridge, UK)
    • Int'l Joint Research / Invited
  • [Presentation] Comparative analysis of neocortical subplate using spatial transcriptomics2023

    • Author(s)
      丸山千秋
    • Organizer
      Cortical Evolution 2023
    • Int'l Joint Research / Invited
  • [Presentation] Association of Rif1 with nuclear membrane is essential for genome-wide replication timing regulation2023

    • Author(s)
      Tomohiro Iguchi、Sayuri Ito、Naoko Kakusho、Rino Fukatsu、Kenji Moriyama、Asako Sawano、Asami Oji、Mikihiro Shibata、Atsushi Miyawaki、Ichiro Hiratani、Hiroyuki Sasanuma and Hisao Masai
    • Organizer
      CSHL Meeting 2023 on Eukaryotic DNA Replication & Genome Maintenance
    • Int'l Joint Research / Invited
  • [Presentation] Kleptoplastic sea slug: Non-self chloroplast acquisition and absence of horizontal gene transfer2023

    • Author(s)
      Taro Maeda
    • Organizer
      EMBO | COB Workshop "Trans-Scale Biology" using exotic non-model organisms
    • Int'l Joint Research / Invited
  • [Presentation] Exploring the Genetic Basis of Horn development of the Japanese Rhinoceros Beetle, Trypoxylus dichotomus.2023

    • Author(s)
      Niimi T. and Morita S.
    • Organizer
      EMBO The Company of Biologists Workshop
    • Int'l Joint Research / Invited
  • [Presentation] Molecular basis of promoting centriole microtubule triplet assembly by the hydrolethalus syndrome protein HYLS-12023

    • Author(s)
      Daiju Kitagawa
    • Organizer
      EMBO Workshop Centrosomes in development, disease and evolution
    • Int'l Joint Research / Invited
  • [Presentation] Chromatin and the transcription factor IRF8 in the regulation of dendritic cell differentiation2023

    • Author(s)
      Tomohiko Tamura
    • Organizer
      EMDS2023@VIB conference
    • Int'l Joint Research / Invited
  • [Presentation] Tumor invasion initiates at Invasion Hotspots, an epithelial tissue-intrinsic microenvironment2023

    • Author(s)
      Yoichiro Tamori
    • Organizer
      Fly Bayou Symposium
    • Int'l Joint Research / Invited
  • [Presentation] Peopling History of East Eurasians and Kinship in the Neolithic Japanese Archipelago Based on Paleogenomics2023

    • Author(s)
      Hiroki Oota
    • Organizer
      Genes, genomes and identities: Japan in national and transnational perspectives
    • Int'l Joint Research / Invited
  • [Presentation] TURNOVER OF MAMMAL SEX CHROMOSOMES IN THE SRY-DEFICIENT SPECIES, AMAMI SPINY RAT2023

    • Author(s)
      Asato Kuroiwa
    • Organizer
      International Congress of Genetics and Genomics
    • Int'l Joint Research / Invited
  • [Presentation] Skin Remodeling During Life Stages2023

    • Author(s)
      Ryo Ichijo and Fumiko Toyoshima
    • Organizer
      International Symposium on Skin Stem Cell Dynamics.
    • Int'l Joint Research / Invited
  • [Presentation] 3D chromatin structure dynamics during dendritic cell differentiation and activation2023

    • Author(s)
      Daisuke Kurotaki
    • Organizer
      JAPAN-UK joint meeting in Tokyo
    • Int'l Joint Research / Invited
  • [Presentation] Fate determination mechanisms during cardiac development revealed by single-cell multiomics2023

    • Author(s)
      Akiyasu Iwase
    • Organizer
      Korea-Japan Blood and Vessel Symposium in Kumamoto
    • Int'l Joint Research / Invited
  • [Presentation] Modeling of skeletal development using human pluripotent stem cells and exploring the gene regulatory networks2023

    • Author(s)
      Hironori Hojo
    • Organizer
      KSBB2023
    • Int'l Joint Research / Invited
  • [Presentation] Spatial analysis of lung cancers reveals heterogeneity in tumor micro-environments2023

    • Author(s)
      Yutaka Suzuki
    • Organizer
      KSBMB International Conference 2023
    • Int'l Joint Research / Invited
  • [Presentation] Towards the understanding of horn development using Trypoxylus dichotomus as a model.2023

    • Author(s)
      Niimi T. and Morita S.
    • Organizer
      Non-Traditional Arthropod Model Systems
    • Int'l Joint Research / Invited
  • [Presentation] Search for factors that induce adipogenic differentiation of mesenchymal progenitor cell in skeletal muscle by spatial transcriptome analysis2023

    • Author(s)
      Tsuchiya K、Fujii W、Matsuwaki T、Yamanouchi K
    • Organizer
      NTU x UTokyo Joint Conference
    • Int'l Joint Research / Invited
  • [Presentation] Chromatin and the transcription factor IRF8 in the regulation of myeloid cell development2023

    • Author(s)
      Tomohiko Tamura
    • Organizer
      NUS-Kanagawa Cancer Symposium
    • Int'l Joint Research / Invited
  • [Presentation] Behaviors of plasmids in different natural environments2023

    • Author(s)
      Masaki Shintani
    • Organizer
      Power of Microbes in Industry and Environment 2023
    • Int'l Joint Research / Invited
  • [Presentation] Deciphering the Mechanisms of Cancer Development Driven by Aberrant Splicing Events2023

    • Author(s)
      井上大地
    • Organizer
      SECOND JCA-AACR PRECISION CANCER MEDICINE INTERNATIONAL CONFERENCE
    • Int'l Joint Research / Invited
  • [Presentation] Molecular phylogeny and function of the light-harvesting proteins in the diatom Chaetoceros gracilis2023

    • Author(s)
      Kentaro Ifuku
    • Organizer
      Taiwan-Japan Plant Biology 2023
    • Int'l Joint Research / Invited
  • [Presentation] Circadian-period variation underlies the local adaptation of photoperiodism2023

    • Author(s)
      Tomoaki Muranaka、Shogo Ito、Hiroshi Kudoh、Tokitaka Oyama
    • Organizer
      Taiwan-Japan Plant Biology 2023
    • Int'l Joint Research / Invited
  • [Presentation] Long-distance signaling under dehydration stress conditions2023

    • Author(s)
      Haruka Otani、Wakana Inoue、Jyunki Maeya、Takehiro Suzuki、Naoshi Dohmae、Kazuo Shinozaki、Fuminori Takahashi
    • Organizer
      Taiwan-Japan Plant Biology 2023
    • Int'l Joint Research / Invited
  • [Presentation] Regulation of replication timing and nuclear localization of chromatin by Fission yeast Rif1 protein2023

    • Author(s)
      Hisao Masai、Yutaka Kanoh、Daisuke Kohda、Tomoko Sagi
    • Organizer
      The 11th International Fission Yeast Meeting(POMBE2023)
    • Int'l Joint Research / Invited
  • [Presentation] Regulation of replication timing and DNA repair by nuclear membrane tethering of Rif12023

    • Author(s)
      Hisao Masai、Tomohiro Iguchi、Sayuri Ito、Mikhiko Shibata、Naoko Kakusho、Rino Fukatsu、Asami Oji、Ichiro Hiratani、Hiroyuki Sasanuma
    • Organizer
      The 14th International Symposium on DNA Damage Response & Human Disease (isDDRHD-2023)
    • Int'l Joint Research / Invited
  • [Presentation] Unveiling the Complex Microenvironment in Malignant Lymphoma: Insights from Single-Cell Analysis2023

    • Author(s)
      坂田(柳元)麻実子
    • Organizer
      The 14th International Workshop on Advanced Genomics
    • Int'l Joint Research / Invited
  • [Presentation] Haustorium induction signals in parasitic plants2023

    • Author(s)
      Satoko Yoshida
    • Organizer
      The 24th International Conference on Plant Growth Substances
    • Int'l Joint Research / Invited
  • [Presentation] Cancer Microenvironment of Colorectal Cancer2023

    • Author(s)
      三森功士
    • Organizer
      The 25th International Charles Heidelberger Symposium on Cancer Research Session 4. Precision Oncology
    • Int'l Joint Research / Invited
  • [Presentation] Mitigation of plant growth-defense trade-off through damage-associated Pep peptides and receptors under phosphate deficiency2023

    • Author(s)
      Natsuki Tsuchida、Masako Fuji、Shota Kido、Masahiro Nagayasu、Tae-Hong Lee、Taiga Ishihara、Kentaro Okada、Taishi Hirase、Asahi Adachi、Takumi Murakami、Masanao Sato、Miki Fujita、Yuri Tajima、Kei Hiruma、Shigetaka Yasuda、Yusuke Saijo
    • Organizer
      The 33rd International Conference on Arabidopsis Research (ICAR 2023)
    • Int'l Joint Research / Invited
  • [Presentation] Elevated LINE-1 retrotransposition in the brain and its potential implications for schizophrenia2023

    • Author(s)
      岩本和也
    • Organizer
      The 38th International Kumamoto Medical Bioscience Symposium
    • Int'l Joint Research / Invited
  • [Presentation] Function and evolution of subplate neurons(SpNs) in the formation of cortical neural circuits2023

    • Author(s)
      丸山千秋
    • Organizer
      The 38th International Kumamoto Medical Bioscience Symposium
    • Int'l Joint Research / Invited
  • [Presentation] Interspecific hybridization between Samia ricini and Samia cynthia is a new model system for molecular genetics2023

    • Author(s)
      Toru Shimada and Jung Lee
    • Organizer
      The 7th Asia-Pacific Congress of Sericulture and Insect Biotechnology (APSERI)
    • Int'l Joint Research / Invited
  • [Presentation] Whole Genome Sequencing Analysis for Understanding Next Generation Effects of Radiation Exposure2023

    • Author(s)
      Arikuni Uchimura
    • Organizer
      The 7th International Symposium on the Systems of Radiological Protection(ICRP2023)
    • Int'l Joint Research / Invited
  • [Presentation] A multidisciplinary challenge to assess the next-generation risks of low-dose-rate long-term gamma-ray exposure by whole-genome sequencing in the mouse model.2023

    • Author(s)
      Gondo Y、Uchimura A、Yoneya M、Tanaka S、Komura J、Kimura M、Ohno M、Toki H、Bando M、Tsunoyama Y、Matsumoto Y、Maki H、Shimada Y
    • Organizer
      The 7th International Symposium on the Systems of Radiological Protection(ICRP2023)
    • Int'l Joint Research / Invited
  • [Presentation] Advancements in Nucleotide Sequencing and Genome Analysis2023

    • Author(s)
      Yasukazu Nakamura
    • Organizer
      The 8th Big Data Forum for Life and Health Sciences
    • Int'l Joint Research / Invited
  • [Presentation] Computational modeling of colorectal cancer initiation and recurrence based on public recurrence data2023

    • Author(s)
      Hiroshi Haeno
    • Organizer
      The 8th China-India-Japan-Korea Conference
    • Int'l Joint Research / Invited
  • [Presentation] DDX41 coordinates transcriptional elongation and RNA splicing2023

    • Author(s)
      松井啓隆
    • Organizer
      Tsuruoka Conference 2023
    • Int'l Joint Research / Invited
  • [Presentation] The roles of phase-separated nuclear bodies of nucleoporin-fusions2023

    • Author(s)
      Masahiro Oka
    • Organizer
      Tsuruoka Conference 2023
    • Int'l Joint Research / Invited
  • [Presentation] Spatial analysis of lung cancers reveals heterogeneity in tumor micro-environments2023

    • Author(s)
      Yutaka Suzuki
    • Organizer
      WEHI Spatial Technology Symposium
    • Int'l Joint Research / Invited
  • [Presentation] Transformation, whole genome, mating-type determination, and RWP-RK genes in the heterothallic Closterium peracerosum-strigosum-littorale complex, a new model streptophyte alga2023

    • Author(s)
      Sekimoto H.
    • Organizer
      Workshop in Streptophyte Algae
    • Int'l Joint Research / Invited
  • [Presentation] FXYD3 functionally demarcates an ancestral cancer stem cell subpopulation with features of drug tolerant persisters2023

    • Author(s)
      後藤典子
    • Organizer
      第18回生命医科学研究所ネットワーク国際シンポジウム
    • Int'l Joint Research / Invited
  • [Presentation] Heterogenous breast cancer stem cells sustain in primary and metastatic cancer stem cell niches2023

    • Author(s)
      後藤典子
    • Organizer
      第41回札幌がん国際シンポジウム
    • Int'l Joint Research / Invited
  • [Presentation] The molecular mechanisms underlying the expansion of the primate subplate layer during the evolution of the cerebral cortex2023

    • Author(s)
      丸山千秋
    • Organizer
      第53回北米神経科学会大会
    • Int'l Joint Research / Invited
  • [Presentation] Analysis of stem cell-promoting CLE peptide signaling2023

    • Author(s)
      Yuki Hirakawa、Go Takahashi、Tomohiro Kiyosue
    • Organizer
      11th Plant Peptides and Receptors Meeting
    • Int'l Joint Research
  • [Presentation] Functional analysis of target genes of MpCLE2 signaling in the stem cell zone of Marchantia polymorpha2023

    • Author(s)
      Go Takahashi、Tomohiro Kiyosue、Yuki Hirakawa
    • Organizer
      11th Plant Peptides and Receptors Meeting
    • Int'l Joint Research
  • [Presentation] Determining phenotypic diversity and domestication of ornamental medaka strains via whole-genome resequencing2023

    • Author(s)
      Yoshihiro Omori
    • Organizer
      12th European Zebrafish Meeting
    • Int'l Joint Research
  • [Presentation] Metagenomic characterization of novel electroactive microorganisms enriched from stibnite mine wastewater2023

    • Author(s)
      Hamamura N.、Kashima H.、Mitsunobu S.
    • Organizer
      13th Asian Symposium on Microbial Ecology/36th Japanese Society of Microbial Ecology
    • Int'l Joint Research
  • [Presentation] Explore of differentially expressed genes in seeds with different dormancy in barley: Bioinformatic analysis using RNA-seq data2023

    • Author(s)
      Yuta Aoyagi、Hideki Hirakawa、Youko Oono、Shingo Nakamura
    • Organizer
      15th International Symposium on Pre-Harvest Sprouting in Cereals
    • Int'l Joint Research
  • [Presentation] Unraveling the Mechanisms of Kidney Regeneration through Damage-Response/Regeneration Enhancers2023

    • Author(s)
      Ochi H.、Suzuki N
    • Organizer
      19th International Xenopus Conference
    • Int'l Joint Research
  • [Presentation] Copy number variations and fusion genes in driver mutation-negative melanoma2023

    • Author(s)
      Hida T、Idogawa M、Kato J、Horimoto K、Sato S、Kiniwa Y、Sugita S、Okura M、Okuyama R、Tokino T、Uhara H
    • Organizer
      25th International Pigment Cell Conference
    • Int'l Joint Research
  • [Presentation] Mutation landscape of melanomas among Japanese: Custom panel sequencing of 77 cases2023

    • Author(s)
      Hida T、Idogawa M、Kato J、Horimoto K、Sato S、Kiniwa Y、Okura M、Okuyama R、Tokino T、Uhara H
    • Organizer
      25th World Congress of Dermatology
    • Int'l Joint Research
  • [Presentation] Distinct Minor Neoplastic Follicular T-Cell Subsets Dictate Lymphoma Fates through Functional Specialization2023

    • Author(s)
      安部佳亮
    • Organizer
      65th ASH Annual Meeting and Exposition
    • Int'l Joint Research
  • [Presentation] Toward the elucidation of the XY/ZW chromosome turnover mechanism in the Japanese winkled frogs (Glandirana gurosa)2023

    • Author(s)
      Yukako Katsura
    • Organizer
      9th International Symposium on the Biology of Vertebrate Sex Determination 2023
    • Int'l Joint Research
  • [Presentation] Shark and ray reproduction dissected with comparative DNA informatics2023

    • Author(s)
      Shigehiro Kuraku、Kazuaki Yamaguchi、Taiki Niwa、Yuta Ohishi、Osamu Nishimura、Mitsutaka Kadota、and Yoshinobu Uno
    • Organizer
      9th International Symposium on the Biology of Vertebrate Sex Determination 2023
    • Int'l Joint Research
  • [Presentation] Identification of m3C modification sites within mRNAs of pancreatic cancer cells by long-read direct RNA sequencing2023

    • Author(s)
      Shuhei Mitsutomi、Anzu Sugawara、Kenji Takahashi、Yusuke Mizukami、Nobuyoshi Akimitsu、Kenzui Taniue
    • Organizer
      AACR special conference in cancer research: translating cancer evolution and data science: the next frontier
    • Int'l Joint Research
  • [Presentation] The clinical validity of urinary pellet DNA monitoring of recurrent bladder cancer2023

    • Author(s)
      Abe M、Hiraki H、Tsuyukubo T、Ono S、Maekawa S、Tamura D、Ikarashi D、Kato R、Matsuura T、Kanehira M、Takata R、Fujisawa H、Iwaya T
    • Organizer
      American Association for Cancer Research Annual Meeting
    • Int'l Joint Research
  • [Presentation] A digital-PCR primer/probe library for pan-cancer ctDNA monitoring established from public databases for somatic mutations2023

    • Author(s)
      Hiraki H、Yashima-Abo A、Iwaya T、Nishizuka SS
    • Organizer
      American Association for Cancer Research Annual Meeting
    • Int'l Joint Research
  • [Presentation] An introduction of a highly sensitive circulating tumor DNA monitoring system for minimal residual disease detection using a library of 1000 digital PCR probes2023

    • Author(s)
      Nishizuka SS、Hiraki H、Abe M、Yashima-Abo A、Iwaya T
    • Organizer
      American Association for Cancer Research Annual Meeting
    • Int'l Joint Research
  • [Presentation] Interventional and integrative subcellular sequencing (i2scseq) clarifies the multi differentiation stages embedded inside mature osteoclast2023

    • Author(s)
      Hiroyuki Okada、Yuta Terui 、Yasunori Omata、Masahide Seki、Shoichiro Tani、Junya Miyahara、Kenta Makabe、Asuka Terashima、Sanshiro Kanazawa、Masahiro Hosonuma、Shoko Onodera、Fumiko Yano、Hiroshi Kajiya、Taku Saito、Yutaka Suzuki、Koji Okabe、Roland Baron、Sakae Tanaka、Ung-il Chung、Hironori Hojo
    • Organizer
      ASBMR 2023
    • Int'l Joint Research
  • [Presentation] Comprehensive genomic analysis of helicobacter pylori in highand low gastric cancer risk populations2023

    • Author(s)
      Saruuljavkhlan Batsaikhan、Yoshio Yamaoka
    • Organizer
      Asian Pacific Digestive Week 2023 (APDW 2023)
    • Int'l Joint Research
  • [Presentation] The features of IncP/P-1 plasmid would be predicted by k-mer compositions2023

    • Author(s)
      Maho Tokuda、Honoka Umeki、Haruhi Kamijo、Shunta Tsuruga、Haruo Suzuki、Masahiro Yuki、Moriya Ohkuma、Kazuhide Kimbara、Masaki Shintani
    • Organizer
      Bageco2023
    • Int'l Joint Research
  • [Presentation] Pseudomonas plasmids revisited: new insights and comprehensive analysis of their features for horizontal gene transfer2023

    • Author(s)
      Masaki Shintani、Haruo Suzuki、Hideaki Nojiri、Masato Suzuki
    • Organizer
      Bageco2023
    • Int'l Joint Research
  • [Presentation] Transcriptional Restart Causes Chromosomal Rearrangements at the Centromere2023

    • Author(s)
      Takuro Nakagawa
    • Organizer
      Celebrating 32 Years of Ludwig San Diego: Insights into Genome Integrity and Regulation in Cancer
    • Int'l Joint Research
  • [Presentation] Subcellular sequencing connects transcriptomics with physical and physiological findings.2023

    • Author(s)
      H. Okada、Y. Terui、Y. Omata、M. Seki、S. Tani、A. Terashima、S. Kanazawa、M. Hosonuma、J. Miyahara、K. Makabe、S. Onodera、F. Yano、H. Kajiya、F. Gori、T. Saito、K. Okabe、Y. Suzuki、R. Baron、U. Chung、S. Tanaka、H. Hojo.
    • Organizer
      Cell Bio 2023
    • Int'l Joint Research
  • [Presentation] Uncovering the Role of RNA Polymerase II Phosphorylation in Genome-Wide Epigenetic Heterogeneity through Transcription-Coupled Nucleosome Reassembly2023

    • Author(s)
      Takuya Kajitani
    • Organizer
      Cell Symposia "The conceptual power of single cell biology"
    • Int'l Joint Research
  • [Presentation] Subcellular sequencing by iSCseq connects transcriptomics with morphological, physical, and physiological findings2023

    • Author(s)
      Hiroyuki Okada、Yuta Terui、Masahide Seki、Yutaka Suzuki、Roland Baron、Ung-il Chung、Sakae Tanaka、Hironori Hojo
    • Organizer
      Cell Symposia "The conceptual power of single cell biology"
    • Int'l Joint Research
  • [Presentation] Transcriptional restart causes chromosomal rearrangements at centromeres2023

    • Author(s)
      Ran Xu、Crystal Tang、Takuro Nakagawa
    • Organizer
      Cold Spring Harbor Asia Conference on YEAST AND LIFE SCIENCES
    • Int'l Joint Research
  • [Presentation] Subcellular sampling and sequencing by iSCseq connects transcriptomics with morphological, physical, and physiological findings in osteoimmunology.2023

    • Author(s)
      Hiroyuki Okada、Yuta Terui、Yasunori Omata、Masahide Seki 、Shoichiro Tani、Junya Miyahara、Kenta Makabe、Asuka Terashima、Sanshiro Kanazawa、Masahiro Hosonuma、Shoko Onodera、Fumiko Yano、Hiroshi Kajiya、Taku Saito、Yutaka Suzuki、Koji Okabe、Roland Baron、Sakae Tanaka、Ung-il Chung、Hironori Hojo.
    • Organizer
      Cold Spring Harbor Laboratory Meeting “Single Cell Analyses 2023”
    • Int'l Joint Research
  • [Presentation] Effects of cofactors on functional expression of Drosophila melanogaster nicotinic acetylcholine receptors in Xenopus laevis oocytes and neonicotinoid actions2023

    • Author(s)
      Ryo Ito、Koichi Takayama、Makoto Ihara、David B. Sattelle、and Kazuhiko Matsuda
    • Organizer
      Control of Human Disease Vectors, Pests and Parasites Meeting the challenges of resistance and sustainability (Cambridge, UK)
    • Int'l Joint Research
  • [Presentation] Role of the Drosophila melanogaster Dα4 and Dβ3 subunits in their interactions with neonicotinoids2023

    • Author(s)
      Koichi Takayama、Yuma Komori、Makoto Ihara、David B. Sattelle、and Kazuhiko Matsuda
    • Organizer
      Control of Human Disease Vectors, Pests and Parasites Meeting the challenges of resistance and sustainability (Cambridge, UK)
    • Int'l Joint Research
  • [Presentation] Mechanisms of CTGF-positive subplate neuron specification during cortical development and evolution2023

    • Author(s)
      隈元拓馬、野口友理佳、片山涼香、真田莉花
    • Organizer
      Cortical Evolution 2023
    • Int'l Joint Research
  • [Presentation] Molecular mechanism of initiating centriole triplet microtubule assembly by HYLS12023

    • Author(s)
      Takeda Y、Chinen T、Honda S、Takatori S、Okuda S、Yamamoto S、Fukuyama M、Takeuchi K、Tomita T、Hata S and Kitagawa D
    • Organizer
      EMBO Workshop Centrosomes in development, disease and evolution
    • Int'l Joint Research
  • [Presentation] The clinical validity of tumor-informed ctDNA monitoring using a library of 1,000 dPCR primer/probe sets2023

    • Author(s)
      Nishizuka SS、Hiraki H、Yashima-Abo A、Iwaya T
    • Organizer
      European Liquid Biopsy Society General Assembly
    • Int'l Joint Research
  • [Presentation] For the development of a PCR primer design pipeline for detection of contamination in foods2023

    • Author(s)
      Yoritaka Harazono、Keisuke Soga、Masahiro Kasahara
    • Organizer
      Genome Informatics
    • Int'l Joint Research
  • [Presentation] Metagenomic characterization of novel electroactive microorganisms enriched from stibnite mine wastewater2023

    • Author(s)
      Hamamura N.、Kashima H.、Mitsunobu S.
    • Organizer
      Goldschmidt 2023
    • Int'l Joint Research
  • [Presentation] Molecular mechanism of SMC-mediated domain formation in archaea2023

    • Author(s)
      竹俣直道
    • Organizer
      Gordon Research Conference: Chromosome Biology From Cellular, Molecular and Physical Perspectives
    • Int'l Joint Research
  • [Presentation] H.pylori evolution and pathogenesis in Asia2023

    • Author(s)
      Yoshio Yamaoka
    • Organizer
      Helicobacter pylori Genomics, Signaling and Carcinogenesis(HGSC 2023)
    • Int'l Joint Research
  • [Presentation] Genomic and epigenomic analyses of integrative cinjugative elements presentation2023

    • Author(s)
      Yoshio Yamaoka
    • Organizer
      HpGp meeting 2023
    • Int'l Joint Research
  • [Presentation] Analysis of tissue stem cells and their differentiation trajectories in Xenopus tadpole tail regeneration : insights from single-cell RNA sequencing.2023

    • Author(s)
      Sumika Kato、Momoko Deguchi、Takeo Kubo、Taro Fukazawa
    • Organizer
      Inaugural Meeting of The International Society for Regenerative Biology
    • Int'l Joint Research
  • [Presentation] The peopling from Eurasia to the Americas inferred from human genome analysis2023

    • Author(s)
      Kae Koganebuchi、Hiroki Oota.
    • Organizer
      INQUA Roma 2023
    • Int'l Joint Research
  • [Presentation] Spatial genome organization during neural circuit formation2023

    • Author(s)
      Yuki Fujita
    • Organizer
      Neuroscience2023
    • Int'l Joint Research
  • [Presentation] A kinship analysis of human bones excavated from Jomon sites based on paleogenomics2023

    • Author(s)
      Yoshiki Wakiyama
    • Organizer
      SMBE 23
    • Int'l Joint Research
  • [Presentation] Detecting signals of positive natural selection in the Jomon people, prehistoric hunter-gatherers in the Japanese archipelago2023

    • Author(s)
      Yusuke Watanabe
    • Organizer
      SMBE 23
    • Int'l Joint Research
  • [Presentation] Paleolithic human migration inferred by Helicobacter pylori and its genome structure changes unthe couse of evoluation2023

    • Author(s)
      Rumiko Suzuki、Yoshio Yamaoka
    • Organizer
      SMBE 23
    • Int'l Joint Research
  • [Presentation] Functional analysis of novel membrane protein mediating dehydration stress response2023

    • Author(s)
      Haruka Otani、Wakana Inoue、Takehiro Suzuki、Naoshi Dohmae、Fuminori Takahashi
    • Organizer
      Taiwan-Japan Plant Biology 2023
    • Int'l Joint Research
  • [Presentation] Long term monitoring of growth and turion development of Lemna turionifera colonies revealed the signal perception region for the photoperiodic dormancy establishment2023

    • Author(s)
      Tokitaka Oyama、Shogo Ito
    • Organizer
      Taiwan-Japan Plant Biology 2023
    • Int'l Joint Research
  • [Presentation] High quality reference genome sequences of liverwort Toward completion of the Marchantia Genome Project2023

    • Author(s)
      Yasuhiro Tanizawa、Shogo Kawamura、Takako Mochizuki、Mika Sakamoto、Shohei Yamaoka、Ryuichi Nishihama、Facundo Romani、John L. Bowman、Frederic Berger、Takayuki Kohchi、Yasukazu Nakamura
    • Organizer
      Taiwan-Japan Plant Biology 2023
    • Int'l Joint Research
  • [Presentation] Stem cell-promoting CLE peptide signaling in the liverwort Marchantia polymorpha2023

    • Author(s)
      Yuki Hirakawa
    • Organizer
      Taiwan-Japan Plant Biology 2023
    • Int'l Joint Research
  • [Presentation] Srr1/Ber1 promotes isochromosomes formation at centromeres2023

    • Author(s)
      Ziyi Pan、Piyusha Mongia、Ran Xu、Naoko Toyofuku、Takuro Nakagawa
    • Organizer
      The 11th International Fission Yeast Meeting(POMBE2023)
    • Int'l Joint Research
  • [Presentation] Transcriptional restart causes chromosomal rearrangements at the centromere2023

    • Author(s)
      Ran Xu、Crystal Tang、Takuro Nakagawa
    • Organizer
      The 11th International Fission Yeast Meeting(POMBE2023)
    • Int'l Joint Research
  • [Presentation] Comprehensive analysis of spore chromatin in fission yeast2023

    • Author(s)
      Hayashi A.、Nakagawa R.、Ohkawa Y.、Nakayama J.
    • Organizer
      The 11th International Fission Yeast Meeting(POMBE2023)
    • Int'l Joint Research
  • [Presentation] High-precision detection of de novo mutations and application to risk assessment for the low-dose-rate longtime exposure to radiation2023

    • Author(s)
      Gondo Y、Uchimura A、Yoneya M、Tanaka S、Komura J、Kimura M、Ohno M、Toki H、Bando M、Tsunoyama Y、Matsumoto Y、Maki H、Shimada Y
    • Organizer
      The 14th International Workshop on Advanced Genomics
    • Int'l Joint Research
  • [Presentation] Non-coding RNA transcription and super-enhancer activation facilitate 3D genome structure.2023

    • Author(s)
      Akira Nishimura、Makiko Sasaki、Riski Muhaimin、Yukie Tanaka、Tomohiro Morio、Masatoshi Takagi、Takeshi Isoda
    • Organizer
      The 14th International Workshop on Advanced Genomics
    • Int'l Joint Research
  • [Presentation] Positive natural selection in the Jomon people, prehistoric hunter-gatherers in the Japanese archipelago2023

    • Author(s)
      Yusuke Watanabe
    • Organizer
      The 14th International Workshop on Advanced Genomics
    • Int'l Joint Research
  • [Presentation] Explore of differentially expressed genes in seeds with different dormancy in barley: Bioinformatic analysis using RNA-seq data2023

    • Author(s)
      Yuta Aoyagi、Hideki Hirakawa、Youko Oono、Shingo Nakamura
    • Organizer
      The 15th International Symposium on Pre-Harvest Sprouting in Cereals
    • Int'l Joint Research
  • [Presentation] AGO3 HITS-CLIP analysis identifies miRNA target genes2023

    • Author(s)
      Tomohito Yamasaki
    • Organizer
      The 20th International Conference on the Cell and Molecular Biology of Chlamydomonas
    • Int'l Joint Research
  • [Presentation] Tumor invasion initiates at Invasion Hotspots, an epithelial tissue-intrinsic microenvironment2023

    • Author(s)
      Yoichiro Tamori
    • Organizer
      The 27th European Drosophila Research Conference(EDRC 2023)
    • Int'l Joint Research
  • [Presentation] Identification of novel venom proteins required for Drosophila epithelial cell death by the parasitoid wasp Asobara japonica2023

    • Author(s)
      Kamiyama、Takumi、Shimada-Niwa、Yuko、Tani、Naoki、Shinoda、Akira、Mori、Hitoha、Senda、Toshiya、Nakamura、Akira、Niwa、Ryusuke
    • Organizer
      The 27th European Drosophila Research Conference(EDRC 2023)
    • Int'l Joint Research
  • [Presentation] Microbiota reconstruction analysis reveals core yeast species and microbe-microbe interactions impacting larval growth of Drosophila in the wild2023

    • Author(s)
      服部 佑佳子
    • Organizer
      The 27th European Drosophila Research Conference(EDRC 2023)
    • Int'l Joint Research
  • [Presentation] Functional analysis of JINGASA transcription factor in stem cell dynamics in Marchantia polymorpha2023

    • Author(s)
      Go Takahashi、Tomohiro Kiyosue、Yuki Hirakawa
    • Organizer
      The 33rd International Conference on Arabidopsis Research
    • Int'l Joint Research
  • [Presentation] Stem cell-promoting CLE peptide signaling in the shoot apical meristems of land plants2023

    • Author(s)
      Yuki Hirakawa
    • Organizer
      The 33rd International Conference on Arabidopsis Research
    • Int'l Joint Research
  • [Presentation] High parent dominance of trimethylation of lysine 27 of histone H3 level in intraspecific hybrids of Arabidopsis thaliana2023

    • Author(s)
      Saaya Shiraki、Kodai Matsuo、Satoshi Takahashi、Motoki Shimizu、Elizabeth S Dennis、Motoaki Seki、Ryo Fujimoto
    • Organizer
      The 33rd International Conference on Arabidopsis Research (ICAR 2023)
    • Int'l Joint Research
  • [Presentation] snRNA-seq reveals the transcriptional landscape for host-regulated vascular connections in Arabidopsis and parasitic plant interaction.2023

    • Author(s)
      Mengqi Cui、Momoko Yamaji、Kaori M. Furuta、Natsumi Masumoto、Kie Kumaishi、Yasunori Ichihashi、Dongbo Shi、Ayako Kawamura、Keiko Sugimoto、Satoko Yoshida
    • Organizer
      The 33rd International Conference on Arabidopsis Research (ICAR 2023)
    • Int'l Joint Research
  • [Presentation] Molecular functions of AS2, a plant-specific AS2/LOB domain protein essential for leaf development and differentiation2023

    • Author(s)
      Sayuri Ando、Mika Nomoto、Hidekazu Iwakawa、Simon Vial-Pradel、Yasuomi Tada、Kotaro Yamamoto、Yasunori Machida、Shoko Kojima、Chiyoko Machida
    • Organizer
      The 33rd International Conference on Arabidopsis Research (ICAR 2023)
    • Int'l Joint Research
  • [Presentation] Multiple uORFs-mediated Light-dependent Translational Repression in the Arabidopsis Clock Gene LHY2023

    • Author(s)
      Haruka Aoyama、Yuma Ise、Akinori Takahashi、Tadashi Yamamoto Yukako Chiba
    • Organizer
      The 33rd International Conference on Arabidopsis Research (ICAR 2023)
    • Int'l Joint Research
  • [Presentation] Is ST18 a key regulator to expand the sbplate layer in primates?2023

    • Author(s)
      松村泰宏
    • Organizer
      The 38th International Kumamoto Medical Bioscience Symposium
    • Int'l Joint Research
  • [Presentation] Gonadal transition during sex change and ovotestis formation in the harlequin sandsmelt Parapercis pulchella2023

    • Author(s)
      Akifumi Yao、Hisanori Kohtsuka、Yutaka Suzuki、and Toru Miura
    • Organizer
      The 3rd AsiaEvo Conferecne
    • Int'l Joint Research
  • [Presentation] The genetic basis of wing pigmentation pattern evolution in Drosophila suzukii and its closely related species.2023

    • Author(s)
      Pertiwi R、Sato A、Tanaka KM、Takahashi A
    • Organizer
      The 3rd AsiaEvo Conference
    • Int'l Joint Research
  • [Presentation] Comparison of the histone modification H3 lysine 27 tri-methylation states between accessions in Chinese cabbage2023

    • Author(s)
      Saaya Shiraki、Hasan Mehraj、Satoshi Takahashi、Motoaki Seki、Elizabeth S Dennis、Ryo Fujimoto
    • Organizer
      The 4th Asian Horticultural Congress (AHC2023)
    • Int'l Joint Research
  • [Presentation] Genetic and epigenetic approaches for understanding molecular mechanism of heterosis in shoots at early developmental stages of Chinese cabbage2023

    • Author(s)
      Ryo Fujimoto、Hasan Mehraj、Satoshi Takahashi、Motoki Shimizu、Takeshi Yasuda、Motoaki Seki、Elizabeth S. Dennis
    • Organizer
      The 4th Asian Horticultural Congress (AHC2023)
    • Int'l Joint Research
  • [Presentation] Novel venom proteins of the parasitoid wasp Asobara japonica play an essential role in Drosophila epithelial cell death2023

    • Author(s)
      Kamiyama、Takumi、Shimada-Niwa、Yuko、Tani、Naoki、Shinoda、Akira、Mori、Hitoha、Senda、Toshiya、Nakamura、Akira、Niwa、Ryusuke
    • Organizer
      The 6th Asian-Pacific Drosophila Research Conference (APDRC)
    • Int'l Joint Research
  • [Presentation] Application of scRNA-seq technology to explore the evolutionary dynamics of Kenyon cell types, which comprise the higher-order brain center, in Hymenoptera.2023

    • Author(s)
      Takayoshi Kuwabara、Hiroki Kohno、Masatsugu Hatakeyama、Takeo Kubo
    • Organizer
      The CSHL Single Cell Analyses meeting
    • Int'l Joint Research
  • [Presentation] Investigation of novel therapeutic targets for brain metastasis using MGS method2023

    • Author(s)
      Kojiro Ishibashi、Eishu Hirata
    • Organizer
      第18回生命医科学研究所ネットワーク国際シンポジウム
    • Int'l Joint Research
  • [Presentation] 常識外れの巨大ウイルスの生態・進化2023

    • Author(s)
      緒方博之
    • Organizer
      ウイルス学若手研究集会2023
    • Invited
  • [Presentation] 一細胞オミクス解析によるリンパ腫微小環境に着目したトランスレーショナルリサーチ2023

    • Author(s)
      安部佳亮
    • Organizer
      シングルセルゲノミクス研究会2023
    • Invited
  • [Presentation] モデル植物シロイヌナズナを感染モデルとして利用する試み2023

    • Author(s)
      垣内力、石川一也
    • Organizer
      第96回日本細菌学会総会
    • Invited
  • [Presentation] 日本国内におけるピロリ菌の遺伝子的分化2023

    • Author(s)
      友成航平、山岡吉生
    • Organizer
      九州微生物研究会
    • Invited
  • [Presentation] 空間解析技術の進展とがんへの応用2023

    • Author(s)
      鈴木 穣
    • Organizer
      心・腎・代謝領域 Scientific Exchange Meeting 2024
    • Invited
  • [Presentation] 仔マウスへの行動選択制御に関わる分界条シナプス機能の解析2023

    • Author(s)
      天野大樹
    • Organizer
      生体機能と創薬シンポジウム2023
    • Invited
  • [Presentation] スヴァンテ・ペーボ氏のノーベル賞受賞と古代ゲノム学の歴史2023

    • Author(s)
      太田博樹
    • Organizer
      生物学史シンポジウム
    • Invited
  • [Presentation] Investigation of human sperm chromatin structure and its heterogeneity by NGS analyses2023

    • Author(s)
      岡田由紀
    • Organizer
      第110回日本泌尿器科学会総会
    • Invited
  • [Presentation] メラノーマの治療選択におけるがん遺伝子パネル検査2023

    • Author(s)
      肥田時征
    • Organizer
      第122回日本皮膚科学会総会
    • Invited
  • [Presentation] 樹状細胞の分化と活性化におけるクロマチン高次構造の動態解析2023

    • Author(s)
      黒滝 大翼
    • Organizer
      第18回血液学若手研究者勉強会(麒麟塾)
    • Invited
  • [Presentation] がん細胞進化の起点となる Polyploid Cells2023

    • Author(s)
      田守 洋一郎
    • Organizer
      第1回倍数性研究会
    • Invited
  • [Presentation] コイ科魚類における全ゲノム重複と進化2023

    • Author(s)
      大森義裕
    • Organizer
      第1回倍数性研究会
    • Invited
  • [Presentation] 組織内力場からみた幹細胞老化2023

    • Author(s)
      豊島文子
    • Organizer
      第22回日本再生医療学会総会
    • Invited
  • [Presentation] データ構造から理解するシングルセル遺伝子発現/ゲノムアクセシビリティ解析法 ~公共データを心臓血管発生研究に活かす~2023

    • Author(s)
      岩瀬晃康
    • Organizer
      第22回日本心臓血管発生研究会
    • Invited
  • [Presentation] Pinpoint adaptive evolution emerging from 100s of H. pylori genome comparison2023

    • Author(s)
      Ichizo Kobayashi
    • Organizer
      第29回日本ヘリコバクター学会学術集会
    • Invited
  • [Presentation] 基礎研究Helicobacter属最近の病原性2023

    • Author(s)
      山岡 吉生
    • Organizer
      第29回日本ヘリコバクター学会学術集会
    • Invited
  • [Presentation] がん細胞とグリア細胞の多面的相互作用と細胞死2023

    • Author(s)
      平田 英周
    • Organizer
      第31回日本CellDeath学会学術集会
    • Invited
  • [Presentation] 乳がん幹細胞とその治療戦略2023

    • Author(s)
      後藤典子
    • Organizer
      第31回日本医学会総会2023東京
    • Invited
  • [Presentation] 高感度個別化腫瘍マーカーとしてのctDNA検査2023

    • Author(s)
      岩谷 岳、西塚 哲
    • Organizer
      第34回日本消化器癌発生学会総会
    • Invited
  • [Presentation] Molecular mechanism of SMC-mediated domain formation in archaea2023

    • Author(s)
      竹俣直道
    • Organizer
      第3回Hi-C研究会
    • Invited
  • [Presentation] 空間トランスクリプトーム解析の進展~がん組織内多様性の解析2023

    • Author(s)
      鈴木 穣
    • Organizer
      第40回分子病理学研究会クラークシンポジウム
    • Invited
  • [Presentation] 運動器発のサブセルラーシーケンスで細胞生物学の常識に挑む2023

    • Author(s)
      岡田 寛之、照井 悠太、小俣 康徳、関 真秀、谷 彰一郎、宮原 潤也、真壁 健太、寺島 明日香、金澤 三四朗、細沼 雅弘、矢野 文子、小野寺 晶子、鍛治屋 浩、斎藤 琢、鈴木 穣、岡部 幸司、Roland Baron、田中 栄、鄭 雄一、北條 宏徳
    • Organizer
      第41回日本骨代謝学会学術集会
    • Invited
  • [Presentation] 皮膚のリモデリングとエイジング2023

    • Author(s)
      豊島文子
    • Organizer
      第44回日本基礎老化学会シンポジウム
    • Invited
  • [Presentation] 脂肪細胞分化のエピゲノム制御における鉄代謝2023

    • Author(s)
      稲垣 毅
    • Organizer
      第44回日本肥満学会・第41回日本肥満症治療学会学術集会
    • Invited
  • [Presentation] 性染色体の入れ替わり現象の解明に向けて―XY染色体とZW染色体を同一種内にもつ日本生息のツチガエルを例に―2023

    • Author(s)
      桂 有加子
    • Organizer
      第46回日本分子生物学会年会
    • Invited
  • [Presentation] カルシウムシグナルの破綻がもたらす細胞増殖異常とがん2023

    • Author(s)
      島田 緑
    • Organizer
      第46回日本分子生物学会年会
    • Invited
  • [Presentation] 「ピン留め」と「退縮」による昆虫の形態形成2023

    • Author(s)
      後藤 寛貴
    • Organizer
      第46回日本分子生物学会年会
    • Invited
  • [Presentation] Y染色体を失いながらもオスが生まれる哺乳類種の性決定メカニズム2023

    • Author(s)
      黒岩麻里
    • Organizer
      第46回日本分子生物学会年会
    • Invited
  • [Presentation] 再生能を失う進化プロセス解明の試み2023

    • Author(s)
      越智陽城
    • Organizer
      第46回日本分子生物学会年会
    • Invited
  • [Presentation] Domestication origin and genetic basis of diverse phenotypes of ornamental medaka strains2023

    • Author(s)
      Kon Tetsuo、Tang Rui、Fukuta Kentaro、Fushiki Soichiro、Kon-Nanjo Koto、Noguchi Hideki、Toyoda Atsushi、Naruse Kiyoshi、Omori Yoshihiro
    • Organizer
      第46回日本分子生物学会年会
    • Invited
  • [Presentation] 自然界でショウジョウバエ幼虫の成長を支える共生酵母種と微生物間相互作用の解明2023

    • Author(s)
      牟禮 あゆみ
    • Organizer
      第46回日本分子生物学会年会
    • Invited
  • [Presentation] Repeated translocation of a sex-determining gene complex underlying rapid sex chromosome turnover2023

    • Author(s)
      菊池潔、Kabir Ahamad、家田梨櫻、遠藤詩織、細谷将
    • Organizer
      第46回日本分子生物学会年会
    • Invited
  • [Presentation] ホウレンソウから見出される多様な性表現型2023

    • Author(s)
      小野寺 康之、平川 英樹、豊田 敦、田中 啓介、パチャキル バビル
    • Organizer
      第46回日本分子生物学会年会
    • Invited
  • [Presentation] AIのレンズを通じて見る多細胞システムのダイナミクス2023

    • Author(s)
      島村徹平
    • Organizer
      第46回日本分子生物学会年会
    • Invited
  • [Presentation] シングルセル解析/空間解析でリンパ腫微小環境を探索する2023

    • Author(s)
      安部佳亮
    • Organizer
      第46回日本分子生物学会年会
    • Invited
  • [Presentation] Phosphoregulation of DSB-1 controls meiotic DNA double strand break activity in C. elegans2023

    • Author(s)
      Aya Sato、Keita Kameda、Sohei Sasagawa、Heyun Guo、Ericca Stamper、Abby Dernburg、Peter Carlton
    • Organizer
      第46回日本分子生物学会年会
    • Invited
  • [Presentation] テトラヒメナのDNA削減機構と核の二型化の進化的背景2023

    • Author(s)
      片岡研介
    • Organizer
      第46回日本分子生物学会年会
    • Invited
  • [Presentation] がん細胞の増殖を調節する長鎖非翻訳RNAの解析2023

    • Author(s)
      近藤豊
    • Organizer
      第46回日本分子生物学会年会
    • Invited
  • [Presentation] FXYD3 functionally demarcates an ancestral breast cancer stem cell subpopulation with features of drug-tolerant persisters2023

    • Author(s)
      後藤典子
    • Organizer
      第46回日本分子生物学会年会
    • Invited
  • [Presentation] 大規模継代培養実験による 微生物生態系の再構成2023

    • Author(s)
      前田 智也
    • Organizer
      第4回シンポジウム・ビフィズス菌研究会
    • Invited
  • [Presentation] 成体脳における転移因子のエピジェネティクスと精神疾患2023

    • Author(s)
      岩本和也
    • Organizer
      第53回日本神経精神薬理学会年会
    • Invited
  • [Presentation] シングルセルマルチオミクスと空間情報に基づく心臓神経堤細胞の血管/非血管細胞への分化運命決定機構~発生学的起源から病態を考える~2023

    • Author(s)
      岩瀬晃康、内島泰信、瀬谷大貴、来田真友子、野村征太郎、興梠貴英、宿南知佐、秋山治彦、関真秀、鈴木穣、和田洋一郎、油谷浩幸、栗原由紀子、宮川、富田幸子、栗原裕基
    • Organizer
      第55回日本動脈硬化学会
    • Invited
  • [Presentation] Knowledge and remaining questions of adult pluripotent stem cell in freshwater planarians.2023

    • Author(s)
      Makoto Kashima、Rei Komura、Rei Kajitani、Takehiko Itoh、Atsushi Toyoda
    • Organizer
      第56回日本発生生物学会大会
    • Invited
  • [Presentation] 深層学習による細胞ダイナミクスの新次元俯瞰2023

    • Author(s)
      島村徹平
    • Organizer
      第5回がんと代謝研究会・若手の会
    • Invited
  • [Presentation] 未病検知のための深層生成モデルの開発と応用2023

    • Author(s)
      島村徹平
    • Organizer
      第5回日本メディカルAI学会学術集会
    • Invited
  • [Presentation] 第二世代空間解析技術が明らかにするがん組織内遺伝子発現の多様性2023

    • Author(s)
      鈴木 穣
    • Organizer
      第61回日本癌治療学会学術集会
    • Invited
  • [Presentation] 精神疾患発症機序解明に向けた維持型DNAメチル化酵素DNMT1の神経細胞における機能解析2023

    • Author(s)
      波平昌一
    • Organizer
      第64回日本神経病理学会総会学術研究会第66回日本神経化学会大会合同大会
    • Invited
  • [Presentation] シングルセル解析について~これからの腎シングルセル研究への活用と展望も交えて~2023

    • Author(s)
      鈴木 穣
    • Organizer
      第66回日本腎臓学会学術総会
    • Invited
  • [Presentation] テトラヒメナのトランスポゾン排除機構2023

    • Author(s)
      片岡研介
    • Organizer
      第6回転移因子研究会
    • Invited
  • [Presentation] 骨髄性造血器腫瘍におけるDDX41バリアントの意義2023

    • Author(s)
      松井啓隆
    • Organizer
      第70回日本臨床検査医学会学術集会
    • Invited
  • [Presentation] Dermal stiffness regulates epidermal stem cell function.2023

    • Author(s)
      Fumiko Toyoshima
    • Organizer
      第75回日本細胞生物学会大会
    • Invited
  • [Presentation] SS2000は生サブセルラーシーケンスを可能に2023

    • Author(s)
      岡田 寛之
    • Organizer
      第75回日本細胞生物学会大会
    • Invited
  • [Presentation] Breast tumor microenviroment regulated by mitochondrial one-carbon metabolism2023

    • Author(s)
      後藤典子
    • Organizer
      第82回日本癌学会学術集会
    • Invited
  • [Presentation] OTS-Assay -Tumor-informed highly-sensitive digital PCR for the navigation of advanced cancer treatment?2023

    • Author(s)
      Nishizuka SS
    • Organizer
      第82回日本癌学会学術集会
    • Invited
  • [Presentation] Unraveling the Mechanisms of Aberrant Post-Transcriptional Regulation in Cancer: Implications for Therapeutic Strategies2023

    • Author(s)
      井上大地
    • Organizer
      第82回日本癌学会学術総会
    • Invited
  • [Presentation] 一細胞解析によるリンパ腫微小環境マイナーサブセットの同定2023

    • Author(s)
      安部佳亮
    • Organizer
      第82回日本癌学会学術総会
    • Invited
  • [Presentation] Y染色体に依存しない哺乳類の新しい性決定メカニズムの解明2023

    • Author(s)
      黒岩麻里
    • Organizer
      第88回日本泌尿器科学会
    • Invited
  • [Presentation] メカニカルストレス応答性の関節滑膜の細胞変容と恒常性機構2023

    • Author(s)
      小俣 康徳、齋藤 琢、田中 栄
    • Organizer
      第8回日本骨免疫学会
    • Invited
  • [Presentation] 破骨細胞のデジタルハック; シングルセルを超えてサブセルラーへ2023

    • Author(s)
      岡田 寛之、照井 悠太、小俣 康徳、関 真秀、谷 彰一郎、宮原 潤也、真壁 健太、寺島 明日香、金澤 三四朗、細沼 雅弘、矢野 文子、小野寺 晶子、鍛治屋 浩、斎藤 琢、鈴木 穣、岡部 幸司、Roland Baron、田中 栄、鄭 雄一、北條 宏徳
    • Organizer
      第8回日本骨免疫学会
    • Invited
  • [Presentation] メディエーター複合体の液滴による転写ユニティー制御機構の解明2023

    • Author(s)
      鈴木 秀文、阿部 竜太、池 陽子、古郡 華月、小川 真太郎、豊田 敦、鈴木 穣、井野 洋子、木村 弥生、秋山 智彦、石川 博子、廣瀬 智威、山本 達郎、斉藤 典子、山口 雄輝、高橋 秀尚
    • Organizer
      第96回日本生化学会大会
    • Invited
  • [Presentation] RNA-binding proteins form meshworks in nuclei to regulate splicing2023

    • Author(s)
      増田章男、岡本喬明
    • Organizer
      第96回日本生化学会大会
    • Invited
  • [Presentation] シングルセルマルチオミクスを用いた多細胞連関による心血管システム構築2023

    • Author(s)
      岩瀬晃康、内島泰信、瀬谷大貴、来田真友子、東山大毅、松居一悠、田口明糸、山本尚吾、福田史朗、野村征太郎、興梠貴英、宿南知佐、秋山治彦、関真秀、鈴木穣、和田洋一郎、油谷浩幸、栗原由紀子、宮川-富田幸子、栗原裕基
    • Organizer
      第96回日本生化学会大会
    • Invited
  • [Presentation] 細胞運命の直接転換と形質維持に関する転写因子の役割2023

    • Author(s)
      堀澤健一、鈴木淳史
    • Organizer
      第96回日本生化学会大会
    • Invited
  • [Presentation] 深層生成モデルによる細胞運命決定シミュレーション2023

    • Author(s)
      島村徹平
    • Organizer
      第96回日本生化学会大会
    • Invited
  • [Presentation] 内在性DNAリガンドによるミクログリア活性化を介したレット症候群発症機構2023

    • Author(s)
      中嶋秀行、中島欽一
    • Organizer
      第96回日本生化学会大会
    • Invited
  • [Presentation] レトロトランスポゾンLINE-1のエピジェネティクスと精神疾患2023

    • Author(s)
      岩本和也
    • Organizer
      第96回日本生化学会大会
    • Invited
  • [Presentation] 1生細胞内シーケンスで多核巨細胞の遺伝子発現制御に挑む2023

    • Author(s)
      岡田 寛之、照井 悠太、小俣 康徳、関 真秀、谷 彰一郎、宮原 潤也、真壁 健太、寺島 明日香、金澤 三四朗、細沼 雅弘、矢野 文子、小野寺 晶子、鍛治屋 浩、斎藤 琢、鈴木 穣、岡部 幸司、Roland Baron、田中 栄、鄭 雄一、北條 宏徳
    • Organizer
      第96回日本生化学会大会
    • Invited
  • [Presentation] Iron-dependent Epigenomic Regulation Mechanism in Adipocyte Differentiation2023

    • Author(s)
      稲垣 毅
    • Organizer
      第96回日本生化学会大会
    • Invited
  • [Presentation] 世界のゲノム研究の潮流と我が国での今後の展開2023

    • Author(s)
      鈴木 穣
    • Organizer
      第97回日本薬理学会年会
    • Invited
  • [Presentation] 雄マウスの仔マウスに対する行動変化と相関するシナプス特性2023

    • Author(s)
      天野大樹
    • Organizer
      第97回日本薬理学会年会
    • Invited
  • [Presentation] マウス筋腱相互作用と形態形成2023

    • Author(s)
      乾雅史
    • Organizer
      第9回日本筋学会学術集会
    • Invited
  • [Presentation] SEX-linked loci in a recombination-suppressed region confer femaleness at gene expression level in Seriola fish.2023

    • Author(s)
      Takashi Koyama
    • Organizer
      日本遺伝学会第95回大会
    • Invited
  • [Presentation] 遺伝と遺伝子は違う:化学変異原から放射線まで2023

    • Author(s)
      権藤洋一
    • Organizer
      日本遺伝学会第95回大会
    • Invited
  • [Presentation] RNA polymerase II Ser7リン酸化は、転写と共役したヌクレオソーム再構築を促進して転写一時停止を安定化する2023

    • Author(s)
      梶谷卓也、加藤太陽、沖昌也、木村宏、大川恭行、小布施力史、Damien Hermand、John Lis、村上洋太
    • Organizer
      日本遺伝学会第95回大会
    • Invited
  • [Presentation] 溶血性レンサ球菌によるヒアルロン酸資化機構とそれに伴う病原性発揮機構2023

    • Author(s)
      小倉康平
    • Organizer
      日本応用糖質科学会第49回近畿支部会
    • Invited
  • [Presentation] 非光合成性珪藻類のゲノム解析:光合成能の喪失はゲノム進化と生態にどこまで影響するか?2023

    • Author(s)
      神川龍馬
    • Organizer
      日本植物学会第87回大会
    • Invited
  • [Presentation] ヒメミカヅキモのゲノム解読と緑色植物特異的転写因子RWP-RKの機能2023

    • Author(s)
      関本弘之
    • Organizer
      日本植物学会第87回大会
    • Invited
  • [Presentation] 遺伝子発現とイメージング2023

    • Author(s)
      澁田未央
    • Organizer
      日本植物形態学会第35回総会・大会(札幌大会)
    • Invited
  • [Presentation] Spatial analysis to reveal the cancer microenviroments2023

    • Author(s)
      Yutaka Suzuki
    • Organizer
      日本人類遺伝学会第68回大会
    • Invited
  • [Presentation] Mechanism of community assembly in the subseafloor biosphere2023

    • Author(s)
      Tatasuhiko Hoshino、Rei Kajitani
    • Organizer
      日本地球惑星科学連合2023年大会
    • Invited
  • [Presentation] 根の微生物叢をひたすら調べてみたーイネの遺伝型や生育との関係ー2023

    • Author(s)
      村瀬 潤
    • Organizer
      日本土壌肥料学会2023年度愛媛大会
    • Invited
  • [Presentation] Y染色体と性決定遺伝子をもたない哺乳類の研究2023

    • Author(s)
      黒岩麻里
    • Organizer
      日本動物学会第94回山形大会
    • Invited
  • [Presentation] 広塩性の扁形動物でひもとく海から淡水/陸上への進出をもたらしたメカニズム -プラチトシン&ビヨンド-2023

    • Author(s)
      坂本竜哉
    • Organizer
      日本動物学会第94回山形大会
    • Invited
  • [Presentation] 同一種内にXYとZW染色体をもつツチガエルのゲノムと性染色体解析2023

    • Author(s)
      桂 有加子
    • Organizer
      日本両生類爬虫類学会第62回大会
    • Invited
  • [Presentation] トゲネズミ属の性決定メカニズムの進化2023

    • Author(s)
      黒岩麻里
    • Organizer
      日本哺乳類学会2023年度大会100周年記念沖縄大会公開シンポジウム
    • Invited
  • [Presentation] ポソ湖において同所的種分化したメダカ属魚類のゲノム分化と表現型分化の遺伝基盤2023

    • Author(s)
      柿岡諒、安齋賢、田中理映子、佐藤正祐、北野潤、木村亮介、山平寿智
    • Organizer
      2023年度魚類学会年会
  • [Presentation] 子宮頸癌におけるドライバー変異の同定と、簡便なリキッドバイオプシー開発のための基礎的検討2023

    • Author(s)
      吉本由哉、尾池貴洋、安藤謙、鈴木義行、大野達也
    • Organizer
      2023年度第60回日本放射線腫瘍学会生物部会学術大会
  • [Presentation] コフキトンボの紫外線反射とメス多型2023

    • Author(s)
      二橋亮
    • Organizer
      2023年度日本トンボ学会東京大会
  • [Presentation] ゲノムプロファイリング検査の日常診療における個別化ctDNA検査への有効活用2023

    • Author(s)
      岩谷 岳、西塚 哲
    • Organizer
      2023年度日本消化器関連学会週間
  • [Presentation] Chemical nature of attention deficit hyperactivity disorder (ADHD)-related chemical subfamily2023

    • Author(s)
      石堂正美
    • Organizer
      2023年日本バイオインフォマティクス学会年会・第12回生命医薬情報学連合大会
  • [Presentation] Identification of m3C modification sites using nanopore direct RNA-sequencing2023

    • Author(s)
      Shuhei Mitsutomi、Kenzui Taniue、Anzu Sugawara、Nobuyoshi Akimitsu
    • Organizer
      2023年日本バイオインフォマティクス学会年会・第12回生命医薬情報学連合大会
  • [Presentation] エクソソーム中の修飾マイクロRNAに着目した新規膵臓がんマーカーの開発2023

    • Author(s)
      今野雅允、小関準、大川眞裕香、石井秀始、大城敬人、谷口正輝、森正樹
    • Organizer
      第10回日本細胞外小胞学会学術集会
  • [Presentation] Brassica rapaにおけるH3K4me3とH3K36me3の遺伝子発現における役割2023

    • Author(s)
      白木沙彩、Mehraj Hasan、安田剛志、藤本龍
    • Organizer
      園芸学会令和5年度春季大会
  • [Presentation] 四倍体ブルーベリーにお ける高密度連鎖地図を用いた遺伝様式の検討2023

    • Author(s)
      長坂京香、西村和紗、元木航、山形啓悟、西山総 一郎、山根久代、田尾龍 太郎、中野龍平、中﨑鉄也
    • Organizer
      園芸学会令和5年度春季大会
  • [Presentation] アーキアにおける染色体ドメイン構造の形成機構2023

    • Author(s)
      竹俣直道
    • Organizer
      極限環境生物学会2023年度(第24回)年会
  • [Presentation] Metagenomic characterization of electrosynthetic microorganisms2023

    • Author(s)
      Hamamura N.、Kashima H.、Mitsunobu S.
    • Organizer
      九州微生物研究フォーラム2023
  • [Presentation] 根粒共生における Wall-associated Kinase1の機能解析2023

    • Author(s)
      波田晋太郎 川崎真優 赤松明 武田直也
    • Organizer
      植物微生物研究会
  • [Presentation] 日長応答性を示す機能未知遺伝子の解析2023

    • Author(s)
      中山友哉、吉村崇
    • Organizer
      生物リズム若手研究者の集い2023
  • [Presentation] Phosphoregulation of DSB-1 controls meiotic DNA double strand break activity in C. elegans2023

    • Author(s)
      Aya Sato、Keita Kameda、Sohei Sasagawa、Heyun Guo、Ericca Stamper、Abby Dernburg、Peter Carlton
    • Organizer
      線虫研究の未来を創る会2023
  • [Presentation] Comparison of type I IFN-induced agonists in the tumor microenvironment2023

    • Author(s)
      小坂朱
    • Organizer
      第112回日本病理学会総会
  • [Presentation] オオムギ出穂期突然変異体のエキソーム解析と遺伝解析による原因遺伝子の探索2023

    • Author(s)
      大熊眞歩、西村和紗、門田有希、加藤鎌司、西田英隆
    • Organizer
      第15回中国地域育種談話会
  • [Presentation] 内在性DNAを介したミクログリア活性化によるレット症候群発症機構2023

    • Author(s)
      中嶋秀行、中島欽一
    • Organizer
      第16回日本エピジェネティクス研究会年会
  • [Presentation] 細胞分化におけるIrf8エンハンサークラスターのシス/トランス制御が複合した相互活性化2023

    • Author(s)
      西山 晃、山﨑貴弥、田村智彦
    • Organizer
      第16回日本エピジェネティクス研究会年会
  • [Presentation] 進化的に保存された長鎖非翻訳RNA ECONEXINによる大脳皮質の発生制御機構2023

    • Author(s)
      渡辺 新也.鈴木 美穂.室伏 善照.新城恵子、近藤 豊
    • Organizer
      第16回日本エピジェネティクス研究会年会
  • [Presentation] 分裂酵母の胞子におけるヒストン修飾の網羅的解析2023

    • Author(s)
      林亜紀、中川れい子、大川恭行、中山潤一
    • Organizer
      第16回日本エピジェネティクス研究会年会
  • [Presentation] 胃がん関連長鎖non-coding RNAはストレス顆粒形成とアポトーシスの阻害に関与する2023

    • Author(s)
      北嶋洋志、丸山玲緒、新沼猛、高澤啓、石黒一也、甲斐正広、吉戸文乃、小山内誠、時野隆至、仲瀬裕志、鈴木拓
    • Organizer
      第16回日本エピジェネティクス研究会年会
  • [Presentation] 生殖細胞発生と胚発生のための幹細胞クロマチンプライミング2023

    • Author(s)
      富澤信一、小林裕貴、Rachel Fellows、鈴木穣、小倉淳郎、大保和之
    • Organizer
      第16回日本エピジェネティクス研究会年会
  • [Presentation] Transposable element activation in soybean ddm1 mutant2023

    • Author(s)
      Ahsen Gers、Moeko Okada、Keiichi Okazaki、Eigo Fukai
    • Organizer
      第18回東北育種研究集会
  • [Presentation] Regulation of hematopoietic stem cell aging by adaptive immunity2023

    • Author(s)
      田所優子
    • Organizer
      第20回幹細胞シンポジウム
  • [Presentation] FGF受容体ファミリーの変異が子宮頸癌放射線治療予後に及ぼす影響2023

    • Author(s)
      吉本由哉
    • Organizer
      第20回日本免疫治療学会学術集会
  • [Presentation] 昆虫の構造色発色の分子機構の解明と利用を目指して2023

    • Author(s)
      神村 学
    • Organizer
      第21回構造色シンポジウム
  • [Presentation] 脂肪細胞分化のエピゲノム制御における鉄の役割2023

    • Author(s)
      稲垣 毅
    • Organizer
      第21回生体機能研究会
  • [Presentation] 我が国におけるアスペルギルスフミガタスの遺伝系統の分布と薬剤耐性に関する研究2023

    • Author(s)
      He Xiaohui、楠屋陽子、萩原大祐、豊留孝仁、新居鉄平、Bian Cai、永山聖樹、柴田紗帆、渡邉哲、高橋弘喜
    • Organizer
      第22回糸状菌分子生物学コンファレンス
  • [Presentation] 神経堤細胞との連携によるマクロファージの心臓発生への関与2023

    • Author(s)
      来田真友子、岩瀬 晃康、田口明糸、山本麻未、加藤洋人、石川俊平、鈴木穣、和田洋一郎、宮川-富田 幸子、栗原 裕基
    • Organizer
      第22回日本心臓血管発生研究会
  • [Presentation] Elucidation of the molecular function of Qin in the germline piRNA pathway2023

    • Author(s)
      Yurika Namba、Kazumichi M. Nishida、Yukiteru Ono、Yui Kuroda、Kiyoshi Asai、Mikiko C. Siomi
    • Organizer
      第24回日本RNA学会年会
  • [Presentation] UPF1 controls early B cell development via regulation of V(D)J recombination2023

    • Author(s)
      Noriki Iwai、Kotaro Akaki、Fabian Hia、Li Wei、Takashi Mino、Osamu Takeuchi
    • Organizer
      第24回日本RNA学会年会
  • [Presentation] Spatial organization of RNA-binding protein networks to regulate splicing2023

    • Author(s)
      Takaaki Okamoto and Akio Masuda
    • Organizer
      第24回日本RNA学会年会
  • [Presentation] Light-dependent translational regulation through multiple uORFs in the Arabidopsis clock gene LHY2023

    • Author(s)
      Haruka Aoyama、Yuma Ise、Akinori Takahashi、Tadashi Yamamoto、Yukako Chiba
    • Organizer
      第24回日本RNA学会年会
  • [Presentation] タンキラーゼ阻害剤に耐性化した患者由来大腸がん細胞のベル型用量反応性機構2023

    • Author(s)
      森野峻、馬島哲夫、片山量平、清宮啓之
    • Organizer
      第27回日本がん分子標的治療学会学術集会
  • [Presentation] Analysis of fish innate immunity using mutant medaka of the genes involved in TLR signaling an d NK cell development2023

    • Author(s)
      Hiyori Sakaguchi、Masaru Matsuda、Norimasa Iwanami
    • Organizer
      第29回小型魚類研究会
  • [Presentation] プラスミド接合伝達の予測向上のためのゲノム解析と接合実験データの統合的アプローチ2023

    • Author(s)
      德田真穂、敦賀俊太、前田壮、山崎凜、金原和秀、新谷政己
    • Organizer
      第36回日本微生物生態学会
  • [Presentation] 間質線維芽細胞を介した 大腸恒常性維持機構の解明2023

    • Author(s)
      仁科 隆史
    • Organizer
      第3回ABISS学会
  • [Presentation] 新規遺伝子アノテーションで明らかになるスエヒロタケ複数株におけるゲノム構成の違い2023

    • Author(s)
      坂本美佳、松前ひろみ、小木曽映里、望月孝子、谷澤靖洋、クリュコフ・キリル、今西規、豊田敦、亀井克彦、細矢剛、中村保一
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] 様々なヘテロ接合性レベルを持つゲノムで検証された実用的なアセンブリガイドライン2023

    • Author(s)
      望月 孝子、坂本 美佳、谷澤 靖洋、中山 卓郎、谷藤 吾朗、神川 龍馬、中村 保一
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] Molecular profiling of fear extinction deficit induced by juvenile social isolation in mice2023

    • Author(s)
      Tatiana Sazhina、Akira Uematsu
    • Organizer
      第46回日本神経科学大会
  • [Presentation] 霊長類とマウスでのサブプレートマーカー遺伝子の比較解析2023

    • Author(s)
      松村泰宏、丸山千秋
    • Organizer
      第46回日本神経科学大会
  • [Presentation] CTGF陽性サブプレートニューロンの細胞運命決定のメカニズム2023

    • Author(s)
      隈元拓馬、野口友理佳、片山涼香、眞田莉花、丸山千秋
    • Organizer
      第46回日本神経科学大会
  • [Presentation] 偏食習慣が認知機能及び転写因子活性に与える影響の解明2023

    • Author(s)
      大森 彩音、安部 健太郎
    • Organizer
      第46回日本神経科学大会
  • [Presentation] 学習時の脳内転写因子活性の経時的計測2023

    • Author(s)
      小野寺 諒馬、福江 遼太郎、安部 健太郎
    • Organizer
      第46回日本神経科学大会
  • [Presentation] 昼夜の学習効率と脳内細胞状態変化の分子機構探索2023

    • Author(s)
      川島 海大、安部 健太郎
    • Organizer
      第46回日本神経科学大会
  • [Presentation] RNA polymerase II リン酸化は、転写と共役したヌクレオソーム再構築を促進してエピジェネティックな遺伝子発現不均質性を抑制する2023

    • Author(s)
      梶谷卓也、加藤太陽、沖昌也、木村宏、大川恭行、小布施力史、Damien Hermand、John Lis、村上洋太
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] 新規遺伝子アノテーションで明らかになるスエヒロタケ複数株におけるゲノム構成の違い2023

    • Author(s)
      坂本美佳 松前ひろみ 小木曽映里 望月孝子 谷澤靖洋 KRYUKOV Kirill 今西規 豊田敦 亀井克彦 細矢剛 中村保一
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] Fission yeast Srr1 and CENP-A cause gross chromosomal rearrangement at centromeres2023

    • Author(s)
      Ziyi Pan、Takuro Nakagawa
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] Transcriptional restart causes chromosomal rearrangements through DR-loop formation at centromeres2023

    • Author(s)
      Ran Xu、Crystal Tang、Takuro Nakagawa
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] Squalomixコンソーシアムによるサメ・エイ類の分子生物学研究:脊椎動物の進化と多様性の成立ちを理解するために2023

    • Author(s)
      山口 和晃、川口 茜、宇野 好宣 、門田 満隆、西村 理、松本 瑠偉、喜屋武 樹、加登岡 大希、都築 信隆、山内 信弥、山田 一幸、兵藤 晋、佐藤 圭一、工樂 樹洋
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] 哺乳類大脳新皮質におけるサブプレートニューロン獲得の進化的考察2023

    • Author(s)
      隈元拓馬
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] Unraveling the genetic regulatory network controlling L-R asymmetry in the anterior gut of Drosophila melanogaster2023

    • Author(s)
      Florian Lucas Neugebauer、Takuya Nomura、Mikiko Inaki、Kenji Matsuno
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] キンギョのパール鱗変異体をモデルとした鱗形成機構の理解2023

    • Author(s)
      松本沙織、黄一丞、湯瑞、伏木宗一郎、村宮一紀、永野敦、野口英樹、福多賢太郎、豊田敦、大森義裕
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] キンギョをモデルとしたメラノフォアの機能を制御する分子メカニズムの解析2023

    • Author(s)
      伏木宗一郎、松本沙織、湯瑞、村宮一紀、永野敦、福多賢太郎、野口英樹、豊田敦、大森義裕
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] 祖先転写制御の実験的復元から遺伝子が生まれる・消える過程を探る2023

    • Author(s)
      原 雄一郎、吉沢 直子、豊田 敦、川路 英哉
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] マウス多重多倍体化胚を用いた哺乳類個体の多倍体化阻止機構の探索2023

    • Author(s)
      今井啓之、松屋純人、宮澤秀幸、野口英樹、加納聖、日下部健
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] 流出路の形態形成における心室と大血管の連結関係を規定する分子機構2023

    • Author(s)
      八代健太
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] 幼若脳の抑制性ニューロン発達に伴う遺伝子発現とクロマチン制御におけるコヒーシンローダーの役割2023

    • Author(s)
      酒井晶子、中戸隆一郎、大庭ジーナ未来、西條栄子、Heiko Peters、白髭克彦、杉山清佳
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] 細胞運命の直接転換と形質維持における転写因子の機能2023

    • Author(s)
      堀澤健一、鈴木淳史
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] 浸潤を始めた腫瘍における細胞群間の不均一性と協調性の関係2023

    • Author(s)
      Asuka Ishii、Junki Ikeguchi、Yasuyuki Fujita、Yoichiro Tamori
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] エンハンサー群の協調機構が樹状細胞分化に必須の転写因子IRF8の発現を最適化する2023

    • Author(s)
      西山 晃、山﨑貴弥、田村智彦
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] 非モデル寄生蜂を用いたマルチオミクス解析および寄生関連遺伝子の同定2023

    • Author(s)
      Kamiyama、Takumi、Shimada、Yuko、Tani、Naoki、Shinoda、Akira、Mori、Hitoha、Senda、Toshiya、Nakamura、Akira、Niwa、Ryusuke
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] タンキラーゼ阻害剤に耐性化した患者由来大腸がん細胞のベル型用量反応性機構2023

    • Author(s)
      森野峻、馬島哲夫、白井文幸、長山聡、片山量平、清宮啓之
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] Epigenetic regulation of adipocyte differentiation via iron supply to the nucleus initiated by ferritinophagy2023

    • Author(s)
      稲垣 毅
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] 新規プロテアーゼインヒビターによる精子形成制御2023

    • Author(s)
      富澤 信一、Rachel Fellows、尾野 道男、黒羽 一誠、Ivana Dockal、南澤 恵佑、鈴木 穣、才津 浩智、大保 和之
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] シロイヌナズナの葉の発生分化に関わるAS2と核小体タンパク質は特定の遺伝子のDNAメチル化維持に関与する2023

    • Author(s)
      小島晶子 岩川秀和 日比野哲紀 高橋広夫 安藤沙友里 笹部美智子 伊藤正樹 町田泰則 町田千代子
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] シロイヌナズナの葉の発生分化におけるAS2のCGCCGC結合と核小体周縁部のAS2ボディ形成の役割の解明2023

    • Author(s)
      町田千代子 安藤沙友里 野元美佳 SimonVial-Pradel 岩川秀和 多田安臣 笹部美知子 町田泰則 小島晶子
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] シロイヌナスズナの葉の発生に関わるAS2の細胞内局在における核小体の役割2023

    • Author(s)
      安藤沙友里 岩川秀和 大林祝 杉山宗隆 笹部美知子 町田泰則 小島晶子 町田千代子
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] 空間情報を付加したショウジョウバエ原腸胚の1細胞トランスクリプトームアトラス2023

    • Author(s)
      Shunta Sakaguchi、Sonoko Mizuno、Yasushi Okochi、Chiharu Tanegashima、Osamu Nishimura、Tadashi Uemura、Mitsutaka Kadota、Honda Naoki、Takefumi Kondo
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] 発生期心臓におけるマクロファージの神経堤細胞との連携による冠血管・リンパ管形成制御への関与2023

    • Author(s)
      来田 真友子、岩瀬 晃康、田口明糸、加藤洋人、石川俊平、鈴木穣、和田洋一郎、宮川-富田 幸子、栗原 裕基
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] シングルセルマルチオミクスを用いた心血管発生学と病態形成の共通性2023

    • Author(s)
      岩瀬晃康、内島泰信、瀬谷大貴、来田真友子、東山大毅、松居一悠、田口明糸、山本尚吾、福田史朗、野村征太郎、興梠貴英、宿南知佐、秋山治彦、関真秀、鈴木穣、和田洋一郎、油谷浩幸、栗原由紀子、宮川-富田幸子、栗原裕基
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] シロアリ系統内における性決定遺伝子doublesexの遺伝子構造及び転写パターンの多様化2023

    • Author(s)
      藤原克斗、前川清人
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] 非tRNAにおける m3C修飾2023

    • Author(s)
      Shuhei Mitsutomi、Kenzui Taniue、Anzu Sugawara、Nobuyoshi Akimitsu
    • Organizer
      第46回日本分子生物学会年会
  • [Presentation] コーヒー摂取の習慣は血清尿酸値とは無関係に痛風リスクを減らす:日欧の人種集団におけるゲノムワイド関連解析の結果を活用したメンデルランダム化解析より2023

    • Author(s)
      河村優輔、中山昌喜、豊田優、中杤昌弘、清水聖子、四ノ宮成祥、岡田随象、松尾洋孝
    • Organizer
      第56回日本痛風・尿酸核酸学会
  • [Presentation] OAT10は生理学的に重要な尿酸再吸収輸送体である2023

    • Author(s)
      豊田優、高田龍平、河村優輔、中山昌喜、清水聖子、川口真、高田雄三、市田公美、四ノ宮成祥、小林靖、松尾洋孝
    • Organizer
      第56回日本痛風・尿酸核酸学会
  • [Presentation] narigoma enhancer controls left-right asymmetry of the anterior gut in Drosophila2023

    • Author(s)
      Florian Lucas Neugebauer、Takuya Nomura、Mikiko Inaki、Kenji Matsuno
    • Organizer
      第56回日本発生生物学会大会
  • [Presentation] コガネムシの構造色を生み出す 分子メカニズム2023

    • Author(s)
      神村 学
    • Organizer
      第59回日本節足動物発生学会大会
  • [Presentation] CDK4/6阻害薬の新規標的を見出す空間的遺伝子発現プラットフォーム構築に向けた転移性乳癌病理組織の説明可能な深層学習モデル2023

    • Author(s)
      谷岡 真樹 LI ZEHAO、仁科 卓也、中山 太陽、高田 健二、遠西 大輔、柳井 広之、諸岡 健一、枝園 忠彦
    • Organizer
      第5回日本メディカルAI学会学術集会
  • [Presentation] Estrogen Receptor Transcriptional Activity Induced By A Putative Estrogen-Responsive Region Near The Enkephalin Gene2023

    • Author(s)
      中村圭太、白根共太、石橋知佳、松島綾美
    • Organizer
      第60回ペプチド討論会
  • [Presentation] 国内流行型β溶血性レンサ球菌Streptococcus dysgalactiae の生化学的・遺伝子的特徴2023

    • Author(s)
      木ノ嶋航司、小倉康平、北村仁美、彼谷裕康、中村雅俊、岡本成史
    • Organizer
      第60回日本細菌学会中部支部総会
  • [Presentation] がん患者診療におけるCirculatingtumorDNA検査の意義2023

    • Author(s)
      岩谷 岳、遠藤 史隆、八重樫 瑞典、佐々木 教之、佐々木 智子、藤澤 良介、開 勇人、阿保 亜紀子、板持 広明、西塚 哲
    • Organizer
      第61回日本癌治療学会学術集会
  • [Presentation] 時空間解析による放射線治療による食道がん患者組織での免 疫環境変化の解析2023

    • Author(s)
      大吉 秀和
    • Organizer
      第61回日本癌治療学会学術集会
  • [Presentation] ラビリンチュラ類のステロール多様性を生み出す分子基盤とその機能的意義の解明2023

    • Author(s)
      石橋洋平、山口 舞、西田裕貴、林 雅弘、伊東 信、沖野 望
    • Organizer
      第65回日本脂質生化学会
  • [Presentation] 尿中尿酸排泄率と血清尿酸値の特異的な分布パターンに基づく腎性低尿酸血症の実践的な診断モデルの提案:日本人大規模集団における臨床遺伝疫学的解析より2023

    • Author(s)
      染谷真澄、河村優輔、中山昌喜、清水聖子、豊田優、鳥羽美帆、竹田圭吾、菊池理園、中嶌真由子、川口真、鈴木聡子、岩澤聡子、中島宏、角田正史、市田公美、若井建志、松尾恵太郎、四ノ宮成祥、松尾洋孝
    • Organizer
      第68回防衛衛生学会
  • [Presentation] 寄生蜂ニホンアソバラコマユバチの毒腺遺伝子の同定と作用機序の追究2023

    • Author(s)
      島田裕子、上山拓己、森一葉、丹羽、隆介
    • Organizer
      第69回トキシンシンポジウム
  • [Presentation] 造血におけるセレノプロテイン群によるレドックス制御機構2023

    • Author(s)
      青山有美、山嵜博未、西村耕太郎、高折晃史、井上大地.
    • Organizer
      第76回日本酸化ストレス学会学術集会
  • [Presentation] 縄文人骨ミトコンドリアゲノム全長配列にもとづく遺跡集団間の系統解析/ A phylogenetic analysis of inter-Jomon-site relationships based on complete mitochondrial genome sequences2023

    • Author(s)
      吉田光希
    • Organizer
      第77回日本人類学会大会
  • [Presentation] 分裂酵母胞子クロマチンの網羅的解析2023

    • Author(s)
      中山潤一
    • Organizer
      第7回北陸エピジェネティクス研究会
  • [Presentation] New RNA modifications induce malignancy for pancreatic cancer.2023

    • Author(s)
      大川眞裕香、今野雅允
    • Organizer
      第82回日本癌学会学術集会
  • [Presentation] 1 細胞解析を用いた放射線治療による食道癌患者組織での免疫学的変化の経時的解析2023

    • Author(s)
      大吉 秀和
    • Organizer
      第82回日本癌学会学術集会
  • [Presentation] Analysis of the "off-the-shelf" digital-PCR primer/probe library, OTS-1000ex for the evaluation of clinical usability2023

    • Author(s)
      Hiraki H、Iwaya T、Nishizuka S
    • Organizer
      第82回日本癌学会学術集会
  • [Presentation] Tumor-informed ctDNA monitoring in daily practice for patients with esophageal cancer2023

    • Author(s)
      Endo F、Iwaya T、Hiraki H、Abo A、Itamochi H、Nishizuka SS
    • Organizer
      第82回日本癌学会学術集会
  • [Presentation] タンキラーゼ阻害剤に耐性化した患者由来大腸がん細胞のベル型用量反応性機構2023

    • Author(s)
      森野峻、馬島哲夫、長山聡、白井文幸、片山量平、清宮啓之
    • Organizer
      第82回日本癌学会学術総会
  • [Presentation] A lncRNA associated with chronic gastritis and gastric cancer promotes stress granule formation and inhibits apoptosis.2023

    • Author(s)
      Hiroshi Kitajima、Reo Maruyama、Takeshi Niinuma、Akira Takasawa、Eiichiro Yamamoto、Kazuya Ishiguro、Ayano Yoshido、Masahiro Kai、Makoto Osanai、Takashi Tokino、Hiroshi Nakase、Hiromu Suzuki
    • Organizer
      第82回日本癌学会学術総会
  • [Presentation] Induction of mGluR1 expression and enhanced dependence on its signalling in lung cancer brain metastasis2023

    • Author(s)
      Eishu Hirata
    • Organizer
      第82回日本癌学会学術総会
  • [Presentation] 造血におけるセレノプロテイン群によるレドックス制御機構2023

    • Author(s)
      青山有美、山嵜博未、西村耕太郎、高折晃史、井上大地.
    • Organizer
      第85回日本血液学会学術集会
  • [Presentation] 樹状細胞分化におけるIrf8エンハンサーの物理的かつ機能的な協調作用によるIrf8発現の制御2023

    • Author(s)
      山﨑貴弥、西山 晃、黒木心和、田村智彦
    • Organizer
      第85回日本血液学会学術集会
  • [Presentation] Pan-cancer single T-cell landscape delineates distinct neoplastic follicular T-cell subsets2023

    • Author(s)
      安部佳亮
    • Organizer
      第85回日本血液学会学術集会
  • [Presentation] 変形性顎関節症モデルの新規開発と病態メカニズムの解明2023

    • Author(s)
      澁坂和大、前村美希、飯田萌、根岸宗一郎、坂井信裕、吉田寛、金英寛、槇宏太郎、矢野文子
    • Organizer
      第8回日本骨免疫学会
  • [Presentation] 新世代ビスフェノールのマウス胎仔期曝露により遺伝子発現と行動が変化する2023

    • Author(s)
      白根共太、多田悠亮、荒巻光汰、細瀬摩利、田川幸樹、松島綾美
    • Organizer
      第96回日本生化学会大会
  • [Presentation] ハチ目における脳高次中枢キノコ体を構成する ケニヨン細胞サブタイプの進化動態の解明2023

    • Author(s)
      桑原嵩佳、河野大輝、畠山正統、久保健雄
    • Organizer
      第96回日本生化学会大会
  • [Presentation] ヌクレオポリン融合遺伝子産物が形成する相分離構造体の機能2023

    • Author(s)
      岡正啓
    • Organizer
      第96回日本生化学会大会
  • [Presentation] 子宮内膜がんにおける腫瘍増殖因子Efpの機能解析2023

    • Author(s)
      堀江公仁子、池田和博、佐藤航、井上聡
    • Organizer
      第96回日本内分泌学会学術総会
  • [Presentation] サンゴの匂いでオニヒトデの行動及び遺伝子はどう変化するのか?2023

    • Author(s)
      鎌田 真壽、儀武 滉大、喜多村 鷹也、古井戸 樹、目﨑 拓真、本郷 悠貴、井口亮、 新村 芳人、安田 仁奈
    • Organizer
      日本サンゴ礁学会第26回大会
  • [Presentation] ビタミン C による DNA 脱メチル化促進作用がCD8 T 細胞(キラー T 細胞)に及ぼす影響の解明2023

    • Author(s)
      近藤健太、長谷川達矢、寺田晃士、口分田美奈、新田信人、縣保年
    • Organizer
      日本ビタミン学会第75回大会
  • [Presentation] オウトウショウジョウバエの産卵場所シフトに伴う雌雄形態の共進化とその遺伝基盤2023

    • Author(s)
      熊谷颯之、山本廉太、酒井杏花、佐藤愛莉、Pertiwi Rahayu、立﨑雅彪、田中健太郎、上村佳孝、高橋文
    • Organizer
      日本遺伝学会第95回大会
  • [Presentation] 染色体セントロメア領域の転写による染色体異常の発生メカニズム2023

    • Author(s)
      中川拓郎、Ran Xu、Crystal Tang
    • Organizer
      日本遺伝学会第95回大会
  • [Presentation] コムギ近縁野生種Aegilops umbellulata Zhuk.におけるうどんこ病菌侵入後抵抗性の原因遺伝子座の同定2023

    • Author(s)
      河村凌、岡田萌子、小村翔也、清水健太郎、西村和紗、井上喜博、吉田健太郎
    • Organizer
      日本育種学会第144回講演会
  • [Presentation] オオムギ出穂期突然変異体のエキソーム解析による原因遺伝子の探索及び遺伝解析2023

    • Author(s)
      大熊 眞歩、西村 和紗、門田 有希、加藤 鎌司、西田 英隆
    • Organizer
      日本育種学会第144回講演会
  • [Presentation] 珪藻の進化・繁栄の謎を握る未知の藻類:パルマ藻の生物学2023

    • Author(s)
      桑田 晃、 伴広輝 、中村 洋路、山田和正、佐藤晋也、緒方博之、一宮睦雄
    • Organizer
      日本海洋学会2023年度秋季大会
  • [Presentation] 日本産キセルガイのPhylogenomics(続報)2023

    • Author(s)
      石川彰人、スティアマルガ・デフィン、豊田敦、鈴木穣、上島励
    • Organizer
      日本貝類学会令和5年度大会
  • [Presentation] 植物の再生過程に関わるクロマチンリモデリング因子の機能解明2023

    • Author(s)
      堀江綾香、坂本卓也、佐藤輝、乾弥生、Slane Daniel、Diaz Mariana、鈴木穣、松永幸大
    • Organizer
      日本植物学会第87回大会
  • [Presentation] アワゴケ属(オオバコ科)陸生種と水陸両生種の比較ゲノム解析2023

    • Author(s)
      古賀皓之、ドル有生、塚谷裕一
    • Organizer
      日本植物学会第87回大会
  • [Presentation] ヒメミカヅキモの新規RWP-RK遺伝子の逆遺伝学的解析2023

    • Author(s)
      吉村美南、西山智明、関本弘之
    • Organizer
      日本植物学会第87回大会
  • [Presentation] ヒメミカヅキモBELL1遺伝子の有性生殖過程における発現解析と接合型における役割2023

    • Author(s)
      專田梨瑛子、川井 絢子、西山 智明、関本 弘之、榊原 恵子
    • Organizer
      日本植物学会第87回大会
  • [Presentation] シロイヌナズナの核内AS2ボディ形成における核小体の役割の解明2023

    • Author(s)
      安藤 沙友里、野元 美佳、岩川 秀和、大林 祝、山本 興太朗、多田 安臣、杉山 宗隆、笹部 美知子、町田 泰則、小島 晶子、町田 千代子
    • Organizer
      日本植物学会第87回大会
  • [Presentation] 植物のシュート再生能力獲得に関与するヒストンメチル化酵素の機能解析2023

    • Author(s)
      右橋 雅子、坂本 卓也、佐藤 輝、大矢 恵代、稲垣 宗一、鈴木 穣、角谷 徹仁、松永 幸大
    • Organizer
      日本植物学会第87回大会
  • [Presentation] ゼニゴケの分裂組織におけるERF転写因子の機能解析2023

    • Author(s)
      山屋 沙織、髙橋 剛、清末 知宏、平川 有宇樹
    • Organizer
      日本植物学会第87回大会
  • [Presentation] ゼニゴケJINGASA転写因子による幹細胞の分裂面と細胞アイデンティティーの制御機構2023

    • Author(s)
      髙橋 剛、清末 知宏、平川 有宇樹
    • Organizer
      日本植物学会第87回大会
  • [Presentation] 植物のシュート再生能力獲得に関与するエピジェネティック制御因子の機能解析2023

    • Author(s)
      右橋 雅子、坂本 卓也、佐藤 輝、大矢 恵代、稲垣 宗一、鈴木 穣、角谷 徹仁、松永 幸大
    • Organizer
      日本植物形態学会第35回総会・大会(札幌大会)
  • [Presentation] 植物の新規シュート再生系におけるクロマチンリモデリング因子の機能解析2023

    • Author(s)
      堀江綾香、坂本卓也、佐藤輝、乾弥生、鈴木穣、松永幸大
    • Organizer
      日本植物形態学会第35回総会・大会(札幌大会)
  • [Presentation] 縄文人における正の自然選択の検出/ Detecting signals of positive natural selection in the Jomon people2023

    • Author(s)
      渡部裕介
    • Organizer
      日本進化学会第25回大会
  • [Presentation] 地衣類イオウゴケにおける三者共生系パートナーの普遍性と可変性2023

    • Author(s)
      河野美恵子
    • Organizer
      日本進化学会第25回大会
  • [Presentation] ポソ湖において同所的種分化したメダカ属魚類のゲノム分化および表現型分化の遺伝的基盤2023

    • Author(s)
      柿岡諒、安齋賢、田中理映子、佐藤正祐、北野潤、木村亮介、山平寿智
    • Organizer
      日本進化学会第25回大会
  • [Presentation] オオバコ科アワゴケ属の水草とその近縁陸生種の比較ゲノム解析2023

    • Author(s)
      古賀皓之、ドル有生、塚谷裕一
    • Organizer
      日本進化学会第25回大会
  • [Presentation] キタグニコウキクサの長期成長様式解析による、短日依存性休眠誘導の日長認識部位と休眠芽発達機構の考察2023

    • Author(s)
      伊藤 照悟、小山 時隆
    • Organizer
      日本睡眠学会第45回定期学術集会・第30回日本時間生物学会学術大会合同大会
  • [Presentation] 光周反応を示す機能未知遺伝子の発現制御機構の解析2023

    • Author(s)
      中山友哉、吉村崇
    • Organizer
      日本睡眠学会第45回定期学術集会・第30回日本時間生物学会学術大会合同大会
  • [Presentation] ミナトカモジグサ-菌根菌共生系におけるリンの吸収・可給化機構の根局所的評価2023

    • Author(s)
      永山航平、熊石紀恵、市橋泰範、渡部敏裕、信濃卓郎、丸山隼人
    • Organizer
      日本土壌肥料学会2023年度愛媛大会
  • [Presentation] 施肥条件が水稲根圏窒素固定微生物に及ぼす影響とその品種間差2023

    • Author(s)
      天野真宏、増田曜子、西内俊策、土井一行、沢田こずえ、高橋宏和、中園幹生、村瀬 潤
    • Organizer
      日本土壌微生物学会 2023年度大会
  • [Presentation] 環形動物ヤマトヒメミミズの再生関連遺伝子系統比較解析2023

    • Author(s)
      野呂知加子、井上菜穂子、 斎藤稔、豊田敦、小林功
    • Organizer
      日本動物学会第94回山形大会
  • [Presentation] クワガタムシにおけるFat-Hippo経路遺伝子群の機能解析2023

    • Author(s)
      足守 泰成、伊東 良織、後藤 寛貴
    • Organizer
      日本動物学会第94回山形大会
  • [Presentation] クワガタムシにおけるオス特異的な大顎発達に関与する遺伝子群の探索2023

    • Author(s)
      大津 樹、道羅 英夫、後藤 寛貴
    • Organizer
      日本動物学会第94回山形大会
  • [Presentation] トンボの性分化と 紫外線反射の分子機構2023

    • Author(s)
      二橋亮
    • Organizer
      日本動物学会第94回山形大会
  • [Presentation] キムラグモのゲノム・クモ糸候補遺伝子からみるクモの大系統解析2023

    • Author(s)
      石渡智里、山本フィリップ、中村浩之、谷川明男、河野暢明
    • Organizer
      日本動物学会第94回山形大会
  • [Presentation] オオミジンコにおける性差を示すアイソフォームの同定2023

    • Author(s)
      加藤泰彦、 新田ジョエル、Christelle Alexa Perez、 Nikko Adhitama、 豊田敦、岩崎渉、渡邉肇
    • Organizer
      日本動物学会第94回山形大会
  • [Presentation] イトヨとニホンイトヨにおける雑種オス不妊メカニズムの解明に向けた、精巣組織および遺伝子発現の比較解析2023

    • Author(s)
      奥出絃太、細木拓也、豊田敦、北野潤
    • Organizer
      日本動物学会第94回山形大会
  • [Presentation] 性転換する魚類トラギスにおける両性生殖腺構造とシングルセル解析の試み2023

    • Author(s)
      八尾晃史、幸塚久典、鈴木穣、三浦徹
    • Organizer
      日本動物学会第94回山形大会
  • [Presentation] 昆虫ニコチン性アセチルコリン受容体の先端開拓:サブユニット構成とネオニコチノイド感受性2023

    • Author(s)
      小森勇磨、高山浩一、岡本直樹、清家和樹、吉成祐人、近藤周、谷本拓、丹羽隆介、David B. Sattelle、松田一彦
    • Organizer
      日本農芸化学会中部・関西支部合同大会
  • [Presentation] 大水深淡水湖を対象とした微生物網羅的環境ゲノムデータベースの構築2023

    • Author(s)
      岡崎友輔、大八木英夫、程木義邦、知北和久、齋藤圭、中野伸一
    • Organizer
      日本陸水学会第87回大会
  • [Presentation] 発生メカニズムに基づくトガリネズミ科の小臼歯と大臼歯の咬頭の相同性2023

    • Author(s)
      山中淳之、Yasin Haider、森田 航、後藤哲哉
    • Organizer
      日本哺乳類学会2023年度大会100周年記念沖縄大会
  • [Presentation] テンサイにおける新規稔性回復遺伝子の同定と機能解析2023

    • Author(s)
      赤澤亨歩、柏倉淳、松平洋明、北崎一義、久保友彦
    • Organizer
      令和5年度日本育種学会・日本作物学会北海道談話会講演会
  • [Book] 実験デザインからわかる シングルセル研究実践テキスト2024

    • Author(s)
      大倉永也、渡辺 亮、鈴木 穣/編
    • Total Pages
      323
    • Publisher
      羊土社
    • ISBN
      978-4-7581-2270-2
  • [Book] マルチオミクス データ駆動時代の疾患研究2023

    • Author(s)
      大澤 毅
    • Total Pages
      222
    • Publisher
      羊土社
    • ISBN
      978-4758104135
  • [Book] ゲノム編集の最新技術と医薬品・遺伝子治療・農業・水畜産物・有用物質生産への活用2023

    • Author(s)
      執筆者:60名、技術情報協会
    • Total Pages
      605
    • Publisher
      技術情報協会
    • ISBN
      978-4-86104-978-1
  • [Book] RNA Structure Prediction (Methods in molecular biology ; 2586) (Springer protocols)2023

    • Author(s)
      edited by Risa Karakida Kawaguchi、Junichi Iwakiri
    • Total Pages
      290
    • Publisher
      Humana Press
    • ISBN
      978-1-0716-2767-9
  • [Book] Smart Plant Breeding for Vegetable Crops in Post-genomics Era2023

    • Author(s)
      edited by Saurabh Singh
    • Total Pages
      426
    • Publisher
      Springer Nature Singapore
    • ISBN
      978-9811953668
  • [Book] ゲノムでたどる古代の日本列島2023

    • Author(s)
      斎藤成也 監修・著、山田康弘、太田博樹、内藤健、神澤秀明、菅裕 著
    • Total Pages
      287
    • Publisher
      東京書籍
    • ISBN
      978-4-487-81661-3
  • [Book] ゲノム編集技術 : 実験上のポイント/産業利用に向けた研究開発動向と安全性周知2023

    • Author(s)
      小西裕之、兵頭寿典 他39名
    • Total Pages
      315
    • Publisher
      情報機構
    • ISBN
      978-4-86502-242-1
  • [Book] 北海道考古学の最前線 : 今世紀における進展2023

    • Author(s)
      高瀬克範 編
    • Total Pages
      151
    • Publisher
      雄山閣
    • ISBN
      978-4-639-02913-7
  • [Book] Health Risk Assessment of Environmental Chemicals: pre-emptive and integrated approaches2023

    • Author(s)
      Masami Ishido
    • Total Pages
      303
    • Publisher
      Springer
    • ISBN
      978-981-99-1559-0
  • [Remarks] 領域ホームページ

    • URL

      https://www.genome-sci.jp/

  • [Remarks] DeepRaccess(RNAアクセシビリティ計算ソフトウェア)

    • URL

      https://github.com/hmdlab/DeepRaccess

  • [Remarks] GreenHill(染色体スケールでphasingをおこないつつscaffoldingを行うツール)

    • URL

      https://github.com/ShunOuchi/GreenHill

  • [Remarks] BootCellNet(scRNA-seq結果からの遺伝子制御ネットワーク推定・クラスタリング)

    • URL

      https://github.com/oursvallee/BootCellNet

  • [Remarks] DeepES(酵素反応アノテーションパイプライン)

    • URL

      https://github.com/yamada-lab/DeepES

  • [Patent(Industrial Property Rights)] もやもや病の発症を予測する末梢血バイオマーカーと治療標的の同定2023

    • Inventor(s)
      峰晴陽平
    • Industrial Property Rights Holder
      峰晴 陽平、小泉 昭夫、宮本 享、奥野 恭史
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2023-150115
  • [Patent(Industrial Property Rights)] 栄養パルス2023

    • Inventor(s)
      石井秀始、原知明、荒尾泰子、孟思昆、佐藤広陸、辻好子、斉藤佳子
    • Industrial Property Rights Holder
      国立大学法人大阪大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2023-158936
  • [Funded Workshop] 第14回国際ゲノム会議(14AGW)2023

URL: 

Published: 2024-12-25  

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