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2023 Fiscal Year Research-status Report

On Optimal Transport-based Statistical Measures for Graph Structured Data and Applications

Research Project

Project/Area Number 23K16939
Research InstitutionUniversity of Tsukuba

Principal Investigator

NGUYEN DAIHAI  筑波大学, システム情報系, 助教 (50968401)

Project Period (FY) 2023-04-01 – 2026-03-31
KeywordsGenerative models / Constrained domains / optimal transport
Outline of Annual Research Achievements

The research aims to develop optimal transport-based learning models for structured data, along with their related extensions and applications.

This year, our main focus has been on learning to generate structured data. Generating structured data, such as graphs, poses a significant challenge due to the constraints imposed on the generated samples. To address it, we formulated the problem of generating structured data as a distribution optimization problem on constrained domains. Then we developed a general framework based on the optimal transport theory to tackle this issue. We conducted an analysis of theoretical properties and convergence of the proposed, as well as experiments on synthetic and real world data sets to demonstrate its effectiveness in generating constrained samples.

Current Status of Research Progress
Current Status of Research Progress

1: Research has progressed more than it was originally planned.

Reason

We have achieved promising results in the topics of learning to generate structured data, with our research findings being published in top conferences and journals. Moving forward, we plan to further extend our research focus to include graph data and its applications.

Strategy for Future Research Activity

This year, our plan is to continue our efforts in developing optimal transport-based learning models tailored for graph-structured data, with a specific focus on their applications in Bioinformatics. Our research will encompass various domains within Bioinformatics, including molecular graphs, biological network data, and more.

Causes of Carryover

The incurring amount to be used next fiscal year is due to the purchase of items not yet required. We will use them this year as originally planned for the previous fiscal year.

  • Research Products

    (4 results)

All 2023

All Journal Article (2 results) (of which Peer Reviewed: 2 results) Presentation (2 results)

  • [Journal Article] Mirror variational transport: a particle-based algorithm for distributional optimization on constrained domains2023

    • Author(s)
      Nguyen Dai Hai、Sakurai Tetsuya
    • Journal Title

      Machine Learning

      Volume: 112 Pages: 2845~2869

    • DOI

      10.1007/s10994-023-06350-9

    • Peer Reviewed
  • [Journal Article] Differentiable optimization layers enhance GNN-based mitosis detection2023

    • Author(s)
      Zhang Haishan、Nguyen Dai Hai、Tsuda Koji
    • Journal Title

      Scientific Reports

      Volume: 13 Pages: -

    • DOI

      10.1038/s41598-023-41562-y

    • Peer Reviewed
  • [Presentation] Mirror variational transport: a particle-based algorithm for distributional optimization on constrained domains2023

    • Author(s)
      Nguyen Dai Hai
    • Organizer
      the European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD) 2023
  • [Presentation] On a linear fused Gromov-Wasserstein distance for graph structured data2023

    • Author(s)
      Nguyen Dai Hai
    • Organizer
      the International Workshop on Mining and Learning with Graphs, the European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD) 2023

URL: 

Published: 2024-12-25  

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