多様な半構造化データからのデータ構造推定

2015 Fiscal Year Annual Research Report

• Project/Area Number: 24300054
• Research Institution: Kyoto University
• Principal Investigator: 馬見塚 拓 京都大学, 化学研究所, 教授 (00346107)
• Project Period (FY): 2012-04-01 – 2016-03-31
• Keywords: 知識発見とデータマイニング

Outline of Annual Research Achievements

本研究では、グラフやネットワークに代表される半構造化データの様々な問題、中でもラベルプロパゲーションとリンク予測といった代表的な問題設定に関する研究の推進を目的としてきた。平成27年度は、手法開発よりもむしろの応用において成果を挙げた。特に、生命科学データへの応用等の実験で成果を検証し論文としてまとめ投稿した。

Research Progress Status

27年度が最終年度であるため、記入しない。

Strategy for Future Research Activity

27年度が最終年度であるため、記入しない。

Research Products

• [Int'l Joint Research] Lille 1 University(France)
  • Country Name: France
  • Counterpart Institution: Lille 1 University
• [Int'l Joint Research] Fudan University(中国)
  • Country Name: CHINA
  • Counterpart Institution: Fudan University
• [Journal Article] Mining Approximate Patterns with Frequent Locally Optimal Occurrences. (2016)
  • Author(s): Nakamura, A., Takigawa, I., Tosaka, H., Kudo, M. and Mamitsuka, H.
  • Journal Title: Discrete Applied Mathematics Volume: 200 Pages: 123-152
  • DOI: http://dx.doi.org/10.1016/j.dam.2015.07.002
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] Current Status and Prospects of Computational Resources for Natural Product Dereplication: A Review. (2016)
  • Author(s): Mohamed, A., Nguyen, C. H. and Mamitsuka, H.
  • Journal Title: Briefings in Bioinformatics Volume: 17 Pages: 309-321
  • DOI: http://dx.doi.org/10.1093/bib/bbv042
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] Non-negative Matrix Factorization with Auxiliary Information on Overlapping Groups. (2015)
  • Author(s): Shiga, M. and Mamitsuka, H.
  • Journal Title: IEEE Transactions on Knowledge and Data Engineering Volume: 27 Pages: 1615-1628
  • DOI: http://dx.doi.org/10.1109/TKDE.2014.2373361
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] MeSHLabeler: Improving the Accuracy of Large-scale MeSH indexing by Integrating Diverse Evidence. (2015)
  • Author(s): Liu, K., Peng, S., Wu, J., Zhai, C., Mamitsuka H. and Zhu S.
  • Journal Title: Bioinformatics Volume: 31 Pages: i339-i347
  • DOI: http://dx.doi.org/10.1093/bioinformatics/btv237
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] BMExpert: Mining MEDLINE for Finding Experts in Biomedical Domains Based on Language Model. (2015)
  • Author(s): Wang, B., Chen, X., Mamitsuka, H. and Zhu, S.
  • Journal Title: IEEE/ACM Transactions on Computational Biology and Bioinformatics Volume: 12 Pages: 1286-1294
  • DOI: http://dx.doi.org/10.1109/TCBB.2015.2430338
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] MeSHSim: An R/Bioconductor Package for Measuring Semantic Similarity over MeSH Headings and MEDLINE Documents (2015)
  • Author(s): Zhou, J., Shui, Y., Peng, S., Li, X., Mamitsuka, H. and Zhu, S.
  • Journal Title: Journal of Bioinformatics and Computational Biology Volume: 13 Pages: 1542002
  • DOI: http://dx.doi.org/10.1142/S0219720015420020
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] Evaluation of Serum-based Cancer Biomarkers: A Brief Review from a Clinical and Computational Viewpoint. (2015)
  • Author(s): Yotsukura, S. and Mamitsuka, H.
  • Journal Title: Critical Reviews in Oncology/Hematology Volume: 93 Pages: 103-115
  • DOI: http://dx.doi.org/10.1016/j.critrevonc.2014.10.002
  • Peer Reviewed / Acknowledgement Compliant
• [Presentation] Collaborative matrix factorization for predicting drug-target interactions (2015)
  • Author(s): Mamitsuka, H.
  • Organizer: CIM Workshop on Machine Learning
  • Place of Presentation: Uppsala, Sweden
  • Year and Date: 2015-10-08 – 2015-10-09
  • Invited
• [Presentation] Instance-wise Weighted Nonnegative Matrix Factorization for Aggregating Partitions with Locally Reliable Clusters. (2015)
  • Author(s): Zheng, X., Zhu, S., Gao, J. and Mamitsuka, H.
  • Organizer: 24th International Joint Conference on Artificial Intelligence (IJCAI 2015)
  • Place of Presentation: Buenos Aires, Argentina
  • Year and Date: 2015-07-25 – 2015-07-31
• [Presentation] MeSHLabeler: Improving the Accuracy of Large-scale MeSH indexing by Integrating Diverse Evidence (2015)
  • Author(s): Liu, K., Peng, S., Wu, J., Zhai, C., Mamitsuka H. and Zhu S.
  • Organizer: 23rd International Conference on Intelligent Systems for Molecular Biology (ISMB/ECCB 2015)
  • Place of Presentation: Dublin, Ireland
  • Year and Date: 2015-07-10 – 2015-07-14