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2013 Fiscal Year Annual Research Report

Elucidating the role of IgA in host-bacterial symbiosis in the gut

Research Project

Project/Area Number 25293118
Research Category

Grant-in-Aid for Scientific Research (B)

Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

ファガラサン シドニア  独立行政法人理化学研究所, 統合生命医科学研究センター, チームリーダー (00391970)

Project Period (FY) 2013-04-01 – 2016-03-31
Keywords免疫
Research Abstract

The main function of the immune system is to protect the host against pathogens, such as bacteria or viruses. However, unlike the systemic immune system, the gut immune system does not eliminate microorganisms but instead nourishes rich bacterial communities and establishes advanced symbiotic relationships. Not only that the gut bacteria are essential for nutrient processing, production of vitamins and protection against pathogens (through competition for space and nutrients) but the development and maturation of the immune system depends on these bacteria. The primary individual microbiota most likely reflects the maternal hand-over during or immediately after birth. However, the subsequent shaping of the microbial community landscape is likely driven by complex interactions with the host immune system, through a network of regulatory components involving both the innate and adaptive immune system. We proposed to dissect the contribution of the adaptive immune system in establishing the symbiosis between host and bacteria in the gut.

Current Status of Research Progress
Current Status of Research Progress

2: Research has progressed on the whole more than it was originally planned.

Reason

Using a series of immune-deficient mice and transfer systems, we revealed an important role of the adaptive immune system in regulating the diversity and structures of microbial. In short our findings could be summarized as follows: 1) mice deficient for B cells, T cells or both, fail to support complex bacterial communities in the gut; 2) the reconstitution of T cell-deficient mice with CD4+ T cells expressing the transcription factor Foxp3 (Foxp3+ T cells) restores both the diversity and the phylogenetic structure of bacteria; 3) Foxp3+ T cells helped diversification particularly of the non-virulent Clostridia species, which were recently reported to induce Foxp3. This means that not only Clostridia induce Foxp3, but that the Foxp3+ T cells contribute to the persistence and diversification of Clostridia of the Firmicutes (the most diverse bacterial species in both mice and humans); 4) Foxp3+ T cells act outside and inside germinal centers, by preventing inflammation and by regulating selection of IgAs, respectively; 5) the coating of bacteria with selected IgAs correlates directly with bacterial diversity and inversely with bacteria abundance (again, especially of Firmicutes); therefore when IgA are non-selected we see expansion of few bacterial species; 6) the microbiota induced by Foxp3+ T cells but not by naive T cells feed-back to the immune system and increase the Foxp3+ T cell pool and induce gut germinal centers and IgA, in what appears to be a dominant regulatory loop (dominant symbiosis).

Strategy for Future Research Activity

It will be important to further determine whether differences in adaptive immune system affect the resilience of bacterial communities after antibiotic treatment or dietary changes.
By resilience of bacterial communities we understand the amount of stress tolerated by the system before changing into a different equilibrium. We wish to find out whether the recovery of gut microbiota after antibiotic treatment depends on the initial diversity and composition of bacterial communities. In other words, whether diverse and balanced bacterial communities are more stable and recover quickly to their original status after antibiotics, whereas the unbalanced communities due to reduction of amount or quality of IgAs change into “alternative” pathogenic status after the same treatment. We will assess the IgA function for stabilizing consortia of commensal bacteria in the intestinal lumen and whether the unstable communities could be beneficially modified through dietary changes. Our work will be of fundamental importance for understanding the shifts in bacterial communities associated with various immunosuppressive therapies i.e. before transplantations. It is likely the recovery after such antibiotic and immune interventions will largely depend on the diversity and balance of preexisting bacterial communities.

Expenditure Plans for the Next FY Research Funding

購入を予定していた試薬が、海外メーカー元の品切れにより期限内に納入されなかったため。
試薬・消耗品を購入し、本年度研究計画を推進する。

  • Research Products

    (17 results)

All 2014 2013 Other

All Journal Article (5 results) (of which Peer Reviewed: 5 results) Presentation (12 results) (of which Invited: 11 results)

  • [Journal Article] Innate lymphoid cells integrate stromal and immunological signals to enhance antibody production by splenic marginal zone B cells2014

    • Author(s)
      Giuliana Magri, Michio Miyajima, Sabrina Bascones, Arthur Mortha, Irene Puga, Linda Cassis, Carolina M Barra, Laura Comerma, Aleksey Chudnovskiy, Maurizio Gentile, David Llige, Montserrat Cols, Sergi Serrano, Juan Ignacio Aróstegui, Manel Juan, Jordi Yagüe, Miriam Merad, Sidonia Fagarasan & Andrea Cerutti
    • Journal Title

      Nature Immunology

      Volume: 15 Pages: 354-364

    • DOI

      10.1038/ni.2830

    • Peer Reviewed
  • [Journal Article] A rheostat for immune responses: the unique properties of PD-1 and their advantages for clinical application2013

    • Author(s)
      Taku Okazaki, Shunsuke Chikuma, Yoshiko Iwai, Sidonia Fagarasan, Tasuku Honjo
    • Journal Title

      Nature Immunology

      Volume: 14 Pages: 1212-1218

    • DOI

      10.1038/ni.2762

    • Peer Reviewed
  • [Journal Article] Gut TFH and IgA: key players for regulation of bacterial communities and immune homeostasis2013

    • Author(s)
      Lucia M. Kato, Shimpei Kawamoto, Mikako Maruya, Sidonia Fagarasan
    • Journal Title

      Immunology and Cell Biology

      Volume: 92 Pages: 49-56

    • DOI

      10.1038/icb.2013.54

    • Peer Reviewed
  • [Journal Article] New Territory for T Follicular Helper Cells2013

    • Author(s)
      Carola G. Vinuesa, Sidonia Fagarasan, Chen Dong
    • Journal Title

      Immunity

      Volume: 39 Pages: 417-420

    • DOI

      10.1016/j.immuni.2013.09.001

    • Peer Reviewed
  • [Journal Article] Impaired selection of IgA and intestinal dysbiosis associated with PD-1-deficiency2013

    • Author(s)
      Mikako Maruya, Shimpei Kawamoto, Lucia M. Kato and Sidonia Fagarasan
    • Journal Title

      Gut Microbes

      Volume: 4 Pages: 165-171

    • DOI

      10.4161/gmic.23595

    • Peer Reviewed
  • [Presentation] Symbiotic regulatory loop between Foxp3+ T cells, IgA and gut microbiota2013

    • Author(s)
      Sidonia Fagarasan
    • Organizer
      第42回日本免疫学会学術集会
    • Place of Presentation
      幕張メッセ(千葉)
    • Year and Date
      20131211-20131213
    • Invited
  • [Presentation] Symbiotic regulatory loop between acquired immune system and gut microbiota2013

    • Author(s)
      Sidonia Fagarasan
    • Organizer
      The 5th LJI & IMS-RCAI Workshop
    • Place of Presentation
      理化学研究所(横浜)
    • Year and Date
      20131030-20131031
    • Invited
  • [Presentation] Symbiotic regulatory loop between acquired immune system and gut microbiota2013

    • Author(s)
      Sidonia Fagarasan
    • Organizer
      Symposium "Concepts in Systems Immunology"
    • Place of Presentation
      Wurzburg (ドイツ)
    • Year and Date
      20131002-20131003
    • Invited
  • [Presentation] Symbiotic regulatory loop between IgA and gut microbiota2013

    • Author(s)
      Sidonia Fagarasn
    • Organizer
      LT3: 3rd international Lymphoid Tissue Meeting
    • Place of Presentation
      Rotterdam(オランダ)
    • Year and Date
      20130915-20130917
    • Invited
  • [Presentation] The inhibitory receptor PD-1 regulates IgA selection and bacterial composition in the gut2013

    • Author(s)
      Shimpei Kawamoto
    • Organizer
      15th International Congress of Immunology (ICI)
    • Place of Presentation
      Milan(イタリア)
    • Year and Date
      20130822-20130827
  • [Presentation] Symbiotic regulatory loop between T cells, IgA and gut microbiota2013

    • Author(s)
      Sidonia Fagarasan
    • Organizer
      15th International Congress of Immunology (ICI)
    • Place of Presentation
      Milan(イタリア)
    • Year and Date
      20130822-20130827
    • Invited
  • [Presentation] Treg/Tfh in mucosal immunity2013

    • Author(s)
      Sidonia Fagarasan
    • Organizer
      Gordon Research Conferences
    • Place of Presentation
      The Chinese University of Hong Kong(香港)
    • Year and Date
      20130721-20130726
    • Invited
  • [Presentation] IgA synthesis: a form of functional immune adaptation extending beyond gut2013

    • Author(s)
      Sidonia Fagarasan
    • Organizer
      8th RCAI-JSI International Symposium on Immunology 2013
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Year and Date
      20130627-20130628
    • Invited
  • [Presentation] 抑制性受容体PD-1 が腸管IgA 産生および腸内細菌制御に与える影響の検討2013

    • Author(s)
      河本新平
    • Organizer
      第23 回日本サイトメトリー学会学術集会
    • Place of Presentation
      橘桜会館(東京)
    • Year and Date
      20130622-20130623
    • Invited
  • [Presentation] IgA synthesis: a form of functional immune adaptation extending beyond gut2013

    • Author(s)
      Sidonia Fagarasan
    • Organizer
      6th International Singapore Symposium of Immunology
    • Place of Presentation
      Matrix Auditorium, Biopolis(シンガポール)
    • Year and Date
      20130605-20130606
    • Invited
  • [Presentation] Foxp3+T細胞、IgA及び腸内細菌叢の間に見られる相互制御ループの解明

    • Author(s)
      河本新平
    • Organizer
      第23回東京免疫フォーラム
    • Place of Presentation
      東京大学医科学研究所(東京)
    • Invited
  • [Presentation] Symbiotic regulatory loop between Foxp3+ T cells, IgA and gut microbiota

    • Author(s)
      Sidonia Fagarasan
    • Organizer
      Seminar, IBI Institute of Bioengineering, Ecole Polytechnique Federale de Lausanne (EPFL)
    • Place of Presentation
      Lausanne(スイス)
    • Invited

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Published: 2015-05-28  

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