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Hadean Eon Microbiome

Planned Research

Project AreaHadean Bioscience
Project/Area Number 26106004
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionNational Institute of Advanced Industrial Science and Technology

Principal Investigator

KAMAGATA YOICHI  国立研究開発法人産業技術総合研究所, 生命工学領域, 研究部門付 (70356814)

Co-Investigator(Kenkyū-buntansha) 玉木 秀幸  国立研究開発法人産業技術総合研究所, 生命工学領域, 研究グループ付 (00421842)
西原 秀典  東京工業大学, 生命理工学院, 助教 (10450727)
鈴木 志野  国立研究開発法人海洋研究開発機構, 高知コア研究所, 特任主任研究員 (10557002)
柿澤 茂行  国立研究開発法人産業技術総合研究所, 生命工学領域, 主任研究員 (10588669)
黒川 顕  国立遺伝学研究所, 情報研究系, 教授 (20343246)
大島 拓  富山県立大学, 工学部, 准教授 (50346318)
Research Collaborator Mori Hiroshi  
Project Period (FY) 2014-07-10 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥245,570,000 (Direct Cost: ¥188,900,000、Indirect Cost: ¥56,670,000)
Fiscal Year 2018: ¥47,450,000 (Direct Cost: ¥36,500,000、Indirect Cost: ¥10,950,000)
Fiscal Year 2017: ¥47,450,000 (Direct Cost: ¥36,500,000、Indirect Cost: ¥10,950,000)
Fiscal Year 2016: ¥47,580,000 (Direct Cost: ¥36,600,000、Indirect Cost: ¥10,980,000)
Fiscal Year 2015: ¥47,320,000 (Direct Cost: ¥36,400,000、Indirect Cost: ¥10,920,000)
Fiscal Year 2014: ¥55,770,000 (Direct Cost: ¥42,900,000、Indirect Cost: ¥12,870,000)
Keywords冥王代 / 生命の起源 / 生命の誕生場 / 蛇紋岩熱水系 / 未知未培養微生物 / メタゲノム / 嫌気性微生物 / 原始エネルギー代謝 / OD1 / エネルギー代謝 / Wood-Ljungdahl 経路 / 人工生命系 / ATPase / 特殊環境微生物 / 生命進化 / 原始生命体 / 細菌 / 古細菌 / アルカリ環境 / 共生 / 微生物初期進化 / ミニマムゲノム / ゲノム解析 / 化学進化 / 難培養性微生物 / 初期エネルギー代謝 / 人工生命体 / 原始地球 / ゲノムインフォマティックス / 難培養微生物 / 独立栄養微生物
Outline of Final Research Achievements

Serpentinization is a process by which water reacts with ultramafic mantle rock to produce serpentine, ultrabasic fluid, and H2. Serpentinization should have been a common reaction on early earth and such geological settings are believed to be a cradle of life. The place where life emerged no longer exists, but the extant serpentinization site can be regarded as analog of such place. To trace the origin of life, microbial communities in serpentinization sites were analyzed using genome-centric approaches. Cells were harvested through filtration of water samples and used for further investigation. Meta-genomics revealed that the uncultivated microbes including the candidatus phyla OD1 and WS2 dominate the community. It also revealed the idiosyncrasy in their genome structures together with the presence of acetyl-CoA pathway, the primordial fashion of CO2 fixation and energy metabolism. Our research will provide further insights into the life in the earliest era.

Academic Significance and Societal Importance of the Research Achievements

生命の最初の誕生場は地球深くに沈み込み地上にはもはや存在しない。それでも鉱物と水から生命誕生に必要だった水素が生まれている地下熱水環境は少ないながらも現存しており、そうしたところに生存する現世の微生物のゲノム構造を解析したり、生理学的特徴を明らかにできれば、生命誕生の痕跡に触れることができるかもしれない。本研究はそうした人類の知的好奇心と想像力をかき立てるものである。また、生命を地球化学の反応から考察することは地球の歴史や生命の歴史を辿るばかりではなく、すべての生物反応は触媒反応である、という今日の化学工業やバイオテクノロジーの原点に直結する命題を与えるものである。

Report

(6 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (77 results)

All 2019 2018 2017 2016 2015 2014 Other

All Journal Article (38 results) (of which Int'l Joint Research: 10 results,  Peer Reviewed: 37 results,  Open Access: 24 results,  Acknowledgement Compliant: 6 results) Presentation (34 results) (of which Int'l Joint Research: 13 results,  Invited: 30 results) Book (2 results) Remarks (1 results) Patent(Industrial Property Rights) (1 results) (of which Overseas: 1 results) Funded Workshop (1 results)

  • [Journal Article] Reconsidering plasmid maintenance factors for computational plasmid design2019

    • Author(s)
      Yano H, Shintani M, Tomita M, Suzuki H, and Oshima T
    • Journal Title

      Comput. Struct. Biotechnol. J.

      Volume: 17 Pages: 70-81

    • DOI

      10.1016/j.csbj.2018.12.001

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Small RNA Esr41 inversely regulates expression of LEE and flagellar genes in enterohaemorrhagic Escherichia coli2018

    • Author(s)
      Sudo Naoki、Soma Akiko、Iyoda Sunao、Oshima Taku、Ohto Yui、Saito Kenta、Sekine Yasuhiko
    • Journal Title

      Microbiology

      Volume: 164 Issue: 5 Pages: 821-834

    • DOI

      10.1099/mic.0.000652

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Essential cellular modules for the proliferation of the primitive cell2018

    • Author(s)
      Higashi Koichi、Kawai Yoshikazu、Baba Tomoya、Kurokawa Ken、Oshima Taku
    • Journal Title

      Geoscience Frontiers

      Volume: 9 Issue: 4 Pages: 1155-1161

    • DOI

      10.1016/j.gsf.2016.11.013

    • Related Report
      2018 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] GeF-seq: A Simple Procedure for Base Pair Resolution ChIP-seq2018

    • Author(s)
      Chumsakul Onuma、Nakamura Kensuke、Ishikawa Shu、Oshima Taku
    • Journal Title

      Methods Mol Biol

      Volume: 1837 Pages: 33-47

    • DOI

      10.1007/978-1-4939-8675-0_3

    • ISBN
      9781493986743, 9781493986750
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Enlargement of Deinococcus grandis spheroplasts requires Mg2+ or Ca2+2018

    • Author(s)
      Koki Nishino, Yusuke Morita, Sawako Takahashi, Mai Okumura, Shusaku Shiratani, Kousuke Umemura, Issay Narumi, Chie Kondo, Ryosuke Ochiai, Taku Oshima, Hiromi Nishida
    • Journal Title

      Microbiology

      Volume: 164 Issue: 11 Pages: 1361-1371

    • DOI

      10.1099/mic.0.000716

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genomic and in-situ Transcriptomic Characterization of the Candidate Phylum NPL-UPL2 From Highly Alkaline Highly Reducing Serpentinized Groundwater2018

    • Author(s)
      Suzuki Shino、Nealson Kenneth H.、Ishii Shun’ichi
    • Journal Title

      Frontiers in Microbiology

      Volume: 9 Pages: 646-649

    • DOI

      10.3389/fmicb.2018.03141

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Tuning Gene Activity by Inducible and Targeted Regulation of Gene Expression in Minimal Bacterial Cells2018

    • Author(s)
      Mariscal Ana M.、Kakizawa Shigeyuki et al
    • Journal Title

      ACS Synthetic Biology

      Volume: 7 Issue: 6 Pages: 1538-1552

    • DOI

      10.1021/acssynbio.8b00028

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] VITCOMIC2: Visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing.2018

    • Author(s)
      Mori H, Maruyama T, Yano M, Yamada T, Kurokawa K
    • Journal Title

      BMC Syst. Biol.

      Volume: 12 Issue: S2 Pages: 30-30

    • DOI

      10.1186/s12918-018-0545-2

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence of the Nonheterocystous Cyanobacterium Pseudanabaena sp. ABRG5-32018

    • Author(s)
      Tajima Naoyuki、Kanesaki Yu、Sato Shusei、Yoshikawa Hirofumi、Maruyama Fumito、Kurokawa Ken、Ohta Hiroyuki、Nishizawa Tomoyasu、Asayama Munehiko、Sato Naoki
    • Journal Title

      Genome Announcements

      Volume: 6 Issue: 6

    • DOI

      10.1128/genomea.01608-17

    • NAID

      120006457123

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Differently localized lysophosphatidic acid acyltransferases crucial for triacylglycerol biosynthesis in the oleaginous alga Nannochloropsis2017

    • Author(s)
      Nobusawa Takashi、Hori Koichi、Mori Hiroshi、Kurokawa Ken、Ohta Hiroyuki
    • Journal Title

      The Plant Journal

      Volume: 90 Issue: 3 Pages: 547-559

    • DOI

      10.1111/tpj.13512

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genome-Wide Analysis of ResD, NsrR, and Fur Binding in Bacillus subtilis during Anaerobic Fermentative Growth by In Vivo Footprinting2017

    • Author(s)
      Chumsakul O, Anantsri DP, Quirke T, Oshima T, Nakamura K, Ishikawa S and Nakano MM
    • Journal Title

      Journal of Bacteriology

      Volume: 199 Issue: 13

    • DOI

      10.1128/jb.00086-17

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of H-box region mutants of WalK inert to the action of waldiomycin in <i>Bacillus subtilis</i>2017

    • Author(s)
      A. Kato, S. Ueda, T. Oshima, Y. Inukai, T. Okajima, M. Igarashi, Y. Eguchi and R. Utsumi
    • Journal Title

      The Journal of General and Applied Microbiology

      Volume: 63 Issue: 4 Pages: 212-221

    • DOI

      10.2323/jgam.2016.10.007

    • NAID

      130006067744

    • ISSN
      0022-1260, 1349-8037
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Unusual metabolic diversity of hyperalkaliphilic microbial communities associated with subterranean serpentinization at The Cedars2017

    • Author(s)
      Suzuki Shino、Ishii Shun'ichi、Hoshino Tatsuhiko、Rietze Amanda、Tenney Aaron、Morrill Penny L、Inagaki Fumio、Kuenen J Gijs、Nealson Kenneth H
    • Journal Title

      The ISME Journal

      Volume: 11 Issue: 11 Pages: 2584-2598

    • DOI

      10.1038/ismej.2017.111

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Water-rock Interaction Ascribed to Hyperalkaline Mineral Waters in the Cabeco de Vide Serpentinized Ultramafic Intrusive Massif (Central Portugal)2017

    • Author(s)
      Marques J.M.、Neves Maria O.、Miller Ana Z.、Rocha Carla、Vance Steve、Christensen Lance、Etiope Giuseppe、Carreira Paula M.、Suzuki Shino
    • Journal Title

      Procedia Earth and Planetary Science

      Volume: 17 Pages: 646-649

    • DOI

      10.1016/j.proeps.2016.12.173

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Petrothermobacter organivorans gen. nov., sp. nov., a novel thermophilic, strictly anaerobic bacterium of the phylum Deferribacteres isolated from a deep subsurface oil reservoir2017

    • Author(s)
      73.Tamazawa S, Mayumi D, Mochimaru H, Sakata S, Maeda H, Wakayama T, Ikarashi M, Kamagata Y, Tamaki H
    • Journal Title

      Int. J. Syst. Evol. Microbiol.

      Volume: 67 Issue: 10 Pages: 3982-3986

    • DOI

      10.1099/ijsem.0.002234

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Hidden diversity of ultra-small microorganisms2017

    • Author(s)
      中井 亮佑、玉木 秀幸
    • Journal Title

      Japanese Society of Microbial Ecology

      Volume: 32 Issue: 2 Pages: 43-50

    • DOI

      10.20709/jsmeja.32.2_43

    • NAID

      130006186005

    • ISSN
      2424-1989
    • Related Report
      2017 Annual Research Report
    • Open Access
  • [Journal Article] Phosphate-Catalyzed Hydrogen Peroxide Formation from Agar, Gellan, and κ-Carrageenan and Recovery of Microbial Cultivability via Catalase and Pyruvate2017

    • Author(s)
      Kawasaki Kosei、Kamagata Yoichi
    • Journal Title

      Applied and Environmental Microbiology

      Volume: 83 Issue: 21

    • DOI

      10.1128/aem.01366-17

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Restoration of the growth of Escherichia coli under K+-deficient conditions by Cs+ incorporation via the K+ transporter Kup2017

    • Author(s)
      Kato Souichiro、Kanata Yoshiki、Kitagawa Wataru、Sone Teruo、Asano Kozo、Kamagata Yoichi
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 195-195

    • DOI

      10.1038/s41598-017-02024-4

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Operation-driven heterogeneity and overlooked feed-associated populations in global anaerobic digester microbiome2017

    • Author(s)
      Mei Ran、Nobu Masaru K.、Narihiro Takashi、Kuroda Kyohei、 Sierra Julian、Wu Zhuoying、Ye Lin、Lee Patrick K.H.、Lee Po-Heng、van Lier Jules B.、McInerney Michael J.、Kamagata Yoichi、Liu Wen-Tso
    • Journal Title

      Water Research

      Volume: 124 Pages: 77-84

    • DOI

      10.1016/j.watres.2017.07.050

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Methane production from coal by a single methanogen2016

    • Author(s)
      Mayumi D, Mochimaru H, Tamaki H, Yamamoto K, Yoshioka H, Suzuki Y, Kamagata Y, Sakata S
    • Journal Title

      Science

      Volume: 354 Issue: 6309 Pages: 222-225

    • DOI

      10.1126/science.aaf8821

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Methanomicrobium antiquum sp. nov., a hydrogenotrophic methanogen isolated from deep sedimentary aquifers in a natural gas field2016

    • Author(s)
      Mochimaru H, Tamaki H, Katayama T, Imachi H, Sakata S and Kamagata Y
    • Journal Title

      International Journal of Systematic and Evoltionary Microbiology

      Volume: 66 Issue: 11 Pages: 4873-4877

    • DOI

      10.1099/ijsem.0.001444

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] In situ gene expression responsible for sulfide oxidation and CO2 fixation of an uncultured large sausage-shaped Aquificae bacterium in a sulfidic hot spring2016

    • Author(s)
      Tamazawa S, Yamamoto K, Takasaki K, Mitani Y, Hanada S, Kamagata Y, Tamaki H
    • Journal Title

      Microbes and Environments

      Volume: 31 Pages: 194-198

    • NAID

      130005158507

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Comparative Genomics of Syntrophic Branched-Chain Fatty Acid Degrading Bacteria2016

    • Author(s)
      Narihiro T, Nobu MK, Tamaki H, Kamagata Y, Sekiguchi Y, Liu WT
    • Journal Title

      Microbes and Environments

      Volume: 31 Issue: 3 Pages: 288-292

    • DOI

      10.1264/jsme2.ME16057

    • NAID

      130005265098

    • ISSN
      1342-6311, 1347-4405
    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] A key genetic factor for fucosyllactose utilization affects infant gut microbiota development2016

    • Author(s)
      Matsuki T, Yahagi K, Mori H, Matsumoto H, Hara T, Tajima S, Ogawa E, Kodama H, Yamamoto K, Yamada T, Matsumoto S, Kurokawa K
    • Journal Title

      Nature Communications

      Volume: 7 Issue: 1 Pages: 11939-11939

    • DOI

      10.1038/ncomms11939

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] High-affinity monoclonal IgA regulates gut microbiota and prevents colitis in mice.2016

    • Author(s)
      Okai S, Usui F, Yokota S, Hori-I Y, Hasegawa M, Nakamura T, Kurosawa M, Okada S, Yamamoto K, Nishiyama E, Mori H, Yamada T, Kurokawa K, Matsumoto S, Nanno M, Naito T, Watanabe Y, Kato T, Miyauchi E, Ohno H, Shinkura R.
    • Journal Title

      Nature Microbiology

      Volume: 1 Issue: 9 Pages: 16103-16103

    • DOI

      10.1038/nmicrobiol.2016.103

    • NAID

      120005818448

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Exploring the metabolic potential of microbial communities in ultra‐basic, reducing springs at The Cedars, CA, USA: Experimental evidence of microbial methanogenesis and heterotrophic acetogenesis2016

    • Author(s)
      Kohl L, Cumming, E, Cox A., Rietze A. Morrissey L. Lang QS, Richter A, Suzuki S, Nealson HK, Morrill LP
    • Journal Title

      Journal of Geophysical Research: Biogeosciences

      Volume: 121 Issue: 4 Pages: 1203-1220

    • DOI

      10.1002/2015jg003233

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] H-NS Facilitates Sequence Diversification of Horizontally Transferred DNAs during Their Integration in Host Chromosomes2016

    • Author(s)
      Higashi K., Tobe T., Kanai A., Uyar E., Ishikawa S., Suzuki Y., Ogasawara N., Kurokawa K., and Oshima T
    • Journal Title

      PLoS genetics

      Volume: 12 Issue: 1 Pages: e1005796-e1005796

    • DOI

      10.1371/journal.pgen.1005796

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] MetaSINEs: Broad Distribution of a Novel SINE Superfamily in Animals.2016

    • Author(s)
      Nishihara, H., Plazzi, F., Passamonti, M. and Okada, N.
    • Journal Title

      Genome Biology and Evolution

      Volume: 8 Issue: 3 Pages: 528-539

    • DOI

      10.1093/gbe/evw029

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] The role of genome sequencing in phytoplasma research2015

    • Author(s)
      Kakizawa S., Yoneda Y.
    • Journal Title

      Phytopathogenic Mollicutes

      Volume: 5 Issue: 1 Pages: 19-24

    • DOI

      10.5958/2249-4677.2015.00058.4

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe.2015

    • Author(s)
      Wang T, Mori H, Zhang C, Kurokawa K, Xing X, Yamada T
    • Journal Title

      BMC Bioinformatics

      Volume: 16 Issue: 1 Pages: 96-96

    • DOI

      10.1186/s12859-015-0499-y

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] FuncTree: Functional Analysis and Visualization for Large-Scale Omics Data.2015

    • Author(s)
      Uchiyama T, Irie M, Mori H, Kurokawa K, Yamada T.
    • Journal Title

      PLoS One.

      Volume: 10 Issue: 5 Pages: e0126967-e0126967

    • DOI

      10.1371/journal.pone.0126967

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Physicochemical impacts associated with natural gas development on methanogenesis in deep sand aquifers2015

    • Author(s)
      Taiki Katayama, Hideyoshi Yoshioka, Yoshiyuki Muramoto, Jun Usami, Kazuhiro Fujiwara, Satoshi Yoshida, Yoichi Kamagata, Susumu Sakata
    • Journal Title

      The ISME Journal

      Volume: 9 Issue: 2 Pages: 436-446

    • DOI

      10.1038/ismej.2014.140

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Isolation of microorganisms involved in reduction of crystalline iron (III) oxides in natural environments2015

    • Author(s)
      Hori T., Aoyagi T., Itoh, H., Narihiro T., Oikawa A., Suzuki K., Ogata A., Friedrich, M.W., Conrad R., Kamagata Y.
    • Journal Title

      Frontiers in Microbiology

      Volume: 6

    • DOI

      10.3389/fmicb.2015.00386

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Keys to cultivating uncultured microbes: elaborate enrichment strategies and resuscitation of dormant cells2015

    • Author(s)
      Kamagata Y.
    • Journal Title

      Microbes and Environments

      Volume: 30 Issue: 4 Pages: 289-290

    • DOI

      10.1264/jsme2.me3004rh

    • NAID

      130005116032

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Isolation of acetogenic bacteria that induce biocorrrosion by utilizing metallic irons as the sole electron donor2015

    • Author(s)
      Kato, S., I. Yumoto, Y. Kamagata
    • Journal Title

      Applied and Environmental Microbiology

      Volume: 81 Issue: 1 Pages: 67-73

    • DOI

      10.1128/aem.02767-14

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] CLAST: CUDA implemented large-scale alignment search tool.2014

    • Author(s)
      Yano M, Mori H, Akiyama Y, Yamada T, Kurokawa K
    • Journal Title

      BMC Bioinformatics

      Volume: 15 Issue: 1 Pages: 406-406

    • DOI

      10.1186/s12859-014-0406-y

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The genomic substrate for adaptive radiation in African cichlid fish2014

    • Author(s)
      Brawand D et al. (Nikaido M 75人中45番目)
    • Journal Title

      Nature

      Volume: 513 Issue: 7518 Pages: 375-381

    • DOI

      10.1038/nature13726

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A hidden pitfall in agar media preparation undermines cultivability of microorganisms,2014

    • Author(s)
      Tanaka T, Kawasaki K, Daimon S, Kitagawa W, Yamamoto K, Tamaki H, Tanaka M, Nakatsu CH, Kamagata Y
    • Journal Title

      Applied and Environmental Microbiology

      Volume: 80 Issue: 24 Pages: 7659-7666

    • DOI

      10.1128/aem.02741-14

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] L型大腸菌の増殖機構の解明2019

    • Author(s)
      大島拓
    • Organizer
      第92回日本細菌学会総会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 冥王代類似環境微生物:環境ゲノム情報と培養技術で紐解くその存在と未知機能2018

    • Author(s)
      玉木秀幸
    • Organizer
      日本進化学会第20回大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 未知の微生物を”培養”して深淵な生物機能を探る2018

    • Author(s)
      玉木秀幸
    • Organizer
      日本微生物生態学会第32回大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 岩に生かされる生命たち:地球深部強アルカリ環境をすみかとする微生物の生き様に迫る2018

    • Author(s)
      鈴木志野
    • Organizer
      第61回海中海底工学フォーラム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Unusual metabolic strategies identified in a hyperalkaliphilic microbial community associated with the serpentinization2018

    • Author(s)
      鈴木志野
    • Organizer
      JpGU2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Microbial adaptive evolution to the oxic/anoxic interfaces in serpentinizing systems2018

    • Author(s)
      鈴木志野
    • Organizer
      JpGU2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ミニマムゲノム細菌の遺伝子機能解明に向けたCRIPSRi による遺伝子ノックダウン系の開発2018

    • Author(s)
      柿澤茂行、田中 一己、Yo Suzuki
    • Organizer
      日本進化学会第20回大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 未知の微生物を”培養”して新たな生命機能を探る2018

    • Author(s)
      玉木秀幸
    • Organizer
      日本細菌学会総会シンポジウム
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 培養とゲノミクスで紐解く生命の生存戦略2018

    • Author(s)
      鈴木志野
    • Organizer
      日本細菌学会総会シンポジウム
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] なぜ多くの微生物は固体培地で生育しないのか?2018

    • Author(s)
      鎌形洋一
    • Organizer
      日本細菌学会総会シンポジウム
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 休眠・覚醒・培養手法の研究を通して見えた微生物の生き様2018

    • Author(s)
      鎌形洋一
    • Organizer
      日本農芸化学会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 眠れる微生物の秘めた力2017

    • Author(s)
      玉木秀幸
    • Organizer
      日本細菌学会総会シンポジウム
    • Place of Presentation
      東北大学(仙台市)
    • Year and Date
      2017-03-20
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Cultivation and metagenomics of yet-to-be cultured acetogens in natural ecosystems including terrestrial serpentinizing hot springs2017

    • Author(s)
      鎌形洋一、玉木秀幸
    • Organizer
      Workshop on The Origin of Life
    • Place of Presentation
      New Castle University Upon Tyne (英国)
    • Year and Date
      2017-01-18
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ミニマムゲノム細菌の遺伝子機能解明に向けたCRIPSRiによる遺伝子ノックダウン2017

    • Author(s)
      S. Kakizawa, K Tanaka, Y Suzuki
    • Organizer
      日本ゲノム微生物学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 未知の微生物を”培養”して生命の新機能を探る2017

    • Author(s)
      玉木秀幸
    • Organizer
      環境微生物系合同大会2017 シンポジウム
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 培養技術と環境ゲノム情報で紐解く未知アーキアの新機能2017

    • Author(s)
      玉木秀幸
    • Organizer
      日本ゲノム微生物学会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] シス制御システムの進化をもたらした転移因子の重要性2017

    • Author(s)
      西原秀典
    • Organizer
      日本遺伝学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 転移因子レトロトランスポゾンが拡大させたシス制御配列の多様性2017

    • Author(s)
      西原秀典
    • Organizer
      ConBio2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] Microbial community associated with subterranean serpentinization2017

    • Author(s)
      鈴木志野
    • Organizer
      KIOST international seminar 2017 Symposium
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Metabolic Diversity of Hyperalkaliphilic Microbial Communities Associated with Serpentinization at The Cedars2017

    • Author(s)
      鈴木志野
    • Organizer
      Goldschmidt 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Microbial adaptation to the extreme environment revealed by genome-centric metagenomics2017

    • Author(s)
      鈴木志野
    • Organizer
      国際ゲノム会議
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Novel methanogens: Looking into the depths of syntrophs and methanogens that have eluded cultivation2017

    • Author(s)
      鎌形洋一
    • Organizer
      International Conference on Biogas Microorganisms
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Factors affecting cultivability of microorganisms on solidified media2017

    • Author(s)
      鎌形洋一
    • Organizer
      International Union of Microbiological Societies
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Why do microbes dislike growing on agar?2017

    • Author(s)
      鎌形洋一
    • Organizer
      Annual Conference of Chinese Society of Microbial Ecology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 地下根源有機物からの生物的メタン生成2017

    • Author(s)
      鎌形洋一
    • Organizer
      石油学会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Why microbes do not like to grow on agar?2017

    • Author(s)
      鎌形洋一
    • Organizer
      Taiwan Society of Microbial Ecology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Why do microbes dislike growing on agar?2017

    • Author(s)
      鎌形洋一
    • Organizer
      Sendai Asian forum on environmental microbiology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Syntrophy vs individualism2016

    • Author(s)
      鎌形洋一
    • Organizer
      The 9th Asia-Pacific Landfill Symposium Syntrophy session
    • Place of Presentation
      Hong Kong University(香港・中国)
    • Year and Date
      2016-11-10
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Comparative genomics identifies Serpentinomonas adaptation to the calcium-rich highly-alkaline serpentinizing ecosystem2016

    • Author(s)
      Shino Suzuki, Shunichi Ishii, Yuichi Hanada, Lina J. Bird, J. Gijs Kuenen, Kenneth H. Nealson
    • Organizer
      Extremophiles
    • Place of Presentation
      京都大学(京都市)
    • Year and Date
      2016-09-15
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Metabolic Diversity of Microorganisms Associated with Active Subsurface Serpentinization2016

    • Author(s)
      Shino Suzuki, Shunichi Ishii, Yuichi Hanada, Lina J. Bird, J. Gijs Kuenen, Kenneth H. Nealson
    • Organizer
      Goldschmidt 2016
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Year and Date
      2016-06-29
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 全ゲノム操作による生命機能の解明: マイコプラズマと冥王代生命学2015

    • Author(s)
      柿澤茂行
    • Organizer
      札幌微生物研究者合同セミナー
    • Place of Presentation
      北海道大学
    • Year and Date
      2015-12-10
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 環境オミクス情報と培養技術で解き明かすその存在と未知機能2015

    • Author(s)
      玉木秀幸
    • Organizer
      2015年日本バイオインフォマティクス学会年会
    • Place of Presentation
      京都大学宇治キャンパス
    • Year and Date
      2015-10-30
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] ファイトプラズマの生態と進化2015

    • Author(s)
      柿澤茂行
    • Organizer
      日本微生物生態学会第30 回大会
    • Place of Presentation
      茨城県土浦市
    • Year and Date
      2015-10-19
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 深部地下高温油層環境に生息する新規Deferribacteres門酢酸酸化細菌の分離と生理生態機能解析2015

    • Author(s)
      玉澤聡、眞弓大介、持丸華子、坂田将、前田治男、若山樹、五十嵐雅之、鎌形洋一、玉木秀幸
    • Organizer
      日本微生物生態学会第30回大会
    • Place of Presentation
      茨城県土浦市
    • Year and Date
      2015-10-18
    • Related Report
      2015 Annual Research Report
  • [Book] Anaerobic Cultivation (in Manual of Environmental Microbiology, Fourth Edition)2016

    • Author(s)
      Narihiro T., Kamagata Y.
    • Total Pages
      10
    • Publisher
      American Society for Microbiology
    • Related Report
      2015 Annual Research Report
  • [Book] Syntrophy in anaerobic digestion (in Anaerobic Biotechnology)2015

    • Author(s)
      Kamagata Y.
    • Total Pages
      18
    • Publisher
      World Scientific
    • Related Report
      2015 Annual Research Report
  • [Remarks] 冥王代生命学の創成

    • URL

      http://www.hadean.jp

    • Related Report
      2016 Annual Research Report
  • [Patent(Industrial Property Rights)] 情報処理システム、情報処理方法、及びプログラム2017

    • Inventor(s)
      黒川顕、東光一、森宙史
    • Industrial Property Rights Holder
      黒川顕、東光一、森宙史
    • Industrial Property Rights Type
      特許
    • Filing Date
      2017
    • Related Report
      2017 Annual Research Report
    • Overseas
  • [Funded Workshop] Workshop on The Origin of Life2017

    • Place of Presentation
      New Castle Upon Tyne(英国)
    • Related Report
      2016 Annual Research Report

URL: 

Published: 2014-11-20   Modified: 2020-03-30  

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