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Development of automated gene diagnoses using capillary electrophoresis

Research Project

Project/Area Number 07557017
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section展開研究
Research Field Pathological medical chemistry
Research InstitutionTokyo Medical and Dental University

Principal Investigator

YUASA Yasuhito  Tokyo Medical and Dental University, Department of Hygiene and Oncology, Professor, 医学部, 教授 (80111558)

Co-Investigator(Kenkyū-buntansha) SUEHIRO Takeshi  Nippon Bio-Rad Laboratories, Technical Support Planning Department Manager, 企画部, 室長
Project Period (FY) 1995 – 1997
Project Status Completed (Fiscal Year 1997)
Budget Amount *help
¥15,600,000 (Direct Cost: ¥15,600,000)
Fiscal Year 1997: ¥2,000,000 (Direct Cost: ¥2,000,000)
Fiscal Year 1996: ¥2,300,000 (Direct Cost: ¥2,300,000)
Fiscal Year 1995: ¥11,300,000 (Direct Cost: ¥11,300,000)
Keywordscapillary electrophoresis / gene diagnosis / PCR / mutation / microsatellite / colorectal cancer / SSCP
Research Abstract

We developed a method to analyze a polyadenine tract, the (A)_<10> repeat, within the cysteine-rich domain of the transforming growth factor-beta (TGF-beta) type II receptor gene using a non-gel-sieving capillary electrophoresis technique and applied it to the DNA diagnosis of colorectal cancers. This method consists of single-strand DNA amplification of the (A)_<10> repeat by an asymmetric PCR technique and capillary electrophoresis. A higher concentration of dATP in the PCR reaction mixture led to more specific amplification of the (A)_<10> repeat. Under the optimal electrophoretic conditions, one nucleotide difference could be determined in 8 to 32 nucleotides. One or two base deletions of the (A)_<10> repeat in colorectal cancers could be detected under these conditions within 30 min, and the results coincided with those obtained on DNA sequencing analyzes. According to a sensitivity study, we could detect the deleted sequence if it was present in 12.5% or more of the wild-type allele. The reproducibility of this technique was satisfactory because the intraassay imprecision (CV) (n=10) was 1.4%. These results indicate that capillary electrophoretic analysis of small repeated sequences results in easier handling and more feasible automation, com-pared with conventional gel electrophoretic analysis.

Report

(4 results)
  • 1997 Annual Research Report   Final Research Report Summary
  • 1996 Annual Research Report
  • 1995 Annual Research Report
  • Research Products

    (35 results)

All Other

All Publications (35 results)

  • [Publications] Oto M, er al.: "Analysis of polyadenine tract of the TGF-β type II receptor gene in colorectal cancers by non-gel sieving capillary electrophoresis" Clinical Chemistry. 43. 759-763 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Akiyama Y, et al.: "Transforming growth factor-β typeII receptor gene mutations in adenomas from hereditary nonpolyposis colorectal cancer patients." Gastroenterology. 112. 33-39 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Akiyama Y, et al.: "Gerinline mutation of the hMSH6/GTBP gene in an atypical herditary nonpolyposis colorectal cancer kindred." Cancer Research. 57. 3920-3923 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Akiyama Y, et al.: "Frequent somatic mutations of hMSH3 with reference to microsatellite instability in hereditarynonpolyposis colorectal cancers." Biochem.Biophys.Res.Commun.236. 248-252 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Arai T, et al.: "Genomic structure of the human Smad3 gene and its infrequent alterations in colorectal cancers." Cancer Letters. 122. 157-163 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Yagi OK, et al.: "Proapoptotic gene BAX is frequently mutatedin hereditary nonpolyposis colorectal cancers but not in adenomas." Gastroenterology. 114. 268-274 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 湯浅 保仁: "無敵のバイオテクニカルシリーズPCR実験ノートDNA多型,変異の解析" 谷口武利編, 12 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Oto M,Koguchi A,Yuasa Y: "Analysis of a polyadenine tract of the TGF-beta type II receptor gene in colorectal cancers by non-gel sieving capillary electrophoresis" Clinical Chemistry. 43. 759-763 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Akiyama Y,Iwanaga R,Saitoh K,Shiba K,Ushio K,Ikeda E,Iwama T,Nomizu T,Yuasa Y: "Transforming growth factor-beta type II receptor gene mutations in adenomas from hereditary nonpolyposis colorectal cancer patients" Gastroenterology. 112. 33-39 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Hori H,Kawano T,Endo M,Yuasa Y: "Genetic polymorphisms of tabacco-and alcohol-related metabolizing enaymes and human esophageal squamous cell carcinoma susceptivility" Journal of Clinical Gastroenterology. 25. 568-575 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Akiyama Y,Tsubouchi N,Yuasa Y: "Frequent somatic mutations of hMSH3 with reference to microsatellite instability in hereditary nonpolyposis colorectal cancers" Biochim.Biophys.Res.Commun. 236. 248-252 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Akiyama Y,Sato H,Yamada T,Nagasaki H,Tsuchiya A,Abe R,Yuasa Y: "Germline mutation of the hMSH6/GTBP gene in an atypical hereditary nonpolyposis colorectal cancer kindred" Cancer Research. 57. 3920-3923 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Arai T,Akiyama Y,Okabe S,Ando M,Endo M,Yuasa Y: "Genomic structure of the human Smad3 gene and its infrequent alterations in colorectal cancers" Cancer Letters. 122. 157-163 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Yagi OK,Akiyama Y,Nomizu T,Iwama T,Endo M,Yuasa Y: "Proapoptoric gene BAX is frequently mutated in hereditary nonpolyposis colorectal cancers but not in adenomas" Gastroenterology. 114. 268-274 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] Oto M, et al.: "Analysis of a polyadenine tract of the TGF-β type II receptor gene in colorectal cancers by non-gel sieving capillary electrophoresis." Clinical Chemistry. 43. 759-763 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Akiyama Y, et al.: "Transforming growth factor-β type II receptor gene mutations in adenomas from hereditary nonpolyposis colorectal cancer patients." Gastroenterology. 112. 33-39 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Akiyama Y, et al.: "Germline mutation of the hMSH6/GTBP gene in an atypical hereditary nonpolyposis colorectal cancer kindred." Cancer Research. 57. 3920-3923 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Akiyama Y, et al.: "Frequent somatic mutations of hMSH3 with reference to microsatellite instability in hereditary nonpolyposis colorectal cancers." Biochem.Biophys.Res.Commun.236. 248-252 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Arai T, et al.: "Genomic structure of the human Smad3 gene and its infrequent alterations in colorectal cancers." Cancer Letters. 122. 157-163 (1998)

    • Related Report
      1997 Annual Research Report
  • [Publications] Yagi OK, et al.: "Proapoptotic gene BAX is frequently mutated in hereditary nonpolyposis colorectal cancers but not in adenomas." Gastroenterology. 114. 268-274 (1998)

    • Related Report
      1997 Annual Research Report
  • [Publications] 湯浅保仁: "無敵のバイオテクニカルシリーズ[PCR実験ノート]『DNA多型,変異の解析』" 谷口武利編, 12 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] Oto,M.,et al.: "Analysis of a polyadenine tract of the TGF-β type II receptor gene in colorectal cancers by non-gel sieving capillary electrophoresis." Clinical Chemistry. (in press.). (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Akiyama,Y.,et al.: "Transforming growth factor-β type II receptor gene mutations in adenomas from hereditary nonpolyposis colorectal cancer patients." Gastroenterology. 112. 33-39 (1997)

    • Related Report
      1996 Annual Research Report
  • [Publications] Akiyama,Y.,et al.: "Mutations of the transforming growth factor-β type II receptor gene are strongly related to sporadic proximal colon cancers with microsatellite instability." Cancer. 78. 2478-2484 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Lu,S.-L.,et al.: "Genomic structure of the transforming growth factor β type II receptor gene and its mutations in hereditary nonpolyposis colorectal cancers." Cancer Reserach. 56. 4595-4598 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Akiyama,Y.,et al.: "Frequent microsatellite instabilities and analyses of the related genes in familial gastric cancers." Jpn.J.Cancer Res.87. 595-601 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Lu,S.-L.,et al.: "Loss or somatic mutations of hMSH2 occur in hereditary nonpolyposis colorectal cancers with hMSH2 germline mutations." Jpn.J.Cancer Res.87. 279-287 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] Oto,M.,et al.: "Microsatellite instability in cancer identified by non-gel sieving capillary electrophoresis." Clinical Chemistry. 41. 482-483 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Oto,M.,et al.: "DNA hybridization analysis of PCR products by non-gel sieving capillary electrophoresis." PCR Methods & Applications. 4. 303-304 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Oto,M.,et al.: "Indenitfication of mutated p53 in cancer by non-gel sieving capillary electrophoretic SSCP analysis." Clinical Chemistry. 41. 1787-1788 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Wu,C.,et al.: "Polymorphisms and proble lack of mutation in a human mutT homolog,hMTH1,in hereditary nonpolyposis colorectal cancer." Biochem.Biophys.Res.Commun.214. 1239-1245 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Lu,S.-L.,et al.: "Mutations of the transforming growth factor-β type II receptor gene and genomic instability in hereditary nonpolyposis colorectal cancer." Biochem.Biophys.Res.Commun.216. 452-457 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Homma,M.K.,et al.: "Growth inhibition by phospholipase C inhibitor peptides of colorectal carcinoma cells derived from familial adenomatous polyposis." Cell Growth & Differentation. (in press).

    • Related Report
      1995 Annual Research Report
  • [Publications] ed.Baba,S.,et al.: "A New Strategy for Treatment of Hereditary Colorectal Cancer." Churchill Livingstone Japan(in press),

    • Related Report
      1995 Annual Research Report
  • [Publications] 古庄湯浅 他 編集: "臨床DNA診断法" 金原出版, 1134 (1995)

    • Related Report
      1995 Annual Research Report

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Published: 1995-04-01   Modified: 2016-04-21  

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