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Studies of Isoprenoid Biosynthesis in Escherichia coli-Further clarification of metabolic pathway and it's regulation mechanism

Research Project

Project/Area Number 08458169
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Bioorganic chemistry
Research InstitutionTohoku Univ.

Principal Investigator

NISHINO Tokuzo  Tohoku Univ., Graduate School of Engineering, Professor, 大学院・工学研究科, 教授 (90005827)

Co-Investigator(Kenkyū-buntansha) 大沼 信一  東北大学, 工学部, 助手 (30221831)
Project Period (FY) 1996 – 1997
Project Status Completed (Fiscal Year 1997)
Budget Amount *help
¥8,700,000 (Direct Cost: ¥8,700,000)
Fiscal Year 1997: ¥1,200,000 (Direct Cost: ¥1,200,000)
Fiscal Year 1996: ¥7,500,000 (Direct Cost: ¥7,500,000)
KeywordsPrenyltransferase / farnesyl diphosphate / Escherichia coli / mutagenesis / geranylgeranyl diphosphate / ファルネシルニリン酸
Research Abstract

1.We detected two novel prenyltransferase activities in a farnesyl transferase null mutant of Escherichia coli. Although the amounts of these enzymes are slight, they are thought to substitute for the detected enzyme. They can be purified by adding a detergent into buffer solution, like membrane proteins. one of them was characterized as octaprenyl diphosphate synthase, and the other was shown to synthesize farnesyl diphosphate and longer prenyl diphosphates
2.We tried to elucidate the mechanism by which prenyltransferases decided chain length of their products, aiming at production of prenyl diphosphates in Escherichia coli. Using random mutagenesis technique, we succeeded to change chain length of the products.of prenyltransferases derived from a thermophilic eubacteria and a high-degree thermophilic archaea, and revealed that an amino acid residue which locates on the fifth position before the first of two aspartate-rich motifs, which are highly conserved between prenyltransferases, is important for the mechanism of product detemination. They were the first reports on the artificial control of the product's chain length of prenyltransferases. Besides, we compared surrounding regions of the important amino acid residues of various prenyltransferases and mutagenized them according to the result of comparison. Therefore we found that the mechanisms of product determination of prenyltransferases can be differentiated phylogenctically.

Report

(3 results)
  • 1997 Annual Research Report   Final Research Report Summary
  • 1996 Annual Research Report
  • Research Products

    (37 results)

All Other

All Publications (37 results)

  • [Publications] S.-i.Ohnuma et al.: "Identification and Chardcterization of Geranylgeraniol Kinase and Geranylgeranyl Phosphate Kinase from Archaebacterium Sulfolobus acidocaldarius" J.Biochem.119. 541-547 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] S.Fujisaki et al.: "Cloning of a Gene from Escherichia coli that Confers Pesistance to Fosmidomycin as a Consequence of Amplification" Gene. 175. 83-87 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] S.-i.Ohnuma et al.: "Conversion from Farnesyl Diphosphate Synthase to Geranylgoranyl Diphosphate Synthase by Random Chemical Mutagenesis" J.Biol.chem.271. 10087-10095 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Okada et al.: "Polyprenyl Diphosphate Synthase Essentially Defines the Length of the Side Chain of Clbiguinone" Biochim.Biophys.Acta. 1302. 217-223 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] T.Koyama et al.: "Identification of Significant Residues in the Substrate Binding Site of Bacillus stearothermophilus Farnesyl Diphosphate Synthase" Biochomistry. 35. 9533-9538 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] S.-i.Ohnuma: "Conversion of Product Specificity of Archaebacterial Geraylgerany-diphosphate Synthase" J.Biol.chem.271. 18831-18837 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] S.-i.Ohnuma et al.: "A Role of the Amino Acid ResidueLocated on the Fifth Position before the First Aspartat-rich Motif of Farnesyl Diphosphorte Synthouse on Determination of the Final Product" J.Biol.chem.271. 30748-30754 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] S.-i.Ohnuma et al.: "Effects of Random Mutabenesis ina Putative Substrate-Binding Domain of Geranylgeravnyl Diphosphate Synthase upon Intermediate Formation and Substrate Specificity" J.Biochem.121. 696-704 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] S.-i.Ohnuma et al.: "Conversion from Archeal Geranylgeranyl Diphosphate Synthase to Farnesyl Diphosphate Synthase" J.Biol.chem.272. 5192-5198 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] M.Nagaki et al.: "An Artificial Substrate for the Thermostable Farnesyl Diphosphate Synthase from Bacillus stearathernophilus" Chem.Lett.497-498 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] 西野 徳三: "エーテル脂質生合成の初期段階" 日本油化学会誌. 46. 25-34 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Kubo et al.: "Cys2/His2 Zinc-finger Protein family of Petunia:Evolction and General Meohanism of Target-sequence Pcecognition" Nucleic Acid Res.(in pross). (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] S.-i.Ohnuma et al.: "Recognition of Allylic Sobstrates in Suldlobrs acidocaldarius Geranylgeranyl Diphosphote Synthase-Analysis UsingMutated Enzymes and Astificial Allylic Substrates" J.Biochem.(in pross). (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] H.Hemmi et al.: "Iolentification of lynes that Affect the Lycopene Formation in Esoherichia coli Transformed with Carotenoid Biosynthetic Genes.-Candidates for Eorly Steps of clsoprenoid Biosynthesis-" J.Biochem.(in pross). (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] S.-i.Ohnuma, M.Watanabe, and T.Nishino: "Identification and Characterization of Geranylgeraniol Kinase and Geranylgeranyl Phosphate Kinase from the Archaebacterium Sulfolobus acidocaldarius." J.Biochem.119. 541-547 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] S.Fujisaki, S.-i.Ohnuma, T.Horiuchi, I.Takahashi, S.Tsukui, Y.Nishiyama, T.Nishino, M.Kitabatake, and H.Inokuchi: "Cloning of a Gene from Escherichia coli that Confers Resistance to Fosmidomycin as a Consequence of Amplification." Gene. 175. 83-87 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] S.i.Ohnuma, T.Nakazawa, H.Hemmi, A.-M.Hallberg, T.Koyama, K.Ogura, and T.Nishino: "Conversion from Farnesyl Diphosphate Synthase to Geranylgeranyl Diphosphate Synthase by Randam Chemical Mutagenesis" J.Bio.Chem.271. 10087-10095 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Okada, K.Suzuki, Y.Kamiya, X.Zhu, S.Fujisaki, Y.Nishimura, T.Nishino, T.Nakagawa, M.Kawamukai, and H.Matsuda: "Polyprenyl Diphosphate Synthase Essentially Defines the Length of the Side Chain of Ubiquinone." Biochim.Biophys.Acta.1302. 217-223 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] T.Koyama, M.Tajima, H.Sano, T.Doi, A.Koike-Takeshita, S.Obata, T.Nishino, and K.Ogura: "Identification of Significant Residues in the Substrate Binding Site of Bacillus stearothermophilus Farnesyl Diphosphate Synthase." Biochemistry. 35. 9533-9538 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] S.-i. Ohnuma, k.Hirooka, H.Hemmi, C.Ishida, C.Ohto, and T.Nishino: "Conversion of Product Specificity of Archaebacterial Geranylgeranyl-diphosphate Synthase" J.Biol.Chem.271. 18831-18837 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] S.-i.Ohnuma, K.Narita, T.Nakazawa, C.Ishida, Y.Takeuchi, C.Ohto, and T.Nishino: "A Role of the Amino Acid Residue Located on the Fifth Position before the First Aspartate-rich Motif of Farnesyl Diphosphate Synthase on Determination of the Final Product." J.Biol.Chem.271. 30748-30754 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] S.-i.Ohnuma, H.Hemmi, C.Ohto, H.Nakane, and T.Nishino: "Effects of Random Mutagenesis in a Putative Substrate-Binding Domain of Geranylgeranyl Diphosphate Synthase upon Intermediate Formation and Substrate Specificity" J.Biochem.121. 696-704 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] S.-i.Ohnuma, K.Hirooka, C.Ohto, and T.Nishino: "Conversion from Archeal Geranylgeranyl Diphosphate Synthase to Farnesyl Diphosphate Synthase" J.Biol.Chem.272. 5192-5198 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] M.Nagaki, T.Koyama, T.Nishino, K.Shimizu, Y.Maki, and K.Ogura: "An Artificial Substrate for the Thermostable Farnesyl Diphosphate Synthase from Bacillus stearothermophilus" Chem.Lett.497-498 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] T.Nishino: "Early Steps of Biosynthesis of Ether Lipids in Archaebacteria." J.Jpn.Oil Chem.soc.46. 25-34 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] K.Kubo, A.Sakamoto, A.Kobayashi, Z.Rybka, Y.Konno, H.Nakagawa, T.Nishino, and H.Takatsuji: "Cys2/His2 Zinc-finger Protein family of Petunia : Evolution and General Mechanism of Target-sequence Recognition" Nucleic Acid Res.(in press.). (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] S.-i.Ohnuma, H.Hemmi, T.Koyama, K.Ogura, and T.Nishino: "Recognition of Allylic substrates in Sulfolobus acidocaldarius Geranylgeranyl Diphosphate Synthase.-Analysis Using Mutated Enzymes and Artificial Allylic Substrates-" j.Biochem.(in press.). (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] H.Hemmi, S.-i.Ohnuma, k.Nagaoka, and T.Nishino: "Identification of Genes that Affect the Lycopene Formation in Escherichia coli transformed with Carotenoid Biosynthetic Genes. -Candidates for Early Steps of Isoprenoid Biosynthesis-" J.Biochem.(in press.). (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1997 Final Research Report Summary
  • [Publications] S.-i.Ohnuma et al.: "Identification and Charactenzation of Geranylgeranyl Phoshate Kinase from the Archaebactorinm Sulfolbus aidocaldarins" J.Biochem.119. 541-547 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] S.-i.Ohnuma et al.: "Conversion from Fornesyl Diphosphate Synthase to Geranylgeranyl Diphosphate Synthase by Random Chemicol Mutagenesis" J.Biol Chem.271. 10087-10095 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] S.-i.Ohnuma et al.: "Conversion of Product Specificity of Arohaelacterial Geranylgeranyl diphosphate Synthase" J.Biol Chem.271. 18831-18837 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] S.-i.Ohnuma et al.: "A Role of the Aminc Acid Residue Located on the Filth Posilion bufore the First Aspartate-rich Motif of Fornesyl Diphosphate Synthase on Dctermination of the Finecl Product" J.Biol Chem.271. 30748-30754 (1996)

    • Related Report
      1997 Annual Research Report
  • [Publications] S.-i.Ohnuma et al.: "Effects of Rumdom Mutagenesis in a Putatine Substrute-linling Domain of Geranylgeranyl Diphosphate Synthase upon Lntermediate Formation and Substrste Specificity" J.Biochem.121. 696-704 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] S.-i.Ohnuma et al.: "Conversion from Arohaeal Geranylgeranyl Diphosphate Synthase to Farnesyl Diphosphate Synthase" J.Biol Chem.272. 5192-5198 (1997)

    • Related Report
      1997 Annual Research Report
  • [Publications] S. Ohnuma: "Identification and Characterization of Geranylgeranyl Phosphate Kinase from the Archaebacterium Sulfolobus acidcaldarius" J. Biochem.119. 541-547 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] S. Ohnuma: "Conversion from Farnesyl Diphosphata Synthase to Geranylgeranyl Diphosphata Synthase by Random Chemical Mutagenesis" J. Biol. Chem.271. 10087-10095 (1996)

    • Related Report
      1996 Annual Research Report
  • [Publications] S. Ohnuma: "Conversion of Product Specificity of Archaebacterial Geranylgeranyl diphosphata Synthase" J. Biol. Chem.271. 18831-18837 (1996)

    • Related Report
      1996 Annual Research Report

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Published: 1996-04-01   Modified: 2016-04-21  

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