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Real-time observation of interactions between trancription factors containing PAS domains

Research Project

Project/Area Number 15207010
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Functional biochemistry
Research InstitutionTohoku University

Principal Investigator

SOGAWA Kazuhiro  Tohoku University, Graduate School of Life Sciences, Professor, 大学院生命科学研究科, 教授 (80175421)

Co-Investigator(Kenkyū-buntansha) FUKUMURA Hiroshi  Tohoku University, Graduate School of Science, Professor, 大学院理学研究科, 教授 (50208980)
YASUMOTO Ken-ichi  Tohoku University, Graduate School of Life Sciences, Associate Professor, 大学院生命科学研究科, 助教授 (90241629)
KIKUCHI Yasuo  Tohoku University, Graduate School of Life Sciences, Associate Professor, 大学院生命科学研究科, 助教授 (10004467)
TAKASAKI Chikahisa  Tohoku University, Graduate School of Life Sciences, Instructor, 大学院生命科学研究科, 助手 (10004491)
Project Period (FY) 2003 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥45,500,000 (Direct Cost: ¥35,000,000、Indirect Cost: ¥10,500,000)
Fiscal Year 2005: ¥6,760,000 (Direct Cost: ¥5,200,000、Indirect Cost: ¥1,560,000)
Fiscal Year 2004: ¥6,760,000 (Direct Cost: ¥5,200,000、Indirect Cost: ¥1,560,000)
Fiscal Year 2003: ¥31,980,000 (Direct Cost: ¥24,600,000、Indirect Cost: ¥7,380,000)
KeywordsFRET / FLIM / living cells / protein-protein interaction / VBC complex / transcription factor / Elongin / von Hippel-Linda / in vivo計測 / FRIM-FRET / CFP / YFP / Living cell / protein-protein interaction / transcription factor / FRET-FLIM / Transcription factor
Research Abstract

We constructed a fluorescence lifetime imaging microscopy (FLIM) using a pulse diode laser and TSCSPC as an illuminator and a detector, respectively. Using the FLIM microscope, several protein-protein interactions were detected in living cells by FRET (Fluorescence Resonance Energy Transfer). First, interaction of GAPDH monomers in the tetramer was observed. Detailed analysis 1 of the FRET data suggested that GAPDH tetramers were formed posttranslationally by the random binding of monomers. Loose complex between GAPDH and PGK was observed by measuring FRET between them. The complex was also observed by measuring change in conformation of GAPDH by coexpression of PGK in living cells. We also observed conformational change of PGK by coexpression of PGK. Interaction between elongin B and elongin C was observed by FRET-FLIM. Although interaction between elongin C and pVHL was not observed, coexpression of elongin B largely induced interaction between elongin C and pVHL, suggesting that a conformational change of elongin C suitable for binding of pVHL was induced by binding of elongin B. In the LBP-1 protein family, homodimers of LBP-la and LBP-1c and heterodimers between LBP-1a and LBP-1c were observed in the cytosol. Homodimers of LBP-1b were observed in the nucleus of living cells using FRET-FLIM. Further, Arnt homodimer formation was observed in the PML body but not in the nucleoplasm by FRET-FLIM.

Report

(4 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • Research Products

    (10 results)

All 2006 2005 2004 Other

All Journal Article (7 results) Publications (3 results)

  • [Journal Article] Application of time - and space - resolved fluorescence spectroscopy to the distribution of guest species into micrometer - sized crystals.2006

    • Author(s)
      S.Hashimoto
    • Journal Title

      Phys.Chem.Chem.Phys 8

      Pages: 1451-1458

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Application of time- and space-resolved fluoresce n c-c spectroscopy to the distribution of guest species into micrometer-sized crystals2006

    • Author(s)
      S.Hashimoto, K.Uehara, K.Sogawa, M.Takada, H.Fukumura
    • Journal Title

      Phys.Chem.Chem.Phys. 8

      Pages: 1451-1458

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Application of time-and space-resolved fluorescence spectroscopy to the distribution of guest species into micrometer-sized zeolite crystals2006

    • Author(s)
      Shuichi Hashimoto
    • Journal Title

      Phys.Chem.Chem.Phys. (in press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Heterodimerization with LBP-1b is necessary for nuclear localization of LBP-1a and LBP-1c2005

    • Author(s)
      Fuyuhiko Sato
    • Journal Title

      Genes to cells 10

      Pages: 861-870

    • Related Report
      2005 Annual Research Report
  • [Journal Article] In vitro photodynamic effects of phthalocyaninatosilicon covalently linked to 2,2,6,6-tetramethyl-1-piperidinyloxy radicals on cancer cells2005

    • Author(s)
      Kazuyuki Ishii
    • Journal Title

      Free Radical Biology & Medicine 38

      Pages: 920-927

    • Related Report
      2005 Annual Research Report
  • [Journal Article] A novel induction mechanism of the rat CYP1A2 gene mediated by Ah receptor-Arnt heterodimer2004

    • Author(s)
      Kazuhiro Sogawa
    • Journal Title

      Bio chem.Biophys.Res.Commun. 318

      Pages: 746-755

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Altered DNA binding specificity of Arnt by selection of partner bHLH-PAS proteins2004

    • Author(s)
      Koshi Kinosita
    • Journal Title

      Nuc.Acids.Res. 32

      Pages: 3169-3179

    • Related Report
      2004 Annual Research Report
  • [Publications] D.Mori: "Gene structure and promoter analysis of the rat BTEB2 gene"Gene. 304. 163-170 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Y.Kikuchi: "Heterodimers of bHLH-PAS Protein Fragments Derived from AhR, AhRR, and Arnt Prepared by Co-Expression in Escherichia coli : Characterization of Their DNA Binding Activity and Preparation of a DNA Complex"J.Biochem.. 134. 83-90 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] M.Morita: "HLF/HIF-2α is a key factor in retinopathy of prematurity in association with erythropoietin"EMBO J.. 22. 1134-1146 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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