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Identification and analysis of Agrobacterium genes that determine characteristics suitable for rice transformation

Research Project

Project/Area Number 15H04479
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied microbiology
Research InstitutionHiroshima University

Principal Investigator

Suzuki Katsunori  広島大学, 理学研究科, 教授 (50221320)

Co-Investigator(Kenkyū-buntansha) 平賀 良知  広島工業大学, 生命学部, 教授 (10238347)
山本 真司  広島大学, 理学研究科, 特任助教 (50607348)
Research Collaborator TAKAGI Ryukichi  広島大学, 大学院理学研究科, 助教 (90304394)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥15,470,000 (Direct Cost: ¥11,900,000、Indirect Cost: ¥3,570,000)
Fiscal Year 2017: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Fiscal Year 2016: ¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2015: ¥7,280,000 (Direct Cost: ¥5,600,000、Indirect Cost: ¥1,680,000)
KeywordsAgrobacterium / rice transformation / p-coumarylalcohol / dehydrogenase / catabolism / mutant / plasmid removal / enzyme / alcohol dehydrogenase / 感染遺伝子発現調節 / イネ形質転換 / クマリルアルコール代謝 / 分解代謝遺伝子 / 代謝遺伝子 / クマリルアルコール代謝遺伝子
Outline of Final Research Achievements

The Agrobacterium strain C58 has been used for rice transformation. The strain shows high ability to degrade p-coumarylalcohol (PCAL) that is secreted by rice cells and induces Agrobacterium vir genes. This study was conducted to enhance its transformation ability by revealing its genes for PCAL degradation. Removal of six putative dehydrogenase genes decreased PCAL dehydrogenase activity and degrading ability, and increased vir gene expression in response to co-cultivation with rice cali. The enzymes were found highly specific to PCAL. In addition to the multi gene family character, the data suggest physiological and ecological roles of the PCAL catabolism in the interaction between plant and Agrobacterium. In addition, this study invented a new and powerful technique to remove highly stable plasmid DNAs from strains.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (12 results)

All 2018 2017 2016 2015 Other

All Int'l Joint Research (2 results) Journal Article (2 results) (of which Peer Reviewed: 2 results,  Acknowledgement Compliant: 1 results) Presentation (8 results) (of which Int'l Joint Research: 1 results,  Invited: 2 results)

  • [Int'l Joint Research] INRA/Claud Universite Lyon(フランス)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] リヨン第1大学/フランス国立農業研究機構 (INRA)(フランス)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Effective removal of a range of Ti/Ri plasmids using a pBBR1-type vector having a repABC operon and a lux reporter system2018

    • Author(s)
      Yamamoto Shinji、Sakai Ayako、Agustina Vita、Moriguchi Kazuki、Suzuki Katsunori
    • Journal Title

      Applied Microbiology and Biotechnology

      Volume: 102 Issue: 4 Pages: 1823-1836

    • DOI

      10.1007/s00253-017-8721-7

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Horizontal DNA transfer from bacteria to eukaryotes and a lesson from experimental transfers.2015

    • Author(s)
      Suzuki K, Moriguchi K, Yamamoto S
    • Journal Title

      Res Microbiol

      Volume: 166 Issue: 10 Pages: 753-763

    • DOI

      10.1016/j.resmic.2015.08.001

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Characterization of supervirulent Agrobacterium strains by vir gene expression and T-DNA transfer ability2017

    • Author(s)
      V. Agustina, A. Sakai, M. Shibata, S. Yamamoto, H. Sawada, K. Suzuki
    • Organizer
      中国四国植物学会 第74回大会
    • Place of Presentation
      高知大学
    • Year and Date
      2017-05-13
    • Related Report
      2016 Annual Research Report
  • [Presentation] Broad application range of Agrobacterium-mediated transformation as well as virulence gene induction by the H-type lignin precursor evoke an idea to implicate lower classes of plants as ancestral hosts2017

    • Author(s)
      K Suzuki
    • Organizer
      Plant Signaling & Behavior 2017, held at KUNIBKI Messa, Matsue, JAPAN June 30, 2017 (June 27-30)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] イネ由来vir遺伝子誘導物質パラクマリルアルコールを分解するアグロバクテリアのアルコール脱水素酵素分子種の特定2017

    • Author(s)
      清川一矢・森脇隼人・福満啓博・庄田佐知子・山本真司・鈴木克周
    • Organizer
      2017 分子生物学会 (2017年12月 8日 於 神戸ポートアイランド国際展示場)
    • Related Report
      2017 Annual Research Report
  • [Presentation] An Agrobacterium strain potentially responsive to rice plant2016

    • Author(s)
      K. Suzuki
    • Organizer
      Seminar held by the Team Diversity and adaptation of phytopathogenic bacteria Microbial ecology / UMR CNRS 5557 University Claude Bernard - Lyon 1
    • Place of Presentation
      リヨン第1大学 フランス
    • Year and Date
      2016-09-15
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] イネ細胞が分泌するvir 遺伝子誘導物質p-coumaryl alcohol のAgrobacterium による分解2016

    • Author(s)
      庄田佐知子、福満啓博、藤井研人、坂井綾子、高木隆吉、安倍学、山本真司、鈴木克周
    • Organizer
      日本農芸化学会 2016年度大会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2016-03-29
    • Related Report
      2015 Annual Research Report
  • [Presentation] 染色体DNA全塩基配列を用いた植物病原性細菌Rhizobium radiobacte(syn. Agrobacterium tumefaciens)の種内グループの解析2015

    • Author(s)
      方岡由衣、鈴木克周、山本真司、澤田宏之、内山郁夫
    • Organizer
      BMB2015(第38回日本分子生物学会年会、第88回日本生化学会大会 合同大会)
    • Place of Presentation
      神戸ポートアイランド 神戸国際展示場
    • Year and Date
      2015-12-03
    • Related Report
      2015 Annual Research Report
  • [Presentation] イネ細胞が分泌するvir 遺伝子誘導物質p-coumaryl alcohol のAgrobacterium による分解2015

    • Author(s)
      庄田佐知子,藤井研人,坂井綾子,高木隆吉,安倍学,山本真司,鈴木克周
    • Organizer
      中国四国植物学会 第72回大会
    • Place of Presentation
      愛媛大学(松山市)
    • Year and Date
      2015-05-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] 高病原性を示すアグロバクテリウム菌株CNI5 の研究2015

    • Author(s)
      柴田桃子,山本真司,鈴木克周
    • Organizer
      中国四国植物学会 第72回大会
    • Place of Presentation
      愛媛大学(松山市)
    • Year and Date
      2015-05-16
    • Related Report
      2015 Annual Research Report

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Published: 2015-04-16   Modified: 2019-03-29  

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