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Investigation of the molecular mechanism of AIDS virus evolution

Research Project

Project/Area Number 15K07166
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Evolutionary biology
Research InstitutionKyoto University

Principal Investigator

Sato Kei  京都大学, ウイルス・再生医科学研究所, 講師 (10593684)

Co-Investigator(Renkei-kenkyūsha) Koyanagi Yoshio  京都大学・ウイルス, 再生医科学研究所, 教授 (80215417)
Iwasa You  九州大学, 理学研究院, 教授 (70176535)
Iwami Shingo  九州大学, 理学研究院, 准教授 (90518119)
Ren FengRong  東京医科歯科大学, 難治疾患研究所, 特任准教授 (60280989)
Nakagawa So  東海大学, 医学部, 講師 (70510014)
Research Collaborator Dong Sung An  カリフォルニア大学ロサンゼルス校, 教授
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywordsシステムウイルス学 / HIV-1 / チンパンジー / ヒト化マウス / 適応進化 / HIV / SIV / 進化ウイルス学 / エイズ
Outline of Final Research Achievements

HIV-1, the causative agent of AIDS, is originated from SIVcpz, the chimpanzee precursor of the human virus, approximately 100 years ago. This indicates that HIV-1 has emerged through the cross-species transmission of SIVcpz from chimpanzees to humans. However, it remains unclear how SIVcpz has evolved into pandemic HIV-1 in humans. To address this question, we used three SIVcpz (MB897, EK505, and MT145), four pandemic HIV-1 (NL4-3, NLCSFV3, JRCSF and AD8) and 2 non-pandemic HIV-1 (YBF30 and DJO0131) strains and humanized mouse model. This is the first experimental investigation to use an animal model to demonstrate a gain-of-function evolution of SIVcpz into pandemic HIV-1.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (39 results)

All 2018 2017 2016 2015

All Journal Article (22 results) (of which Int'l Joint Research: 14 results,  Peer Reviewed: 22 results,  Open Access: 19 results,  Acknowledgement Compliant: 7 results) Presentation (17 results) (of which Int'l Joint Research: 5 results,  Invited: 4 results)

  • [Journal Article] Type I interferon responses by HIV-1 infection: association with disease progression and control2018

    • Author(s)
      Andrew Soper, Izumi Kimura, Shumpei Nagaoka, Yoriyuki Konno, Keisuke Yamamoto, Yoshio Koyanagi & Kei Sato*. (*Correspondence)
    • Journal Title

      Frontiers in Immunology

      Volume: 8 Pages: 1823-1823

    • DOI

      10.3389/fimmu.2017.01823

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Experimental adaptive evolution of simian immunodeficiency virus SIVcpz to pandemic human immunodeficiency virus type 1 using a humanized mouse model2018

    • Author(s)
      Kei Sato*, Naoko Misawa, Junko S Takeuchi, Tomoko Kobayashi, Taisuke Izumi, Hirofumi Aso, Shumpei Nagaoka, Keisuke Yamamoto, Izumi Kimura, Yoriyuki Konno, Yusuke Nakano & Yoshio Koyanagi. (*Correspondence)
    • Journal Title

      Journal of Virology

      Volume: 92 Issue: 4

    • DOI

      10.1128/jvi.01905-17

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Different effects of two mutations on the infectivity of Ebola virus glycoprotein in nine mammalian species2018

    • Author(s)
      Kurosaki, Y., Ueda, M.T., Nakano, Y., Yasuda, J., Koyanagi, Y., Sato, K. and Nakagawa, S.
    • Journal Title

      Journal of General Virology

      Volume: 99(2) Issue: 2 Pages: 181-186

    • DOI

      10.1099/jgv.0.000999

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] HIV-1 competition experiments in humanized mice show that APOBEC3H imposes selective pressure and promotes virus adaptation.2017

    • Author(s)
      Yusuke Nakano, Naoko Misawa, Guillermo Juarez-Fernandez, Miyu Moriwaki, Shinji Nakaoka, Takaaki Funo, Eri Yamada, Andrew Soper, Rokusuke Yoshikawa, Diako Ebrahimi, Yuuya Tachiki, Shingo Iwami, Reuben S. Harris, Yoshio Koyanagi & Kei Sato
    • Journal Title

      PLOS Pathogens

      Volume: 13 Issue: 5 Pages: 31-31

    • DOI

      10.1371/journal.ppat.1006348

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Human-specific adaptations in Vpu conferring anti-tetherin activity are critical for efficient early HIV-1 replication in vivo.2017

    • Author(s)
      Eri Yamada, Shinji Nakaoka, Lukas Klein, Elisabeth Reith, Simon Langer, Kristina Hopfensperger, Shingo Iwami, Gideon Schreiber, Frank Kirchhoff, Yoshio Koyanagi, Daniel Sauter & Kei Sato
    • Journal Title

      Cell Host & Microbe

      Volume: 23 Issue: 1 Pages: 110-120

    • DOI

      10.1016/j.chom.2017.12.009

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Quantifying the effect of Vpu on the promotion of HIV-1 replication in the humanized mouse model2016

    • Author(s)
      Ikeda H, Nakaoka S, de Boer RJ, Morita S, Misawa N, Koyanagi Y, Aihara K, Sato K, Iwami S
    • Journal Title

      Retrovirology

      Volume: 13 Issue: 1 Pages: 23-23

    • DOI

      10.1186/s12977-016-0252-2

    • NAID

      120006353849

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Modelling Ebola virus dynamics: Implications for therapy.2016

    • Author(s)
      Martyushev A, Nakaoka S, Sato K, Noda T, Iwami S.
    • Journal Title

      Antiviral Res

      Volume: 135 Pages: 62-73

    • DOI

      10.1016/j.antiviral.2016.10.004

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] A naturally occurring bovine APOBEC3 confers resistance to bovine lentiviruses: implication for the co-evolution of bovids and their lentiviruses.2016

    • Author(s)
      Yamada E, Yoshikawa R, Nakano Y, Misawa N, Kobayashi T, Ren F, Izumi T, Miyazawa T, Koyanagi Y, Sato K.
    • Journal Title

      Sci Rep

      Volume: 6:33988 Issue: 1 Pages: 33988-33988

    • DOI

      10.1038/srep33988

    • NAID

      120005997850

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Small ruminant lentiviral Vif proteins commonly utilize cyclophilin A, an evolutionary and structurally conserved protein, to degrade ovine and caprine APOBEC3 proteins2016

    • Author(s)
      Yoshikawa R, Izumi T, Nakano Y, Yamada E, Moriwaki M, Misawa N, Ren F, Kobayashi T, Koyanagi Y, Sato K.
    • Journal Title

      Microbiol Immunol

      Volume: 60 Issue: 6 Pages: 427-436

    • DOI

      10.1111/1348-0421.12387

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] A naturally occurring domestic cat APOBEC3 variant confers resistance to FIV infection2016

    • Author(s)
      Rokusuke Yoshikawa, Taisuke Izumi, Eri Yamada, Yusuke Nakano, Naoko Misawa, Fengrong Ren, Michael A. Carpenter, Terumasa Ikeda, Carsten Münk, Reuben S. Harris, Takayuki Miyazawa, Yoshio Koyanagi & Kei Sato
    • Journal Title

      Journal of Virology

      Volume: 90 Issue: 1 Pages: 474-485

    • DOI

      10.1128/jvi.02612-15

    • Related Report
      2016 Research-status Report 2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Species-specific differences in the ability of feline lentiviral Vif to degrade feline APOBEC3 proteins.2016

    • Author(s)
      Yoshikawa R, Nakano Y, Yamada E, Izumi T, Misawa N, Koyanagi Y, Sato K.
    • Journal Title

      Microbiol Immunol

      Volume: 60 Issue: 4 Pages: 272-279

    • DOI

      10.1111/1348-0421.12371

    • NAID

      40020808948

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Determinants of FIV and HIV Vif sensitivity of feline APOBEC3 restriction factors2016

    • Author(s)
      Zhang Z, Gu Q, Jaguva Vasudevan AA, Hain A, Kloke BP, Hasheminasab S, Mulnaes D, Sato K, Cichutek K, Haussinger D, Bravo IG, Smits SH, Gohlke H, Munk C
    • Journal Title

      Retrovirology

      Volume: 13 Issue: 1 Pages: 46-46

    • DOI

      10.1186/s12977-016-0274-9

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] APOBEC3 proteins can copackage and comutate HIV-1 genomes.2016

    • Author(s)
      Desimmie BA, Burdick RC, Izumi T, Doi H, Shao W, Alvord WG, Sato K, Koyanagi Y, Jones S, Wilson E, Hill S, Maldarelli F, Hu WS, Pathak VK.
    • Journal Title

      Nucleic Acids Res

      Volume: 44: Issue: 16 Pages: 7848-7865

    • DOI

      10.1093/nar/gkw653

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Dynamics of HIV infection in lymphoid tissue network2015

    • Author(s)
      Shinji Nakaoka, Shingo Iwami & Kei Sato
    • Journal Title

      Journal of Mathematical Biology

      Volume: 72 Issue: 4 Pages: 909-938

    • DOI

      10.1007/s00285-015-0940-x

    • Related Report
      2016 Research-status Report 2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Pandemic HIV-1 Vpu overcomes intrinsic herd immunity mediated by tetherin2015

    • Author(s)
      Shingo Iwami, Kei Sato, Satoru Morita, Hisashi Inaba, Tomoko Kobayashi, Junko S. Takeuchi, Yuichi Kimura, Naoko Misawa, Fengrong Ren, Yoh Iwasa, Kazuyuki Aihara & Yoshio Koyanagi
    • Journal Title

      Scientific Reports

      Volume: 5 Issue: 1 Pages: 12256-12256

    • DOI

      10.1038/srep12256

    • NAID

      120005774579

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Down-modulation of primate lentiviral receptors by Nef proteins of simian immunodeficiency virus (SIV) of chimpanzees (SIVcpz) and related SIVs: implication for the evolutionary event at the emergence of SIVcpz2015

    • Author(s)
      Yusuke Nakano, Kenta Matsuda, Rokusuke Yoshikawa, Eri Yamada, Naoko Misawa, Vanessa M. Hirsch, Yoshio Koyanagi & Kei Sato
    • Journal Title

      Journal of General Virology

      Volume: 96 Issue: 9 Pages: 2867-2877

    • DOI

      10.1099/vir.0.000207

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Cell-to-cell infection by HIV contributes over half of virus infection2015

    • Author(s)
      Shingo Iwami, Junko S. Takeuchi, Shinji Nakaoka, Fabrizio Mammano, François Clavel, Hisashi Inaba, Tomoko Kobayashi, Naoko Misawa, Kazuyuki Aihara, Yoshio Koyanagi & Kei Sato
    • Journal Title

      eLife

      Volume: 4 Pages: 1-16

    • DOI

      10.7554/elife.08150

    • NAID

      120005997708

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Coevolutionary dynamics between tribe Cercopithecini tetherins and their lentiviruses2015

    • Author(s)
      Junko S. Takeuchi, Fengrong Ren, Rokusuke Yoshikawa, Eri Yamada, Yusuke Nakano, Tomoko Kobayashi, Kenta Matsuda, Taisuke Izumi, Naoko Misawa, Yuta Shintaku, Katherine S. Wetzel, Ronald G. Collman, Hiroshi Tanaka, Vanessa M. Hirsch, Yoshio Koyanagi & Kei Sato
    • Journal Title

      Scientific Reports

      Volume: 5 Issue: 1 Pages: 16021-16021

    • DOI

      10.1038/srep16021

    • NAID

      120005753887

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Experimental evaluation of the zoonotic infection potency of simian retrovirus type 4 using humanized mouse model2015

    • Author(s)
      Kei Sato, Tomoko Kobayashi, Naoko Misawa, Rokusuke Yoshikawa, Junko S. Takeuchi, Tomoyuki Miura, Munehiro Okamoto, Jun-ichirou Yasunaga, Masao Matsuoka, Mamoru Ito, Takayuki Miyazawa & Yoshio Koyanagi
    • Journal Title

      Scientific Reports

      Volume: 5 Issue: 1 Pages: 14040-14040

    • DOI

      10.1038/srep14040

    • NAID

      120005753867

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A conservation law for virus infection kinetics in vitro2015

    • Author(s)
      Yusuke Kakizoe, Satoru Morita, Shinji Nakaoka, Yasuhiro Takeuchi, Kei Sato, Tomoyuki Miura, Catherine A. A. Beauchemin, and Shingo Iwami
    • Journal Title

      Journal of Theoretical Biology

      Volume: 376 Pages: 39-47

    • DOI

      10.1016/j.jtbi.2015.03.034

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Impacts of humanized mouse models on the investigation of HIV-1 infection: illuminating the roles of viral accessory proteins in vivo.2015

    • Author(s)
      Yamada, E., Yoshikawa, R., Nakano, Y., Misawa, N., Koyanagi, Y., Sato, K.
    • Journal Title

      Viruses

      Volume: 7 Issue: 3 Pages: 1373-1390

    • DOI

      10.3390/v7031373

    • NAID

      120005774663

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Vif determines the requirement for CBF-β in APOBEC3 degradation2015

    • Author(s)
      Rokusuke Yoshikawa, Junko S. Takeuchi, Eri Yamada, Yusuke Nakano, Fengrong Ren, Hiroshi Tanaka, Carsten Münk, Reuben S. Harris, Takayuki Miyazawa, Yoshio Koyanagi & Kei Sato
    • Journal Title

      Journal of General Virology

      Volume: 86 Issue: 4 Pages: 887-892

    • DOI

      10.1099/jgv.0.000027

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Gain-of-function evolution of SIVcpz in humanized mouse model2016

    • Author(s)
      Sato, K., Misawa, N., Takeuchi, J.S., Kobayashi, T., Yamada, E., Nakano, Y., Yoshikawa, R. and Koyanagi, Y
    • Organizer
      Cold Spring Harbor Retrovirus meeting
    • Place of Presentation
      New York, USA
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Investigation of the interplay between cellular proteins and HIV-1-encoding proteins using humanized mouse model2016

    • Author(s)
      Sato, K
    • Organizer
      The 15th Awaji International Forum on Infection and Immunity
    • Place of Presentation
      淡路島
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] エボラウィルス糖蛋白質(GP)遺伝子の分子進化解析2015

    • Author(s)
      上田真保子、泉泰輔、佐藤佳、中川草
    • Organizer
      BMB2015
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-03
    • Related Report
      2015 Research-status Report
  • [Presentation] ウシ族の進化過程におけるAPOBEC3Z2蛋白質の発現レベル多様性の出現2015

    • Author(s)
      中野雄介、山田英里、吉川禄助、泉泰輔、小林朋子、三沢尚子、任鳳蓉、佐藤佳、小柳義夫
    • Organizer
      BMB2015
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-03
    • Related Report
      2015 Research-status Report
  • [Presentation] Impact of genetic and functional changes in HIV-1 and SIVcpz transmission2015

    • Author(s)
      Sato, K. and Koyanagi, Y
    • Organizer
      第29回日本エイズ学会学術集会・総会
    • Place of Presentation
      東京
    • Year and Date
      2015-11-30
    • Related Report
      2015 Research-status Report
  • [Presentation] Evolutionary arms race between viruses and mammals: an interdisciplinary research of experimental virology and molecular phylogenetic2015

    • Author(s)
      Sato, K
    • Organizer
      日本バイオインフォマティクス学会生命システム理論研究会
    • Place of Presentation
      東京
    • Year and Date
      2015-11-27
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] Dynamics of HIV-1 infection in humanized mouse model2015

    • Author(s)
      Sato, K
    • Organizer
      第63回日本ウイルス学会学術集会
    • Place of Presentation
      福岡
    • Year and Date
      2015-11-24
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] Evolutionary arms race between domestic cat (Felis catus) and its cognate lentivirus (FIV)2015

    • Author(s)
      Yoshikawa, R., T. Izumi, Yamada, E., Nakano, Y., Misawa, N., Ren, F., Miyazawa, T., Sato, K., and Koyanagi, Y
    • Organizer
      第63回日本ウイルス学会学術集会
    • Place of Presentation
      福岡
    • Year and Date
      2015-11-22
    • Related Report
      2015 Research-status Report
  • [Presentation] Functional positive selection of a bovine APOBEC3 driven by bovine lentivirus2015

    • Author(s)
      Yamada, E., Yoshikawa, R., T. Izumi, Nakano, Y., Misawa, N., Kobayashi, T., Ren, F., Sato, K., and Koyanagi, Y
    • Organizer
      第63回日本ウイルス学会学術集会
    • Place of Presentation
      福岡
    • Year and Date
      2015-11-22
    • Related Report
      2015 Research-status Report
  • [Presentation] Evolutionary dynamics of HIV-1-lineage lentiviruses and primates: evolutionary arms race between viral protein and host protein2015

    • Author(s)
      Sato, K
    • Organizer
      Innovative Mathematical Modeling for the Analysis of Infectious Disease Data
    • Place of Presentation
      札幌
    • Year and Date
      2015-10-30
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] 自然発生Vif変異によるレンチウイルスの弱毒化2015

    • Author(s)
      吉川禄助、竹内(柴田)潤子、山田英里、中野雄介、木村雄一、橋本暁、宮沢孝幸、佐藤佳、小柳義夫
    • Organizer
      第158回日本獣医学会
    • Place of Presentation
      十和田
    • Year and Date
      2015-09-07
    • Related Report
      2015 Research-status Report
  • [Presentation] 動物レンチウイルスからみるウイルスと宿主の共進化2015

    • Author(s)
      吉川禄助, 泉泰輔, 山田英里, 中野雄介, 任鳳蓉, 宮沢孝幸, 佐藤佳, 小柳義夫
    • Organizer
      第17回日本進化学会
    • Place of Presentation
      東京
    • Year and Date
      2015-08-20
    • Related Report
      2015 Research-status Report
  • [Presentation] ネコAPOBEC3Z3多型とFIV感染感受性との関係性2015

    • Author(s)
      吉川禄助, 泉泰輔, 山田英里, 中野雄介, 任鳳蓉, 宮沢孝幸, 佐藤佳, 小柳義夫
    • Organizer
      第21回野生動物医学会
    • Place of Presentation
      江別
    • Year and Date
      2015-08-01
    • Related Report
      2015 Research-status Report
  • [Presentation] ウシ族の進化とレンチウイルスの関連についての考察2015

    • Author(s)
      山田英里, 中野雄介, 吉川禄助, 泉泰輔, 小林朋子,任鳳蓉, 宮沢孝幸, 小柳義夫, 佐藤佳
    • Organizer
      第21回野生動物医学会
    • Place of Presentation
      江別
    • Year and Date
      2015-08-01
    • Related Report
      2015 Research-status Report
  • [Presentation] チンパンジーからのエイズウイルス適応原理の解析2015

    • Author(s)
      佐藤佳
    • Organizer
      第17回白馬シンポジウム
    • Place of Presentation
      米子
    • Year and Date
      2015-06-19
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] A naturally occurring domestic cat APOBEC3 variant confers resistance to FIV infection2015

    • Author(s)
      Yoshikawa, R., T. Izumi, Yamada, E., Nakano, Y., Misawa, N., Ren, F., Carpenter, M. A., Ikeda, T., Münk, C., Harris, R. S., Miyazawa, T., Sato, K., and Koyanagi, Y
    • Organizer
      Cold Spring Harbor Laboratory Meeting on Retroviruses
    • Place of Presentation
      New York
    • Year and Date
      2015-05-22
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Experimental adaptive evolution of SIVcpz to humans using humanized mouse model2015

    • Author(s)
      Sato, K., Misawa, N., Takeuchi, J. S., Kobayashi, T., Yamada, E., Nakano, Y., Yoshikawa, R., and Koyanagi, Y
    • Organizer
      Cold Spring Harbor Laboratory Meeting on Retroviruses
    • Place of Presentation
      New York
    • Year and Date
      2015-05-21
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research

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Published: 2015-04-16   Modified: 2019-03-29  

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