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Integrated analysis on the metastasis of colorectal cancer using next generation sequence

Research Project

Project/Area Number 15K10152
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Digestive surgery
Research InstitutionNihon University

Principal Investigator

MIDORIKAWA Yutaka  日本大学, 医学部, 准教授 (10292905)

Co-Investigator(Kenkyū-buntansha) 檜垣 時夫  日本大学, 医学部, 助教 (70246883)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2017: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2015: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords統合解析 / ネットワーク解析 / DNAメチル化 / 大腸癌 / 転移 / 次世代シーケンス / 大腸がん / 肝転移 / 次世代シークエンサー / 責任遺伝子 / ゲノム異常 / 大腸がん肝転移 / 発現解析 / エピゲノム / 大腸癌肝転移
Outline of Final Research Achievements

High-throughput biological technologies have been producing a vast amount of multi-omics data regarding cancer genomics. We performed integrated analysis using gene expression and DNA methylation profiles of 116 colorectal cancer samples. First, based on gene expression values, colorectal cancer samples were divided into three clusters (Cluster-1, -2, and -3). The 5-year overall survival rates were 74.8%, 29.2%, and 29.4% in Cluster-1, -2, and -3, respectively. Second, each cluster was divided into two subgroups based on methylation status, and the 5-year overall survival rate of Cluster-1H (36.8%) was significantly shorter than that of Cluster-1L (96.1%). Third, network-based analysis using expression and methylation profiles demonstrated that the PTX3 gene was highly methylated in Cluster-1H. These combined data indicate that integrated analysis can identify disease characteristics that would be missed using single comprehensive analysis.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (8 results)

All 2017 2016 2015 2014

All Journal Article (6 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 6 results,  Acknowledgement Compliant: 3 results,  Open Access: 1 results) Presentation (2 results) (of which Int'l Joint Research: 1 results)

  • [Journal Article] A prediction model for the grade of liver fibrosis using magnetic resonance elastography.2017

    • Author(s)
      Mitsuka Y, Midorikawa Y, Abe H, Matsumoto N, Moriyama M, Haradome H, Sugitani M, Tsuji S, Takayama T.
    • Journal Title

      BMC Gastroenterol.

      Volume: 17 Issue: 1 Pages: 133-133

    • DOI

      10.1186/s12876-017-0700-z

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Diabetes mellitus not an unfavorable factor on the prognosis of hepatitis C virus-related hepatocellular carcinoma.2017

    • Author(s)
      Yoshida N, Midorikawa Y, Higaki T, Nakayama H, Tsuji S, Matsuoka S, Ishihara H, Moriyama M, Takayama T.
    • Journal Title

      Hepatol Res.

      Volume: 印刷中 Issue: 1 Pages: 28-35

    • DOI

      10.1111/hepr.12888

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Network-based analysis for identification of candidate genes for colorectal cancer progression.2016

    • Author(s)
      Tsuji S, Midorikawa Y, Seki M, Takayama T, Sugiyama Y, Aburatani H.
    • Journal Title

      Biochem Biophys Res Commun.

      Volume: 476 Issue: 2 Pages: 534-40

    • DOI

      10.1016/j.surg.2017.02.014

    • Related Report
      2017 Annual Research Report 2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Promoter hypomethylation of RAR-related orphan receptor α 1 is correlated with unfavorable clinicopathological features in patients with colorectal cancer2016

    • Author(s)
      Kano H, Takayama T, Midorikawa Y, Nagase H.
    • Journal Title

      BioScience Trends

      Volume: 10 Issue: 3 Pages: 202-209

    • DOI

      10.5582/bst.2016.01097

    • NAID

      130005167354

    • ISSN
      1881-7815, 1881-7823
    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Preoperative diagnosis with versus without MRI in resection for hepatocellular carcinoma.2015

    • Author(s)
      Aramaki O
    • Journal Title

      Surgery

      Volume: 158 Issue: 6 Pages: 1512-1520

    • DOI

      10.1016/j.surg.2015.06.019

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Surgical outcomes in patients with hepatocellular carcinoma associated with metabolic syndrome.2014

    • Author(s)
      Yoshida N, Takayama T, Midorikawa Y, Higaki T, Nakayama H, Moriguchi M, Tsuji S.
    • Journal Title

      World Journal of  Surgery

      Volume: 39 Issue: 2 Pages: 471-7

    • DOI

      10.1007/s00268-014-2828-0

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] B型肝炎既感染肝癌患者におけるB型肝炎ウィルスDNA遺伝子組み込みの網羅的解析2017

    • Author(s)
      緑川 泰、高山忠利、油谷浩幸
    • Organizer
      第103回日本消化器病学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Genetic diagnosis of multiple hepatocellular carcinoma2017

    • Author(s)
      Yutaka Midorikawa, Shogo Yamamoto, Kenji Tatsuno, Hiroki Ueda, Shingo Tsuji, Genta Nagae, Tadatoshi Takayama, and Hiroyuki Aburatani.
    • Organizer
      American Association of Cancer Research 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research

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Published: 2015-04-16   Modified: 2019-03-29  

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