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Development of a method to determine hydroxymethylcytosine in DNA at single base resolution utilizing recombinant DNMT1

Research Project

Project/Area Number 15K14478
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Functional biochemistry
Research InstitutionOsaka University

Principal Investigator

TAJIMA Shoji  大阪大学, たんぱく質研究所, 教授 (50132931)

Co-Investigator(Kenkyū-buntansha) KIMURA Hironobu  大阪大学, 蛋白質研究所, 助教 (60378891)
SUETAKE Isao  大阪大学, 蛋白質研究所, 准教授 (80304054)
Co-Investigator(Renkei-kenkyūsha) ITO Takashi  九州大学, 大学院医学研究院, 教授 (90201326)
Project Period (FY) 2015-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
KeywordsDNAヒドロキシメチル化修飾 / DNAメチル化 / DNAメチル基転移酵素 / DNAメチル化酵素
Outline of Final Research Achievements

Genomic DNA methylation modification plays crucial role in development. Major players of the establishment of DNA methylation and replication-coupled maintenance DNA methylation have been identified. Recently, active DNA demethylation step has been reported to be catalyzed initially by TET family oxidases to produce hydroxymethylcytosine. Although several techniques to identify the position of hydroxymethylcytosine in genome have been reported, they possess disadvantages. In the present study, we have developed a new technique to determine hydroxymethylcytosine at single base resolution utilizing recombinant DNA methyltransferase DNMT1.

Report

(2 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • Research Products

    (9 results)

All 2016 2015

All Journal Article (2 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 2 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (6 results) (of which Int'l Joint Research: 1 results) Book (1 results)

  • [Journal Article] A novel method to analyze 5-hydroxymethylcytosine in CpG sequences using maintenance DNA methyltransferase, DNMT12015

    • Author(s)
      Saori Takahashi, Isao Suetake, Jan Engelhardt, Shoji Tajima
    • Journal Title

      FEBS Open Bio

      Volume: 5 Issue: 1 Pages: 741-747

    • DOI

      10.1016/j.fob.2015.09.003

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Selective oxidation of 5-hydroxymethylcytosine with micelle incarcerated oxidants to determine it at single base resolution.2015

    • Author(s)
      Seketsu Fukuzawa, Kazuo Tachibana, Shoji Tajima, Isao Suetake
    • Journal Title

      Bioorganic and Medicinal Chemistry Letters

      Volume: 25 Issue: 24 Pages: 5667-5671

    • DOI

      10.1016/j.bmcl.2015.11.017

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 5-ヒドロキシメチルシトシンの一塩基レベルでの検出法の開発2016

    • Author(s)
      福沢世傑、高橋沙央里、橘和夫、田嶋正二、末武 勲
    • Organizer
      日本化学会 第96春季年会
    • Place of Presentation
      同志社大学 京田辺キャンパス(京都府京田辺市)
    • Year and Date
      2016-03-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] マウスES細胞における組換えDNMT1を利用した簡易的な1塩基解像度での5hmCの解析2015

    • Author(s)
      高橋沙央里、末武勲、Jan Engelhardt、田嶋正二
    • Organizer
      第38回日本分子生物学会年会、第88回日本生化学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] ミセル包含酸化剤を用いた一塩基レベルでの5-ヒドロキシメチルシトシン検出法2015

    • Author(s)
      福沢世傑、高橋沙央里、橘和夫、田嶋正二、末武勲
    • Organizer
      第38回日本分子生物学会年会、第88回日本生化学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] Development of a method for a single base resolution analysis of 5-hydroxymethylcytosine with recombinant DNMT12015

    • Author(s)
      Saori Takahasi, Isao Suetake, Jan Engelhardt, Takashi Khoda,Shoji Tajima
    • Organizer
      The 40th Naito Conference on “Epigenetics―From Histone Code to Therapeutic Strategy”
    • Place of Presentation
      Chatraise Gateaux Kingdom Sapporo, Hokkaido, Japan
    • Year and Date
      2015-09-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 組換えDNMT1を用いた簡便なヒドロキシメチルシトシン1塩基解像度での検出方法2015

    • Author(s)
      高橋沙央里、末武勲、Jan Engelhardt、田嶋正二
    • Organizer
      日本エピジェネティクス研究会第9回年会
    • Place of Presentation
      学術総合センター一ツ橋講堂(東京都千代田区)
    • Year and Date
      2015-05-25
    • Related Report
      2015 Annual Research Report
  • [Presentation] ミセル包含酸化剤を用いた一塩基レベルでの5-ヒドロキシメチルシトシン検出法2015

    • Author(s)
      福沢世傑、高橋沙央里、橘和夫、田嶋正二、末武勲
    • Organizer
      日本エピジェネティクス研究会第10回年会
    • Place of Presentation
      千里ライフサイエンスセンター(大阪府豊中市)
    • Year and Date
      2015-05-19
    • Related Report
      2015 Annual Research Report
  • [Book] Establishment and maintenance of DNA methylation. In DNA replication, recombination, and repair2016

    • Author(s)
      Shoji Tajima, Hironobu Kimura, Isao Suetake
    • Publisher
      Springer
    • Related Report
      2015 Annual Research Report

URL: 

Published: 2015-04-16   Modified: 2017-05-10  

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