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Explicit representation of holistic antibody repertoire by exhaustive RNA sequencing and the antibody expression by reverse genetics.

Research Project

Project/Area Number 15K15159
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Immunology
Research InstitutionNational Institute of Infectious Diseases

Principal Investigator

OHNISHI Kazuo  国立感染症研究所, 免疫部, 主任研究官 (90169011)

Co-Investigator(Kenkyū-buntansha) 藤 博幸  関西学院大学, 理工学部, 教授 (70192656)
野口 保  明治薬科大学, 薬学部, 教授 (00357740)
藤本 浩文  国立感染症研究所, 品質保証・管理部, 室長 (60373396)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2016: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2015: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords抗体レパトア全体像 / 抗体レパトア発生機構 / 自己抗原反応レパトア / 抗原応答抗体予測 / 抗体遺伝子合成 / 抗原抗体反応測定 / VDJ遺伝子再構成制御 / 次世代シークエンサー / プレB細胞受容体 / 次世代シークエンサ / 抗体レパトア / 代替軽鎖 / B細胞分化 / 抗体応答 / VDJ遺伝子再構成 / 立体構造モデリング / 体細胞突然変異
Outline of Final Research Achievements

The novel system for visualization and dynamics analysis of holistic antibody repertoire space, that is generated by V(D)J-rearrangement forming the diversity of antigen recognition, by exhaustive RNA sequencing was successfully established.
The process of mouse antibody repertoire development, the response dynamics of antibody repertoire on antigen stimulation, the expression of important antibody molecules through gene-synthesis and reverse genetics, and the role of pre-B cell receptor on the repertoire formation were examined by the new system and the several important findings were obtained.
This novel analysis system is applicable for the development of antibody drugs against newly emerging infectious diseases and for planning the vaccine developments.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (12 results)

All 2018 2017 2016 2015 Other

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (9 results) Remarks (2 results)

  • [Journal Article] Distorted antibody repertoire developed in the absence of pre-B cell receptor formation2018

    • Author(s)
      Lin Sun, Naoko Kono, Takeyuki Shimizu, Hiroyuki Toh, Hanbing Xue, Osamu Numata, Manabu Ato, Shigeyuki Itamura, Kazuo Ohnishi
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 495 Issue: 1 Pages: 1411-1417

    • DOI

      10.1016/j.bbrc.2017.11.171

    • NAID

      120007134450

    • Related Report
      2017 Annual Research Report 2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Examination of “Universal Light Chain” models that can be paired with a wide spectrum of immunoglobulin heavy chains maintaining their antigen-binding specificities2017

    • Author(s)
      薛漢兵、孫琳、大西和夫
    • Organizer
      第46回日本免疫学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Next Generation Sequencer Analysis of B cell Repertoires in λ5-deficient mice2016

    • Author(s)
      SUN Lin, OHNISHI Kazuo
    • Organizer
      The 45th Annual Meeting of Japanese Society for Immunology
    • Place of Presentation
      Okinawa Convention Center
    • Year and Date
      2016-12-05
    • Related Report
      2016 Research-status Report
  • [Presentation] Designing of 'Universal Light-Chain' that might be able to associate with a wide spectrum of heavy-chains maintaining their antigen-binding specificity2016

    • Author(s)
      XUE Hanbing, SUN Lin, OHNISHI Kazuo
    • Organizer
      The 45th Annual Meeting of Japanese Society for Immunology
    • Place of Presentation
      Okinawa Convention Center
    • Year and Date
      2016-12-05
    • Related Report
      2016 Research-status Report
  • [Presentation] Generation of Amino Acid Indices to Distinguish Two Peptide Groups2016

    • Author(s)
      Miyaki, R., Toh H., Ohnishi, K.
    • Organizer
      CBI学会2016年大会
    • Place of Presentation
      タワーホール船堀
    • Year and Date
      2016-10-25
    • Related Report
      2016 Research-status Report
  • [Presentation] 代替L鎖の分子系統解析2016

    • Author(s)
      藤 博幸, 大西和夫
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡国際会議場
    • Year and Date
      2016-06-07
    • Related Report
      2016 Research-status Report
  • [Presentation] 代替L鎖の分子系統解析2016

    • Author(s)
      藤 博幸、大西 和夫
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Year and Date
      2016-06-07
    • Related Report
      2015 Research-status Report
  • [Presentation] クラスターDNA損傷とその修復酵素の構造解析2015

    • Author(s)
      藤本浩文、樋口真理子、渡辺立子、甲斐健師、藪英治、斎藤公明、Miroslav Pinak、加藤篤
    • Organizer
      BMB2015(第38回日本分子生物学会年会、第88回日本生化学会大会 合同大会)
    • Place of Presentation
      神戸ポートアイランド(神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Presentation] Deep Sequence Landscape of Antibody Repertoire and its Antigen Responding Dynamics of Individual Mice Analyzed by Next Generation Sequencer (NGS)2015

    • Author(s)
      KONO Naoko, XUE Hanbing, SUN Lin, SHIMIZU Takeyuki, OHNISHI Kazuo
    • Organizer
      第44回日本免疫学会
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      2015-11-18
    • Related Report
      2015 Research-status Report
  • [Presentation] Search for a "Universal-IgL" that is able to associate with wide range of IgH species and the optimization of NGS-predicted antibody synthesis2015

    • Author(s)
      SUN Lin, KONO Naoko, SHIMIZU Takeyuki, OHNISHI Kazuo
    • Organizer
      第44回日本免疫学会
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      2015-11-18
    • Related Report
      2015 Research-status Report
  • [Remarks] 免疫機能に関する研究:抗体産生B細胞の発生・分化機構に関する研究

    • URL

      https://www.niid.go.jp/niid/ja/lab/475-imm/938-imm-ko.html

    • Related Report
      2017 Annual Research Report
  • [Remarks] 免疫機能に関する研究:抗体産生B細胞の発生・分化機構に関する研究

    • URL

      http://www.nih.go.jp/niid/ja/lab/475-imm/938-imm-ko.html

    • Related Report
      2016 Research-status Report 2015 Research-status Report

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Published: 2015-04-16   Modified: 2019-03-29  

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