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Genome editing with CRISPR/Cas system for genome-wide functional genomics in the rice blast fungus

Research Project

Project/Area Number 15K18647
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Plant protection science
Research InstitutionKobe University

Principal Investigator

Arazoe Takayuki  神戸大学, 科学技術イノベーション研究科, 学術研究員 (40749975)

Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2016: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywordsゲノム編集 / CRISPR/Cas9 / Target-AID / ポストゲノム / イネいもち病菌 / 麹菌 / 網羅的遺伝子破壊 / AID / CRISPR/Cas9 system / CRISPR/Cas system / 遺伝子ターゲティング / Pyricularia oryzae / 糸状菌
Outline of Final Research Achievements

Simple and efficient functional gene analysis is a one of the most important issues in the post-genomics era. In this study, we exploited a fungal CRISPR/Cas9 system and applied genome editing to genome-wide functional genomics approaches in the rice blast fungus. Using this system, we established highly efficient gene targeting, multiple gene disruption, base modification, and reporter gene knock-in methods. In addition, we developed a novel genome-editing tool, “Target-AID”, which enables targeted nucleotide substitution without a DNA cleavage and donor gene by cytidine deamination. These genome-editing strategies can be used to expand various fundamental approaches and molecular breeding methods in filamentous fungi.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • Research Products

    (43 results)

All 2017 2016 2015 Other

All Int'l Joint Research (12 results) Journal Article (6 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 6 results,  Open Access: 2 results,  Acknowledgement Compliant: 3 results) Presentation (22 results) (of which Int'l Joint Research: 4 results,  Invited: 4 results) Book (1 results) Patent(Industrial Property Rights) (2 results)

  • [Int'l Joint Research] China Agricultural University(China)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] The James Hutton Institute(英国)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Universidad de Guanajuato(Mexico)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] biotech. and drug research(Germany)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Tan University(ベトナム)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Jillin University/Kunming University of Sci. and Tech./Zhejiang University(中国)

    • Related Report
      2015 Research-status Report
  • [Int'l Joint Research] Kansas State University/Univesity of Florida/The Ohio State University(米国)

    • Related Report
      2015 Research-status Report
  • [Int'l Joint Research] University of Exeter/Plant Biology and Crop Science - PBCS(英国)

    • Related Report
      2015 Research-status Report
  • [Int'l Joint Research] Kyung Hee University/Seoul National University(韓国)

    • Related Report
      2015 Research-status Report
  • [Int'l Joint Research] M.S.University/CDFD(インド)

    • Related Report
      2015 Research-status Report
  • [Int'l Joint Research]

    • Related Report
      2015 Research-status Report
  • [Journal Article] Detailed analysis of targeted gene mutations caused by the Platinum-Fungal TALENs in Aspergillus oryzae RIB40 strain and a ligD disruptant2017

    • Author(s)
      Mizutani, O., Arazoe, T., Toshida, K., Hayashi, R., Ohsato, S., Skuma, T., Yamamoto, T., Kuwata, S. and Yamada, O.
    • Journal Title

      Journal of Biotechnology and Bioengineering

      Volume: 3 Issue: 3 Pages: 287-293

    • DOI

      10.1016/j.jbiosc.2016.09.014

    • NAID

      40021152739

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Targeted base editing in rice and tomato using a CRISPR-Cas9 cytidine deaminase fusion2017

    • Author(s)
      Shimatani, Z., Kashojiya, S., Takayama, M., Terada, R., Arazoe, T., Ishii, H., Teramura, H., Yamamoto, T., Komatsu, H., Miura, K., Ezura, H., Nishida, K., Ariizumi, T. and Kondo A.
    • Journal Title

      Nature Biotechnology

      Volume: 印刷中 Issue: 5 Pages: 441-443

    • DOI

      10.1038/nbt.3833

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Future insights in fungal metabolic engineering2017

    • Author(s)
      Wakai, S., Arazoe, T., Ogino, C. and Kondo, A.
    • Journal Title

      Bioresource Technology

      Volume: 印刷中

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Targeted nucleotide substitution in mammalian cell using Target-AID2017

    • Author(s)
      Arazoe, T., Nishida, K. and Kondo, A.
    • Journal Title

      Bioprotocol

      Volume: 印刷中

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems2016

    • Author(s)
      Nishida, K., Arazoe, T., Yachie, N., Banno, S., Kakimoto, M., Tabata, M., Mochizuki, M., Miyabe, A., Araki, M., Hara, K.Y., Shimatani, Z. and Kondo, A.
    • Journal Title

      Science

      Volume: 353 Issue: 6305 Pages: 6305-6305

    • DOI

      10.1126/science.aaf8729

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Tailor-made CRISPR/Cas system for highly efficient targeted gene replacement in the rice blast fungus2015

    • Author(s)
      Arazoe, T., Miyoshi, K., Yamato, T., Ohsato, S., Arie, T. and Kuwata, S.
    • Journal Title

      Biotechnology and Bioengineering

      Volume: 112(12) Issue: 12 Pages: 2543-2549

    • DOI

      10.1002/bit.25662

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] 麹菌におけるゲノム編集ツールの違いによる大規模欠失の検討2017

    • Author(s)
      水谷治,利田賢次,林梨咲,渡嘉敷直杏,荒添貴之,西田敬二,和田悠作,織田健,岩下和裕,山田修,外山博英
    • Organizer
      日本ゲノム編集学会第2回大会
    • Place of Presentation
      千里ライフサイエンスセンター (大阪府・豊中市)
    • Year and Date
      2017-06-28
    • Related Report
      2016 Annual Research Report
  • [Presentation] Target-AIDを用いた糸状菌ゲノムのピンポイント編集2017

    • Author(s)
      荒添貴之,西田敬二,近藤昭彦
    • Organizer
      日本ゲノム編集学会第2回大会
    • Place of Presentation
      千里ライフサイエンスセンター (大阪府・豊中市)
    • Year and Date
      2017-06-28
    • Related Report
      2016 Annual Research Report
  • [Presentation] ゲノムを切らずに書き換えるイネいもち病菌における新規ゲノム編集2017

    • Author(s)
      荒添貴之,西田敬二,田畑麻由良,平岡大輝,中馬いづみ,土佐幸雄,近藤昭彦
    • Organizer
      平成29年度日本植物病理学会大会
    • Place of Presentation
      アイーナ・いわて県民情報交流センター (岩手県・盛岡市)
    • Year and Date
      2017-04-26
    • Related Report
      2016 Annual Research Report
  • [Presentation] CRISPR/Cas9システムを利用した相同組換えによる多重遺伝子同時改変の試み2017

    • Author(s)
      飯田藍,大和澄,荒添貴之,大里修一,桑田茂
    • Organizer
      平成29年度日本植物病理学会大会
    • Place of Presentation
      アイーナ・いわて県民情報交流センター (岩手県・盛岡市)
    • Year and Date
      2017-04-26
    • Related Report
      2016 Annual Research Report
  • [Presentation] HMG-CoA reductase inhibitor FR901512高生産への鍵遺伝子SREBPsに関する解析2017

    • Author(s)
      伊東広哉,松井真,三浦愛,荒添貴之,熊谷俊高,西田敬二,玉野孝一,町田雅之,柴田孝
    • Organizer
      日本農芸化学会2017年度大会
    • Place of Presentation
      京都女子大学 (京都府・京都市)
    • Year and Date
      2017-03-17
    • Related Report
      2016 Annual Research Report
  • [Presentation] 塩基変換による切らないゲノム編集2017

    • Author(s)
      西田敬二,荒添貴之,坂野聡美,近藤昭彦
    • Organizer
      日本農芸化学会2017年度大会
    • Place of Presentation
      京都女子大学 (京都府・京都市)
    • Year and Date
      2017-03-17
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Targeted nucleotide editing in filamentous fungus, Aspergillus oryzae2017

    • Author(s)
      Arazoe, T., Nishida, K., Tabata, M. and Kondo A.
    • Organizer
      The 8th iBioK International Symposium
    • Place of Presentation
      Kobe (Japan)
    • Year and Date
      2017-02-02
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Targeted nucleotide editing in filamentous fungus, Aspergillus oryzae2016

    • Author(s)
      Arazoe, T., Nishida, K., Tabata, M. and Kondo A.
    • Organizer
      The 7th iBioP Asian Symposium
    • Place of Presentation
      Busan (Korea)
    • Year and Date
      2016-12-16
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 麹菌におけるゲノムを切らずに書き換える新規ゲノム編集ツールの確立2016

    • Author(s)
      荒添貴之,西田敬二,田畑麻由良,若井暁,荻野千明,秦洋二,近藤昭彦
    • Organizer
      第16回糸状菌分子生物学コンファレンス
    • Place of Presentation
      京都大学 (京都府・宇治市)
    • Year and Date
      2016-11-17
    • Related Report
      2016 Annual Research Report
  • [Presentation] イネいもち病菌の相同組換え修復に関与するSRS2複合体の相互作用領域2016

    • Author(s)
      富田成美,小川哲央,荒添貴之,桑田茂,草野好司,大里修一
    • Organizer
      平成28年度日本植物病理学会関東部会
    • Place of Presentation
      横浜国立大学 (神奈川県・横浜市)
    • Year and Date
      2016-09-29
    • Related Report
      2016 Annual Research Report
  • [Presentation] 非相同末端結合に関与する遺伝子破壊株における麹菌の TALENs を用いたゲノム編集2016

    • Author(s)
      水谷治,荒添貴之,利田賢次,林梨咲,大里修一,佐久間哲史,山本卓,桑田茂,山田修
    • Organizer
      第68回日本生物工学会大会
    • Place of Presentation
      富山国際会議場 (富山県・富山市)
    • Year and Date
      2016-09-28
    • Related Report
      2016 Annual Research Report
  • [Presentation] 切らないゲノム編集技術2016

    • Author(s)
      西田敬二,荒添貴之,島谷善平,坂野聡美
    • Organizer
      日本植物学会第80回大会
    • Place of Presentation
      沖縄コンベンションセンター (沖縄県・宜野湾市)
    • Year and Date
      2016-09-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] 糸状菌のゲノム編集と応用~イネいもち病菌をモデルとして~2016

    • Author(s)
      荒添貴之,西田敬二,島谷善平,桑田茂,近藤昭彦
    • Organizer
      日本植物学会第80回大会
    • Place of Presentation
      沖縄コンベンションセンター (沖縄県・宜野湾市)
    • Year and Date
      2016-09-16
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 糸状菌のゲノム編集と応用~イネいもち病菌をモデルとして~2016

    • Author(s)
      荒添貴之
    • Organizer
      第80回植物学会シンポジウム
    • Place of Presentation
      沖縄
    • Year and Date
      2016-09-16
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] ゲノムを切らずに書き換える「Target-AID」によるゲノム編集2016

    • Author(s)
      荒添貴之,西田敬二,島谷善平,坂野聡美,近藤昭彦
    • Organizer
      日本ゲノム編集学会第1回大会
    • Place of Presentation
      広島国際会議場 (広島県・広島市)
    • Year and Date
      2016-09-06
    • Related Report
      2016 Annual Research Report
  • [Presentation] 麹菌野生株及び ligD 遺伝子破壊株を宿主とした Platinum-Fungal TALENs を用いたゲノム編集2016

    • Author(s)
      水谷治,荒添貴之,利田賢次,林梨咲,大里修一,佐久間哲史,山本卓,桑田茂,山田修
    • Organizer
      日本ゲノム編集学会第1回大会
    • Place of Presentation
      広島国際会議場 (広島県・広島市)
    • Year and Date
      2016-09-06
    • Related Report
      2016 Annual Research Report
  • [Presentation] 糸状菌型CRISPR/Cas systemの開発とイネいもち病菌における高効率標的遺伝子ノックアウト・ノックイン・塩基置換導入法2016

    • Author(s)
      大和 澄,荒添貴之,三好健之介,小川哲央,大里修一,有江 力,桑田 茂
    • Organizer
      平成28年度日本植物病理学会大会
    • Place of Presentation
      岡山
    • Year and Date
      2016-03-21
    • Related Report
      2015 Research-status Report
  • [Presentation] ゲノムを切らずに書き換える新規ゲノム編集技術の確立と展開2016

    • Author(s)
      荒添貴之
    • Organizer
      動物生殖内分泌組織の機能制御と高度環境適応植物のデザインのための研究戦略シンポジウム
    • Place of Presentation
      明治大学 (神奈川県・川崎市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Genome editing in the rice blast fungus with CRISPR/Cas system2015

    • Author(s)
      Arazoe, T., Nishida, K., Kuwata, S., Kondo, A.
    • Organizer
      The 6th iBioK Asian symposium
    • Place of Presentation
      兵庫
    • Year and Date
      2015-12-07
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Targeted base exchange-mediated genome editing2015

    • Author(s)
      Nishida, K., Banno, S., Arazoe, T., Shimatani, Z. and Kondo, A.
    • Organizer
      BMB2015
    • Place of Presentation
      兵庫
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] 糸状菌型 CRISPR/Cas システムを用いたイネいもち病菌における高効率標的遺伝子ノックアウト・ノックイン・塩基置換導入法2015

    • Author(s)
      荒添貴之,三好健之介,大和 澄,小川哲央,大里修一,有江 力,桑田 茂
    • Organizer
      第15回糸状菌分子生物学コンファレンス
    • Place of Presentation
      東京
    • Year and Date
      2015-11-19
    • Related Report
      2015 Research-status Report
  • [Presentation] Platinum-Fungal TALENs を用いた麹菌におけるゲノム編集2015

    • Author(s)
      水谷治, 荒添貴之, 利田賢次, 林梨咲, 大里修一, 佐久間哲史, 山本卓, 桑田茂, 山田 修
    • Organizer
      第67回日本生物工学会大会
    • Place of Presentation
      鹿児島
    • Year and Date
      2015-10-26
    • Related Report
      2015 Research-status Report
  • [Book] ゲノム編集入門-ZFN・TALEN・CRISPR-Cas9-2016

    • Author(s)
      山本卓,石野良純,近藤昭彦,西田敬二,荒添貴之,丹波隆介,坂本尚昭,秦松清人,川原敦雄,鈴木賢一,宮坂佳樹,真下知士,安本周平,村中俊哉,宮本達雄,田中伸和
    • Total Pages
      226
    • Publisher
      裳華房
    • Related Report
      2016 Annual Research Report
  • [Patent(Industrial Property Rights)] ゲノム配列改変技術における変異導入効率の向上方法、及びそれに用いる分子複合体2016

    • Inventor(s)
      荒添貴之,西田敬二,島谷善平,近藤昭彦
    • Industrial Property Rights Holder
      国立大学法人神戸大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2016-085631
    • Filing Date
      2016-04-21
    • Related Report
      2016 Annual Research Report
  • [Patent(Industrial Property Rights)] ゲノム配列改変技術における変異導入効率の向上方法、及びそれに用いる分子複合体2016

    • Inventor(s)
      荒添貴之、西田啓二、島谷善平、近藤昭彦
    • Industrial Property Rights Holder
      荒添貴之、西田啓二、島谷善平、近藤昭彦
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2016-085631
    • Filing Date
      2016-04-21
    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2022-02-16  

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