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Structural characterization of conformational transition of amyloid beta peptide promoted on ganglioside clusters

Research Project

Project/Area Number 15K21680
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Biophysics
Functional biochemistry
Research InstitutionOkazaki Research Facilities, National Institutes of Natural Sciences

Principal Investigator

YAGI Maho  大学共同利用機関法人自然科学研究機構(岡崎共通研究施設), 岡崎統合バイオサイエンスセンター, 助教 (40608999)

Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2016: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2015: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywordsアミロイドβ / ガングリオシド / 固体NMR / 糖脂質 / アルツハイマー病 / アミロイド / 脂質膜
Outline of Final Research Achievements

In this study, solid-state nuclear magnetic resonance spectroscopy has elucidated the membrane-induced conformation of amyloid (Aβ), in which the disordered N-terminal segment is followed by the stable C-terminal β strand. The data obtained in this project provides insights into the molecular processes of the conformational transition of Aβ coupled with its assembly into parallel β structures.
Structural and kinetic analyses of the Flemish-type mutant (A21G) of Aβ(1-40) peptide were also performed in comparison with the wild type to examine the possible effects of the A21G mutation on the conformation of the Aβ(1-40) isoform. These findings suggest that the mutational perturbation to the membrane binding properties is coupled with the changes in nucleation behavior of Aβ during its fibril formation.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • Research Products

    (29 results)

All 2017 2016 2015 Other

All Int'l Joint Research (2 results) Journal Article (13 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 13 results,  Acknowledgement Compliant: 8 results,  Open Access: 6 results) Presentation (10 results) (of which Int'l Joint Research: 5 results,  Invited: 5 results) Book (3 results) Remarks (1 results)

  • [Int'l Joint Research] University of Cambridge(英国)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] University of Cambridge(英国)

    • Related Report
      2015 Research-status Report
  • [Journal Article] Crystal structure of human proteasome assembly chaperone PAC4 involved in proteasome formation2017

    • Author(s)
      Eiji Kurimoro, Tadashi Satoh, Yuri Ito, Eri Ishihara, Kenta Okamoto, Maho Yagi-Utsumi, Keiji Tanaka, and Koichi Kato
    • Journal Title

      Protein Sci.

      Volume: 26 Issue: 5 Pages: 1080-1085

    • DOI

      10.1002/pro.3153

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] NMR構造生物学がもたらす新たな創薬研究のツール2016

    • Author(s)
      加藤晃一, 谷中冴子, 矢木-内海真穂
    • Journal Title

      MEDCHEM NEWS

      Volume: 26 Pages: 195-200

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mass Spectrometric Characterization of HIV-1 Reverse Transcriptase Interactions with Non-nucleoside Reverse Transcriptase Inhibitors2016

    • Author(s)
      Thammaporn R, Ishii K, Yagi-Utsumi M, Uchiyama S, Hannongbua S, Kato K.
    • Journal Title

      Biological and Pharmaceutical Bulletin

      Volume: 39 Issue: 3 Pages: 450-454

    • DOI

      10.1248/bpb.b15-00880

    • NAID

      130005132309

    • ISSN
      0918-6158, 1347-5215
    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] An anticancer drug suppresses the primary nucleation reaction that initiates the production of the toxic Aβ42 aggregates linked with Alzheimer's disease.2016

    • Author(s)
      Habchi J, Arosio P, Perni M, Costa AR, Yagi-Utsumi M, Joshi P, Chia S, Cohen SI, Müller MB, Linse S, Nollen EA, Dobson CM, Knowles TP, Vendruscolo M.
    • Journal Title

      Sci Adv.

      Volume: 12 Issue: 2

    • DOI

      10.1126/sciadv.1501244

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Application of Site-Specific Spin Labeling for NMR Detecting Inhibitor-Induced Conformational Change of HIV-1 Reverse Transcriptase.2016

    • Author(s)
      Seetaha S, Yagi-Utsumi M, Yamaguchi T, Ishii K, Hannongbua S, Choowongkomon K, Kato K.
    • Journal Title

      ChemMedChem

      Volume: 11 Issue: 4 Pages: 363-366

    • DOI

      10.1002/cmdc.201500554

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] Membrane-Induced Dichotomous Conformation of Amyloid β with the Disordered N-Terminal Segment Followed by the Stable C-Terminal β Structure.2016

    • Author(s)
      Yagi-Utsumi M, Kato K, Nishimura K.
    • Journal Title

      PLoS One

      Volume: 11 Issue: 1 Pages: e0146405-e0146405

    • DOI

      10.1371/journal.pone.0146405

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] NMR characterization of HIV-1 reverse transcriptase binding to various non-nucleoside reverse transcriptase inhibitors with different activities.2015

    • Author(s)
      Thammaporn R, Yagi-Utsumi M, Yamaguchi T, Boonsri P, Saparpakorn P, Choowongkomon K, Techasakul S, Kato K, Hannongbua S
    • Journal Title

      Sci Rep

      Volume: 5 Issue: 1 Pages: 15806-15806

    • DOI

      10.1038/srep15806

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structure-Free Validation of Residual Dipolar Coupling and Paramagnetic Relaxation Enhancement Measurements of Disordered Proteins.2015

    • Author(s)
      Newby FN, De Simone A, Yagi-Utsumi M, Salvatella X, Dobson CM, Vendruscolo M.
    • Journal Title

      Biochemistry

      Volume: 54 Issue: 46 Pages: 6876-6886

    • DOI

      10.1021/acs.biochem.5b00670

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Conformational Effects of the A21G Flemish Mutation on the Aggregation of Amyloid β Peptide2015

    • Author(s)
      Yagi-Utsumi M, Dobson CM.
    • Journal Title

      Biological and Pharmaceutical Bulletin

      Volume: 38 Issue: 10 Pages: 1668-1672

    • DOI

      10.1248/bpb.b15-00466

    • NAID

      130005101571

    • ISSN
      0918-6158, 1347-5215
    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Structural basis of redox-dependent substrate binding of protein disulfide isomerase.2015

    • Author(s)
      Yagi-Utsumi M, Satoh T, Kato K.
    • Journal Title

      Sci Rep

      Volume: 5 Issue: 1 Pages: 13909-13909

    • DOI

      10.1038/srep13909

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Redox-coupled structural changes of the catalytic a' domain of protein disulfide isomerase.2015

    • Author(s)
      Inagaki K, Satoh T, Yagi-Utsumi M, Le Gulluche AC, Anzai T, Uekusa Y, Kamiya Y, Kato K.
    • Journal Title

      FEBS Lett

      Volume: 589 Issue: 19PartB Pages: 2690-2694

    • DOI

      10.1016/j.febslet.2015.07.041

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] A Self-Assembled Spherical Complex Displaying a Gangliosidic Glycan Cluster Capable of Interacting with Amyloidogenic Proteins.2015

    • Author(s)
      Sato S, Yoshimasa Y, Fujita D, Yagi-Utsumi M, Yamaguchi T, Kato K, Fujita M.
    • Journal Title

      Angew Chem Int Ed Engl.

      Volume: 54 Issue: 29 Pages: 8435-8439

    • DOI

      10.1002/anie.201501981

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Structural and dynamic views of GM1 ganglioside.2015

    • Author(s)
      Yagi-Utsumi M, Kato K.
    • Journal Title

      Glycoconj J

      Volume: 32 Issue: 3-4 Pages: 105-112

    • DOI

      10.1007/s10719-015-9587-5

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] タンパク質の構造ダイナミクスと分子集合メカニズムの理解を目指して2016

    • Author(s)
      矢木真穂
    • Organizer
      分子研若手の会
    • Place of Presentation
      分子科学研究所(愛知県岡崎市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] NMR Characterization of Conformational Transition of Amyloid-β Promoted in Membrane Environments2016

    • Author(s)
      Maho Yagi-Utsumi, Katsuyuki Nishimura, and Koichi Kato
    • Organizer
      the 17th International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      京都国際会議場(京都府京都市)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Interactions of amyloidogenic proteins with membranes and molecular chaperones2016

    • Author(s)
      Maho Yagi-Utsumi and Koichi Kato
    • Organizer
      the 17th International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      京都国際会議場(京都府京都市)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural basis for interactions of molecular chaperones with natively unstructured proteins involved in neurodegenerative diseases2016

    • Author(s)
      Maho Yagi-Utsumi, Tadashi Satoh, and Koichi Kato
    • Organizer
      The 42nd Naito Conference
    • Place of Presentation
      シャトレーゼ・ガトーキングダムサッポロ(北海道札幌市)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Structural basis for interactions of molecular chaperones with intrinsically disordered proteins2016

    • Author(s)
      Maho Yagi-Utsumi, Tadashi Satoh, and Koichi Kato
    • Organizer
      The 9th Korea-Japan Seminars on Biomolecular Sciences: Experiments and Simulations
    • Place of Presentation
      Commodore Hotel Gyeongju(Gyeongju、Korea)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural views of dynamical ordering of biomolecule2016

    • Author(s)
      Maho Yagi-Utsumi
    • Organizer
      Okazaki Institute for Integrative Bioscience Retreat 2016
    • Place of Presentation
      三河湾リゾートリンクス(愛知県西尾市)
    • Related Report
      2016 Annual Research Report
  • [Presentation] NMR characterization of conformational transition of amyloid- peptidepromoted on ganglioside clusters2015

    • Author(s)
      Maho Yagi-Utsumi, Katsuyuki Nishimura, and Koichi Kato
    • Organizer
      The 2015 International Chemical Congress of Pacific Basin Societies
    • Place of Presentation
      Honolulu (Hawaii, USA)
    • Year and Date
      2015-12-15
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] 神経変性疾患関連タンパク質と分子シャペロンとの相互作用の構造基盤2015

    • Author(s)
      矢木真穂,佐藤匡史,山口拓実, 加藤晃一
    • Organizer
      第38回日本分子生物学会年会、第88回日本生化学会大会 合同大会(BMB2015)
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] ガングリオシドクラスターを舞台とする神経変性疾患関連タンパク質の構造転移2015

    • Author(s)
      矢木真穂,加藤晃一
    • Organizer
      第15回 日本蛋白質科学会年会
    • Place of Presentation
      あわぎんホール(徳島県徳島市)
    • Year and Date
      2015-06-26
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] プロテインジスルフィドイソメラーゼの基質認識の構造基盤の解明2015

    • Author(s)
      矢木真穂,佐藤匡史,加藤晃一
    • Organizer
      第79回日本生化学会中部支部例会
    • Place of Presentation
      信州大学(長野県松本市)
    • Year and Date
      2015-05-23
    • Related Report
      2015 Research-status Report
  • [Book] NMR in Glycoscience and Glycotechnology2017

    • Author(s)
      M.Yagi-Utsumi, T.Yamaguchi, Y.Uekusa, and K.Kato
    • Total Pages
      396
    • Publisher
      RSC Publishing
    • Related Report
      2016 Annual Research Report
  • [Book] Molecular Science of Fluctuations Toward Biological Functions2016

    • Author(s)
      M.Yagi-Utsumi, T.Yamaguchi, R.Kitahara, and K.Kato
    • Total Pages
      276
    • Publisher
      Springer
    • Related Report
      2016 Annual Research Report
  • [Book] Molecular Science of Fluctuations Toward Biological Functions2016

    • Author(s)
      Maho Yagi-Utsumi, Takumi Yamaguchi, Ryo Kitahara, and Koichi Kato
    • Total Pages
      276
    • Publisher
      Springer
    • Related Report
      2015 Research-status Report
  • [Remarks] 岡崎統合バイオサイエンスセンター生命分子研究部門

    • URL

      https://groups.ims.ac.jp/organization/kkato_g/rombun/index.html

    • Related Report
      2016 Annual Research Report

URL: 

Published: 2015-04-16   Modified: 2022-02-16  

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