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Identification of beneficial genes on non-recombining regions by using heavy-ion deletion mapping(Fostering Joint International Research)

Research Project

Project/Area Number 15KK0264
Research Category

Fund for the Promotion of Joint International Research (Fostering Joint International Research)

Allocation TypeMulti-year Fund
Research Field Science in genetics and breeding
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Kazama Yusuke  国立研究開発法人理化学研究所, 仁科加速器科学研究センター, チームリーダー (80442945)

Research Collaborator Filatov Dmitry A.  オックスフォード大学, 植物科学部, 教授
Krasovec Marc  
Project Period (FY) 2016 – 2018
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥15,600,000 (Direct Cost: ¥12,000,000、Indirect Cost: ¥3,600,000)
Keywords重イオンビーム / 雌雄異株植物 / ヒロハノマンテマ / 性染色体 / 性決定 / 遺伝子量補正 / Y染色体進化
Outline of Final Research Achievements

Some plants have distinct male and female individuals. One of them, Silene latifolia has XY-type sex chromosomes. We induced large deletions in the Y chromosome with heavy-ion beams, and constructed a gene map of the Y chromosome based on the arrangement of the deleted genes. Genoe sequencing of mutants with small deletions which have hermaphroditic flowers was conducted to identify the candidate genes that suppress the development of pistil. On the other hand, exhaustive gene expression analysis was carried out on large deletion mutants, revialing that the expression levels of the X-linked genes were doubled if a specific Y chromosome region was deleted. This result suggests that plant chromosomes have the gene dosage compensation which balances the expression level of X chromosome gene uniform between male and female and that the dosage compensation occurs immediately after loss of Y-linked genes.

Academic Significance and Societal Importance of the Research Achievements

我々は、独自に作製したY染色体地図を活用することで、植物性染色体がオスとメスのX染色体連鎖遺伝子の発現量を均一に保つ「遺伝子量補正機構」をもち、それはY染色体上の一部の領域が欠落するとすぐに働くことを発見した。本発見は、植物性染色体が動物と同様の遺伝子量補正機構を獲得しうることを示した。さらに、遺伝子量補正は進化の過程で遺伝子ごとに徐々に起るのではなく、ひとたびY染色体上の相同遺伝子がなくなると即座に生じることを初めて捉えたという点で学術的に意義深い研究成果といえる。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • Research Products

    (13 results)

All 2019 2018 2017 2016

All Int'l Joint Research (1 results) Journal Article (6 results) (of which Peer Reviewed: 3 results,  Open Access: 1 results) Presentation (6 results) (of which Int'l Joint Research: 1 results,  Invited: 3 results)

  • [Int'l Joint Research] オックスフォード大学(英国)2017

    • Year and Date
      2017-01-15
    • Related Report
      2018 Annual Research Report
  • [Journal Article] Development of the VIGS System in the Dioecious Plant Silene latifolia2019

    • Author(s)
      Fujita Naoko、Kazama Yusuke、Yamagishi Noriko、Watanabe Kyoko、Ando Saki、Tsuji Hiroyuki、Kawano Shigeyuki、Yoshikawa Nobuyuki、Komatsu Ken
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 20 Issue: 5 Pages: 1031-1031

    • DOI

      10.3390/ijms20051031

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Chromosomal rearrangement: from induction by heavy-ion irradiation to in vivo engineering by genome editing2018

    • Author(s)
      Kazama Y, Hirano T, Abe T, Matsunaga S
    • Journal Title

      Cytologia

      Volume: 印刷中

    • NAID

      130007394032

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Different mutational function of low‐ and high‐linear energy transfer heavy‐ion irradiation demonstrated by whole‐genome resequencing of Arabidopsis mutants2017

    • Author(s)
      Kazama Y, Ishiii K, Hirano T, Wakana T, Yamada M, Ohbu S, Abe T
    • Journal Title

      The Plant Journal

      Volume: 92 Issue: 6 Pages: 1020-1030

    • DOI

      10.1111/tpj.13738

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] 高校生物と植物の性染色体2017

    • Author(s)
      風間 裕介、石井 公太郎、阿部 知子、半本 秀博、河野 重行
    • Journal Title

      生物の科学 遺伝

      Volume: 71 Pages: 262-268

    • Related Report
      2016 Research-status Report
  • [Journal Article] 植物巨大Y染色体の遺伝子地図作成に成功ーY染色体は進化の過程で大きな逆位を起こしていた2016

    • Author(s)
      風間 裕介、石井 公太郎、阿部 知子
    • Journal Title

      生物の科学 遺伝

      Volume: 70 Pages: 394-397

    • Related Report
      2016 Research-status Report
  • [Journal Article] 重イオンビーム育種によるグリーンイノベーションの創出2016

    • Author(s)
      風間 裕介、平野 智也、大田 修平、佐藤 陽一、村井 耕二、河野 重行、小野 克徳、阿部 知子
    • Journal Title

      作物研究

      Volume: 61 Pages: 73-79

    • NAID

      130006900252

    • Related Report
      2016 Research-status Report
  • [Presentation] 重イオンビーム誘発変異体を用いた植物性染色体の研究2019

    • Author(s)
      風間裕介
    • Organizer
      第1回重・クラスターイオンビーム利用による微生物由来高生産性、エネルギー、環境シンポジウム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Highly efficient induction of chromosomal rearrangement by heavy-ion irradiation in the model plant Arabidopsis thaliana2018

    • Author(s)
      Kazama Y, Ishii K, Hirano T, Yamada M, Ohbu S, Abe T
    • Organizer
      EMBO|EMBL Symposium: Principles of Chromosome Structure and Function
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ウイルスベクターを利用したヒロハノマンテマの遺伝子機能解析系の確立2018

    • Author(s)
      藤田尚子, 風間裕介, 山岸紀子, 安藤咲, 辻寛之, 吉川信幸, 小松健
    • Organizer
      日本植物学会第82回大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 難しいけど面白い!植物巨大Y染色体の研究2018

    • Author(s)
      風間裕介
    • Organizer
      第4回農学中手の会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 重イオンビームの変異特性に関する研究とそれを利用した植物巨大Y染色体の精密マッピング2017

    • Author(s)
      風間 裕介
    • Organizer
      日本植物学会第81回大会
    • Related Report
      2017 Research-status Report
    • Invited
  • [Presentation] Deletion mapping of the plant huge Y chromosome by employing traveling salesman problem.2017

    • Author(s)
      Kazama Y
    • Organizer
      Oxford Congress on Plant Sciences 2017
    • Related Report
      2017 Research-status Report
    • Invited

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Published: 2016-10-04   Modified: 2020-03-30  

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