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Plant species and genetic diversity assessment of tropical forests in Southeast Asia

Research Project

Project/Area Number 16H02553
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Forest science
Research InstitutionTohoku University

Principal Investigator

Suyama Yoshihisa  東北大学, 農学研究科, 准教授 (60282315)

Co-Investigator(Kenkyū-buntansha) 舘田 英典  九州大学, 理学研究院, 教授 (70216985)
矢原 徹一  九州大学, 理学研究院, 教授 (90158048)
Research Collaborator MITSUYUKI Chika  
MATSUO Ayumi  
TAGANE Shuichiro  
TOYAMA Hironori  
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥40,300,000 (Direct Cost: ¥31,000,000、Indirect Cost: ¥9,300,000)
Fiscal Year 2018: ¥12,480,000 (Direct Cost: ¥9,600,000、Indirect Cost: ¥2,880,000)
Fiscal Year 2017: ¥14,950,000 (Direct Cost: ¥11,500,000、Indirect Cost: ¥3,450,000)
Fiscal Year 2016: ¥12,870,000 (Direct Cost: ¥9,900,000、Indirect Cost: ¥2,970,000)
Keywords熱帯林保全 / 新種 / 分子系統解析 / 種同定 / 次世代シーケンシング / 熱帯林 / 生物多様性 / ゲノムワイドDNA分析 / MIG-seq法 / 分子系統 / 集団遺伝 / ゲノムワイドSNP分析
Outline of Final Research Achievements

Tropical forests in Southeast Asia are known as one of the global centers of species richness, and also as the area where forest loss is most rapid. However, it remains uncertain how many species of vascular plants are there. Therefore, we conducted a new method of molecular phylogenetic analysis for more than 10,000 vascular plant species collected from more than 100 research plots in Southeast Asia. Consequently, we discovered more than 100 new species and newly recorded species in several countries.

Academic Significance and Societal Importance of the Research Achievements

様々な生物種の間の系統関係や種を同定するための遺伝学的データを取得するために、研究代表者らが開発したDNA分析手法を改良するとともに、新たに複数の「DNAバーコーディング」領域を同時に簡便に解析する手法を開発した。これらの手法を組み合わせることにより、これまで解析が困難であった近縁種群等であっても、簡便で正確な解析が可能であることを示した。主な成果として、東南アジア各地の森林で数多くの新種・新産地記載種を発見したことで、破壊が進む各地の熱帯林の生物多様性を正確に評価することにつながり、このことが熱帯林保全の学術的根拠の一つとなることで、将来にわたる生態系サービスの享受に繋がることが期待される。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (38 results)

All 2019 2018 2017 2016 Other

All Int'l Joint Research (5 results) Journal Article (7 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 7 results,  Open Access: 6 results) Presentation (25 results) (of which Int'l Joint Research: 11 results,  Invited: 8 results) Book (1 results)

  • [Int'l Joint Research] Dalat University(ベトナム)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Laos National University(ラオス)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Forest Administration(カンボジア)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Forest Herbarium(タイ)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Dalat University(ベトナム)

    • Related Report
      2017 Annual Research Report
  • [Journal Article] 森林遺伝育種学的研究におけるMIG-seq 法の利用2019

    • Author(s)
      陶山佳久
    • Journal Title

      Forest Genetics and Tree Breeding

      Volume: 8 Issue: 2 Pages: 85-89

    • DOI

      10.32135/fgtb.8.2_85

    • NAID

      130007637943

    • ISSN
      2187-3453, 2187-350X
    • Year and Date
      2019-04-25
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Inferring the demographic history of Japanese cedar, Cryptomeria japonica, using amplicon sequencing2019

    • Author(s)
      Moriguchi Natsuki、Uchiyama Kentaro、Miyagi Ryutaro、Moritsuka Etsuko、Takahashi Aya、Tamura Koichiro、Tsumura Yoshihiko、Teshima Kosuke M.、Tachida Hidenori、Kusumi Junko
    • Journal Title

      Heredity

      Volume: - Issue: 3 Pages: 371-383

    • DOI

      10.1038/s41437-019-0198-y

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Two New Species of <i>Neolitsea </i>(Lauraceae), <i>N. kraduengensis </i>from Thailand and <i>N. vuquangensis </i>from Vietnam and an Analysis of their Phylogenetic Positions using ITS sequences2018

    • Author(s)
      Mitsuyuki C, Tagane S, Ngyuen VN, Hoang TB, Suddee S, Ruangruea S, Toyama H, Mase K, Yang C, Naiki A and Yahara T
    • Journal Title

      Acta phytotaxonomica et geobotanica

      Volume: 69 Issue: 3 Pages: 161-173

    • DOI

      10.18942/apg.201810

    • NAID

      130007506112

    • ISSN
      1346-7565, 2189-7042
    • Year and Date
      2018-10-31
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Effects of cyclic changes in population size on neutral genetic diversity2018

    • Author(s)
      Haruna Nakamura, Kosuke Teshima, Hidenori Tachida
    • Journal Title

      Ecology and Evolution

      Volume: 8 Issue: 18 Pages: 9362-9371

    • DOI

      10.1002/ece3.4436

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A new species and two new records of Quercus (Fagaceae) from northern Vietnam2018

    • Author(s)
      Binh Hoang Thi、Ngoc Nguyen Van、Bon Trinh Ngoc、Tagane Shuichiro、Suyama Yoshihisa、Yahara Tetsukazu
    • Journal Title

      PhytoKeys

      Volume: 92 Pages: 1-15

    • DOI

      10.3897/phytokeys.92.21831

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Lithocarpus vuquangensis (Fagaceae), a new species from Vu Quang National Park, Vietnam2017

    • Author(s)
      Nguyen VN, Nguyen VH, Hoang TB, Tagane S, Toyama H, Thanh SH, Tran VH and Yahara T
    • Journal Title

      PhytoKeys

      Volume: 95 Pages: 15-25

    • DOI

      10.3897/phytokeys.95.21832

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A taxonomic study of Quercus langbianensis complex based on morphology and DNA barcodes of classic and next generation sequences2017

    • Author(s)
      Hoang TB, Nguyen VN, Tagane S, Toyama H, Mase K, Mitsuyuki C, Strijk JS, Suyama Y and Yahara T
    • Journal Title

      PhytoKeys

      Volume: 95 Pages: 37-70

    • DOI

      10.3897/phytokeys.95.21126

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] ベトナムのランビアン山における樹木の種構成と開花・結実フェノロジー2019

    • Author(s)
      永濱藍・田金秀一郎・Zhang Meng・土屋考人・陶山佳久・松尾歩・廣田峻・森塚絵津子・Nguyen Van Ngoc・Hoang Thi Binh・永益英敏・内貴章世・遠山弘法・矢原徹一
    • Organizer
      日本植物分類学会第18回大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] MIG-seqとマルチDNAバーコーディングによるNGSベースの種・品種識別2019

    • Author(s)
      松尾歩, 廣田峻, 綱本良啓, 満行知花, 岡野邦宏, 陶山佳久
    • Organizer
      第66回日本生態学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 東南アジアの植物多様性評価2019

    • Author(s)
      田金秀一郎, 満行知花, 陶山佳久, 矢原徹一
    • Organizer
      第66回日本生態学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] MIG-seq法を用いた絶滅危惧植物の保全遺伝学的解析2019

    • Author(s)
      陶山佳久
    • Organizer
      第66回日本生態学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] MIG-seq法:次世代シーケンサーを用いた手軽なゲノムワイド塩基配列分析2019

    • Author(s)
      陶山佳久
    • Organizer
      日本農芸化学会2019年度東京大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] MIG-seq and multiplexed DNA barcoding: an efficient combination for molecular phylogenetic analysis2018

    • Author(s)
      Yoshihisa Suyama, Ayumi Matsuo, Shun Hirota, Chika Mitsuyuki, Tetsukazu Yahara
    • Organizer
      7th International Legumue Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Legume diversity assessment as an example of plant diversity assessment2018

    • Author(s)
      Tetsukazu Yahara
    • Organizer
      7th International Legumue Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] MIG-seq and multiplexed DNA barcoding: efficient tool for phylogeography and conservation genetics2018

    • Author(s)
      Yoshihisa Suyama, Ayumi Matsuo, Shun Hirota
    • Organizer
      The 2nd International Academic Conference on the Formation Mechanism of Plant Diversity and Conservation of Endangered Plants in East Asia
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 次世代シーケンサーを用いた手軽な分子系統・集団遺伝解析2018

    • Author(s)
      陶山佳久
    • Organizer
      日本生態学会東北地区会第63回弘前大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] MIG-seq法:次世代シーケンサーを用いた手軽なゲノムワイド塩基配列分析2018

    • Author(s)
      陶山佳久、松尾歩、廣田峻
    • Organizer
      日本DNA多型学会第27回学術集会
    • Related Report
      2018 Annual Research Report
  • [Presentation] MIG-seqとマルチプレックスDNAバーコーディングによる分子系統・集団遺伝解析2018

    • Author(s)
      陶山佳久
    • Organizer
      第50回種生物学シンポジウム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Advanced approaches to the study of genetic and phylogenetic diversity in tropical forests2018

    • Author(s)
      Yoshihisa Suyama
    • Organizer
      Workshop on the ecological research of plant diversity and forest ecosystem in Bidoup - Nui Ba National Park and surrounding areas
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Introduction to plant diversity of Bi Doup - Nui Ba NP and surrounding areas2018

    • Author(s)
      Tetsukazu Yahara
    • Organizer
      Workshop on the ecological research of plant diversity and forest ecosystem in Bidoup - Nui Ba National Park and surrounding areas
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 改良MIG-seq法の概要2018

    • Author(s)
      陶山佳久,綱本良啓,満行知花
    • Organizer
      第65回日本生態学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 東南アジア熱帯林構成種における多数の新種発見に活かされるMIG-seq2018

    • Author(s)
      満行知花,田金秀一郎,遠山弘法,間瀬慶子,矢原徹一,松尾歩,陶山佳久
    • Organizer
      第65回日本生態学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] MIG-seq:NGSを用いた迅速で簡単な多型解析法2018

    • Author(s)
      綱本良啓,満行知花,陶山佳久
    • Organizer
      第65回日本生態学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] MIG-seq法による熱帯林樹木の保全遺伝学的研究2017

    • Author(s)
      満行知花、綱本良啓、陶山佳久
    • Organizer
      第128回日本森林学会大会
    • Place of Presentation
      鹿児島大学農学部(鹿児島県鹿児島市)
    • Year and Date
      2017-03-26
    • Related Report
      2016 Annual Research Report
  • [Presentation] MIG-seq 法を用いたクスノキ科シロダモ属の系統関係解析2017

    • Author(s)
      満行知花、田金秀一郎、矢原徹一、陶山佳久
    • Organizer
      第64回日本生態学会大会
    • Place of Presentation
      早稲田大学早稲田キャンパス(東京都新宿区)
    • Year and Date
      2017-03-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] MIG-seq: efficient PCR-based method for genome-wide sequencing2017

    • Author(s)
      Yoshihisa Suyama, Chika Mitsuyuki, Yoshihiro Tsunamoto
    • Organizer
      Evolution 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] MIG-seq: efficient PCR-based method for genome-wide sequencing using NGS2017

    • Author(s)
      Yoshihisa Suyama, Gustavo M Mori, Chika Mitsuyuki, Yoshihiro Tsunamoto
    • Organizer
      XIX International Botanical Congress
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Diversity of tropical forests in South East Asia under the threat of rapid loss2017

    • Author(s)
      Tetsukazu Yahara
    • Organizer
      XIX International Botanical Congress
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] MIG-seq: an efficient PCR-based method for genome-wide genotyping2017

    • Author(s)
      Yoshihisa Suyama
    • Organizer
      IUFRO 2017 Genetics & Genomics of Fagaceae
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] A taxonomic study of Quercus langbianensis complex based on morphology, and DNA barcodes of classic and next generation sequences2017

    • Author(s)
      Hoang Thi Binh, Nguyen Van Ngoc, Shuichiro Tagane, Hironori Toyama, Keiko Mase, Chika Mitsuyuki, Joeri S. Strijk, Yoshihisa Suyama, Tetsukazu Yahara
    • Organizer
      IUFRO 2017 Genetics & Genomics of Fagaceae
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Genome-wide DNA barcoding: new concept of species identification tool using next-generation sequencing2017

    • Author(s)
      Yoshihisa Suyama, Chika Mitsuyuki, Motomi Ito, Tetsukazu Yahara
    • Organizer
      7th International Barcode of Life Conference
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] MIG-seqライブラリ構築法の改良2016

    • Author(s)
      満行知花、綱本良啓、陶山佳久
    • Organizer
      第48回種生物学シンポジウム
    • Place of Presentation
      キロロトリビュートポートフォリオホテル北海道(北海道余市郡赤井川村)
    • Year and Date
      2016-12-05
    • Related Report
      2016 Annual Research Report
  • [Book] A Picture Guide for the Flora of Bidoup Nui Ba National Park I: Mt. Langbian2019

    • Author(s)
      Ai Nagahama, Shuichiro Tagane, Nguyen Van Ngoc, Binh Hoang Thi, Truong Quang Cuong, Hironori Toyama, Hidetoshi Nagamasu, Kojin Tsuchiya, Zhang Meng, Thu Nguyen Thi Anh, Nguyen Cuong Thinh, Yoshihisa Suyama, Ayumi Matsuo, Shun Hirota, Etsuko Moritsuka, Akiyo Naiki, Le Van Son, Pham Huu Nhan, Tetsukazu Yahara
    • Total Pages
      134
    • Publisher
      Center for Asian Conservation Ecology, Kyushu University
    • Related Report
      2018 Annual Research Report

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Published: 2016-04-21   Modified: 2020-03-30  

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