• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Discovery of drug resistant mechnism by kinome analysis using patient derived cultured cells

Research Project

Project/Area Number 16H04707
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Tumor diagnostics
Research InstitutionNational Institutes of Biomedical Innovation, Health and Nutrition

Principal Investigator

Tomonaga Takeshi  国立研究開発法人医薬基盤・健康・栄養研究所, 医薬基盤研究所 創薬デザイン研究センター, 上級研究員 (80227644)

Co-Investigator(Kenkyū-buntansha) 西尾 誠人  公益財団法人がん研究会, 有明病院 呼吸器内科, 部長 (00281593)
藤田 直也  公益財団法人がん研究会, がん化学療法センター, 所長 (20280951)
片山 量平  公益財団法人がん研究会, がん化学療法センター 基礎研究部, 部長 (60435542)
長山 聡  公益財団法人がん研究会, 有明病院 消化器外科, 医長 (70362499)
Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥16,640,000 (Direct Cost: ¥12,800,000、Indirect Cost: ¥3,840,000)
Fiscal Year 2018: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Fiscal Year 2017: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Fiscal Year 2016: ¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Keywordsリン酸化プロテオーム解析 / 薬剤耐性機序 / 大腸がん / 肺がん / プロテオミクス解析
Outline of Final Research Achievements

In this study, we aimed at development of a novel method using phosphoproteomic and bioinformatics to identify therapeutic target kinases which are most suitable for each patient and also overcome drug resistance. Patient derived cell lines (PDCs) were obtained from Cetuximab sensitive/resistant colorectal cancer patients and Osimertinib sensitive/resistant lung cancer patients. These PDCs were subjected to phosphoproteomic analysis. As a result, several kinases were activated in Cetuximab and Osimertinib resistant PDCs, respectively. These activated kinases are very different from patient to patient and it was suggested that inhibitors to those kinases would be useful for individual patients. This method is considered to be very useful for realizing Precision Medicine.

Academic Significance and Societal Importance of the Research Achievements

本研究の学術的意義は、まず、大規模リン酸化プロテオミクスとインフォマティクスを用いた網羅的キナーゼ活性定量法を確立したことである。また、この手法を用いることで、薬剤抵抗性の機序を解明したことおよび患者の分子生物学的多様性を明らかにしたことである。本研究の社会的意義は、がん治療はがん種別の画一的治療法ではなく、個々の患者に最適な治療法が必要であることを再認識できたこと、および新規治療標的となるキナーゼを同定できたことである。我々が開発した手法は、大腸がんや肺がんにとどまらず、あらゆる疾患に応用でき、真の個別化医療の実現のための有用なツールとなると思われる。

Report

(4 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (35 results)

All 2019 2018 2017 2016 Other

All Journal Article (6 results) (of which Peer Reviewed: 6 results,  Open Access: 4 results,  Acknowledgement Compliant: 1 results) Presentation (25 results) (of which Int'l Joint Research: 6 results,  Invited: 11 results) Remarks (2 results) Patent(Industrial Property Rights) (2 results) (of which Overseas: 1 results)

  • [Journal Article] Improved phosphoproteomic analysis for phosphosignaling and active-kinome profiling in Matrigel-embedded spheroids and patient-derived organoids2018

    • Author(s)
      Abe Yuichi、Tada Asa、Isoyama Junko、Nagayama Satoshi、Yao Ryoji、Adachi Jun、Tomonaga Takeshi
    • Journal Title

      Scientific Reports

      Volume: 8 Issue: 1 Pages: 11401-11401

    • DOI

      10.1038/s41598-018-29837-1

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cell-free synthesis of stable isotope-labeled internal standards for targeted quantitative proteomics2018

    • Author(s)
      Narumi Ryohei、Masuda Keiko、Tomonaga Takeshi、Adachi Jun、Ueda Hiroki R.、Shimizu Yoshihiro
    • Journal Title

      Synthetic and Systems Biotechnology

      Volume: 3 Issue: 2 Pages: 97-104

    • DOI

      10.1016/j.synbio.2018.02.004

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Deep Phospho- and Phosphotyrosine Proteomics Identified Active Kinases and Phosphorylation Networks in Colorectal Cancer Cell Lines Resistant to Cetuximab2017

    • Author(s)
      Abe Yuichi、Nagano Maiko、Kuga Takahisa、Tada Asa、Isoyama Junko、Adachi Jun、Tomonaga Takeshi
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 10463-10463

    • DOI

      10.1038/s41598-017-10478-9

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] TKI-addicted ROS1-rearranged cells are destined to survival or death by the intensity of ROS1 kinase activity2017

    • Author(s)
      Hayato Ogura, Yuka Nagatake-Kobayashi, Jun Adachi, Takeshi Tomonaga, Naoya Fujita, Ryohei Katayama
    • Journal Title

      Sci. Rep.

      Volume: 7 Issue: 1 Pages: 5519-5519

    • DOI

      10.1038/s41598-017-05736-9

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Deep Phosphotyrosine Proteomics by Optimization of Phosphotyrosine Enrichment and MS/MS Parameters.2017

    • Author(s)
      Abe Y., Nagano M., Tada A., Adachi J., and Tomonaga T.
    • Journal Title

      J.Proteome Res.

      Volume: 16 Issue: 2 Pages: 1077-1086

    • DOI

      10.1021/acs.jproteome.6b00576

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Improved Proteome and Phosphoproteome Analysis on a Cation Exchanger by a Combined Acid and Salt Gradient.2016

    • Author(s)
      Adachi, J., Hashiguchi, K., Nagano, M., Sato, M., Sato, A., Fukamizu, K., Ishihama, Y., Tomonaga, T
    • Journal Title

      Anal Chem

      Volume: 88 Issue: 16 Pages: 7899-7903

    • DOI

      10.1021/acs.analchem.6b01232

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Presentation] 最先端プロテオミクスを活用した未来医療戦略2019

    • Author(s)
      朝長 毅
    • Organizer
      創薬サイエンス部門シンポジウム~未来医療を推進する革新的技術のフロンティア~
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Discovery of novel drug targets using state-of-the-art proteomics technology and its application to personalized medicine2019

    • Author(s)
      朝長 毅
    • Organizer
      未来創薬医療イノベーションシンポジウム
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Improvement of comprehensive phosphotysorine proteomics.2018

    • Author(s)
      Y. Abe, A. Tada, J. Isoyama, M. Nagano, T. Kuga. A. Sato. J. Adachi. T. Tomonaga
    • Organizer
      Mass Spectrometry and Proteomics 2018 (MSP2018)
    • Related Report
      2018 Annual Research Report
  • [Presentation] Comprehensive phosphoproteomics from biopsy specimens.2018

    • Author(s)
      Y. Abe, H. Syoji, H. Hirano, J. Adachi,T Tomonaga.
    • Organizer
      Mass Spectrometry and Proteomics 2018 (MSP2018)
    • Related Report
      2018 Annual Research Report
  • [Presentation] Development of Fe3+-IMAC phosphopeptide enrichment for high throughput large scale phosphoproteomics.2018

    • Author(s)
      R. Narumi, J. Adachi, T. Tomonaga,
    • Organizer
      Mass Spectrometry and Proteomics 2018 (MSP2018)
    • Related Report
      2018 Annual Research Report
  • [Presentation] Phosphoproteomics of non-small-cell lung cancer cells treated with erlotinib reveals drug-resistant signatures and potential targets.2018

    • Author(s)
      J. Adachi, U. Abe, M. Nagano, A. Sato, M. Kishida, T. Tomonaga
    • Organizer
      Mass Spectrometry and Proteomics 2018 (MSP2018)
    • Related Report
      2018 Annual Research Report
  • [Presentation] Improvement of proteomic analysis targeting multiple post-translational modifications using immunoprecipitation with pan-PTM antibodies.2018

    • Author(s)
      Y. Abe, A. Tada, J. Isoyama, T. Tomonaga, J. Adachi
    • Organizer
      THE 22nd INTERNATIONAL MASS SPECTROMETRY CONFERENCE (IMSC) 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Phosphoproteomics of non-small-cell lung cancer cells treated with erlotinib reveals drug-resistant signatures and potential targets.2018

    • Author(s)
      J. Adachi, Y. Abe, M. Nagano, J. Isoyama, M. Kishida, T. Tomonaga
    • Organizer
      THE 22nd INTERNATIONAL MASS SPECTROMETRY CONFERENCE (IMSC) 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Pharmacoproteoomic analysis targeting multiple post-translational modifications for systems biology in drug censitivity.2018

    • Author(s)
      Y Abe, T Tomonaga, J Adachi
    • Organizer
      第77回日本癌学会学術総会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 最先端プロテオミクス技術を用いた新規創薬標的因子の探索と個別化医療への応用.2018

    • Author(s)
      朝長 毅
    • Organizer
      第63回公益社団法人日本口腔外科学会総会・学術大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 薬剤感受性システム生物学を切り開くマルチ翻訳後修飾の薬理プロテオーム解析2018

    • Author(s)
      阿部雄一、朝長 毅、足立 淳
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 大腸がんの早期診断・再発診断バイオマーカーの探索2017

    • Author(s)
      朝長 毅
    • Organizer
      日本臨床検査医学会・日本臨床化学会 第13回合同地方会
    • Place of Presentation
      岡山
    • Year and Date
      2017-02-12
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 先端プロテオーム解析技術を用いた新規創薬標的因子の探索2017

    • Author(s)
      朝長 毅
    • Organizer
      彩都産学官連携フォーラム2017
    • Place of Presentation
      大阪
    • Year and Date
      2017-01-25
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] リン酸化プロテオーム解析を用いた肺がん細胞株の薬剤応答解析2017

    • Author(s)
      足立 淳
    • Organizer
      第65回質量分析総合討論会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Phosphoproteomics of non-small-cell lung cancer cells treated with erlotinib reveals drug-resistant signatures.2017

    • Author(s)
      Jun Adachi, Yuichi Abe, Maiko Nagano, Marina Kishida, Ayako Sato, Junko Isoyama, Takeshi Tomonaga
    • Organizer
      65TH ASMS Conference on Mass Spectrometry and Allied Topics
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Phosphoproteomics of non-small-cells lung cancer cells treated with erlotinib reveals drug-resistant signatures and potential targets.2017

    • Author(s)
      Jun Adachi, Yuichi Abe, Maiko Nagano, Marina Kishida, Ayako Sato, Junko Isoyama, Takeshi Tomonaga
    • Organizer
      日本プロテオーム学会2017年大会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] リン酸化プロテオゲノミクスにより暴かれる淡明腎細胞がんKinotypeと層別化治療戦略の構築.2017

    • Author(s)
      阿部雄一、松井佑介、植村元秀、多田亜沙、足立 淳、朝長 毅
    • Organizer
      日本プロテオーム学会2017年大会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Phosphoproteomics of non-small-cell lung cancer cells treated with erlotinib reveals drug-resistant signatures.2017

    • Author(s)
      Jun Adachi, Yuichi Abe, Maiko Nagano, Marina Kishida, Ayako Sato, Junko Isoyama, Takeshi Tomonaga
    • Organizer
      16th Human Proteome Organization World Congress
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Deep Phospho- and Phosphotyrosine Proteomics Identified Active Kinases and Phosphorylation Networks in Colorectal Cancer Cell Lines Resistant to Cetuximab.2017

    • Author(s)
      Yuichi Abe, Maiko Nagano, Asa Tada, Jun Adachi, Takeshi Tomonaga
    • Organizer
      16th Human Proteome Organization World Congress
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Phosphoproteomics of non-small-cell lung cancer cells reveals drug-resistant signatures and potential targets.2017

    • Author(s)
      足立 淳、朝長 毅
    • Organizer
      第76回日本癌学会学術総会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Optimized phosphoprotemic analysis method for Spheroids and Patient-Derived Organoids embedded in Matrigel.2017

    • Author(s)
      阿部雄一、足立 淳、朝長 毅
    • Organizer
      第76回日本癌学会学術総会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 臨床検体を用いた創薬標的探索のためのプロテオーム・リン酸化プロテオーム解析~分離と選択の融合~2017

    • Author(s)
      朝長 毅
    • Organizer
      生命科学系学会合同年次大会(ConBio2017)
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 質量分析計を用いたクリニカルプロテオミクスの可能性を探る2016

    • Author(s)
      朝長 毅
    • Organizer
      第36回日本分子腫瘍マーカー研究会
    • Place of Presentation
      横浜
    • Year and Date
      2016-10-05
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 質量分析計を用いたクリニカルプロテオミクスの可能性を探る2016

    • Author(s)
      朝長 毅
    • Organizer
      質量分析により変貌する臨床検査の最前線2016
    • Place of Presentation
      東京
    • Year and Date
      2016-09-12
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 定量プロテオミクスを用いたバイオマーカー探索2016

    • Author(s)
      朝長 毅、白水 崇、足立 淳
    • Organizer
      第 29 回バイオメディカル分析科学シンポジウム
    • Place of Presentation
      京都
    • Year and Date
      2016-09-02
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Remarks] 国立研究開発法人 医薬基盤・健康・栄養研究所プロテオームリサーチプロジェクト

    • URL

      http://www.nibiohn.go.jp/proteome/

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
  • [Remarks] http://www.nibiohn.go.jp/proteome/

    • Related Report
      2016 Annual Research Report
  • [Patent(Industrial Property Rights)] 治療標的である活性化キナーゼのスクリーニング方法2019

    • Inventor(s)
      朝長 毅、阿部雄一
    • Industrial Property Rights Holder
      朝長 毅、阿部雄一
    • Industrial Property Rights Type
      特許
    • Filing Date
      2019
    • Related Report
      2018 Annual Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] 薬物耐性細胞における活性化キナーゼのスクリーニング方法2018

    • Inventor(s)
      朝長 毅、阿部 雄一
    • Industrial Property Rights Holder
      国立研究開発法人 医薬基盤・健康・栄養研究所
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2018-037894
    • Filing Date
      2018
    • Related Report
      2017 Annual Research Report

URL: 

Published: 2016-04-21   Modified: 2020-03-30  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi