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Heterochromatin dynamics revealed by single nucleosome imaging

Research Project

Project/Area Number 16H04746
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionNational Institute of Genetics

Principal Investigator

Maeshima Kazuhiro  国立遺伝学研究所, 遺伝メカニズム研究系, 教授 (00392118)

Project Period (FY) 2016-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥17,550,000 (Direct Cost: ¥13,500,000、Indirect Cost: ¥4,050,000)
Fiscal Year 2018: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2017: ¥6,760,000 (Direct Cost: ¥5,200,000、Indirect Cost: ¥1,560,000)
Fiscal Year 2016: ¥7,410,000 (Direct Cost: ¥5,700,000、Indirect Cost: ¥1,710,000)
Keywordsクロマチン動態 / 染色体 / ヌクレオソーム / 1分子イメージング
Outline of Final Research Achievements

How is two meters of genome DNA three-dimensionally organized in the cell as chromatin? For this ten years, we have revealed that chromatin has a dynamic and highly variable configuration like a fluid, rather than a static regular structure like a crystal. If chromatin is fluid-like, what is the organization of heterochromatin, which is assumed to be more condensed, silenced and inactive? We hypothesized that local chromatin dynamics are suppressed in heterochromatin regions, causing a limited access to the regions. We investigated the nucleosome motion in heterochromatin by single nucleosome imaging and fluorescent nucleotide labeling, and proved our hypothesis. We suggested that heterochromatin, whose nucleosomes are crosslinked by some specific chromatin proteins, has lower local mobility and causes lower accessibility of the genome regions, contributing to their silencing.

Academic Significance and Societal Importance of the Research Achievements

個々のヌクレオソームの動きは、クロマチンへのアクセシビリティの制御とも直結し、遺伝子発現調節、DNA 複製、染色体構築のような関連領域に大きなインパクトを与える。その学術的意義は大きい。また、ヒトゲノム情報は私たちの健康や生命に深く関わっている。本研究課題の成果は、「私たちの生命に関わる細胞内のゲノム情報がどのように整理され、アクセスされ、読み出されるのか?」という疑問の解決に直結するものであり、その社会的意義は大きい。

Report

(4 results)
  • 2019 Final Research Report ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (41 results)

All 2018 2017 2016

All Journal Article (18 results) (of which Int'l Joint Research: 9 results,  Peer Reviewed: 14 results,  Open Access: 15 results,  Acknowledgement Compliant: 3 results) Presentation (20 results) (of which Int'l Joint Research: 9 results,  Invited: 14 results) Book (3 results)

  • [Journal Article] Chromatin as a nuclear spring2018

    • Author(s)
      Maeshima, K., Tamura, S., Shimamoto, Y.
    • Journal Title

      Biophysics and Physicobiology

      Volume: 15 Issue: 0 Pages: 189-195

    • DOI

      10.2142/biophysico.15.0_189

    • NAID

      130007475079

    • ISSN
      2189-4779
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Condensins under the microscope.2018

    • Author(s)
      Maeshima, K., Hibino, K., Hudson, D.F.
    • Journal Title

      Journal of Cell Biology

      Volume: 217 Issue: 7 Pages: 2229-2231

    • DOI

      10.1083/jcb.201804078

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] クロマチンダイナミクス~クロマチンの物理的特性とその生物学的意味~2018

    • Author(s)
      井手 聖、永島崚甫、前島一博
    • Journal Title

      実験医学増刊「染色体の新常識」

      Volume: 36(17) Pages: 80-86

    • Related Report
      2018 Annual Research Report
  • [Journal Article] The 10-nm Chromatin Fiber and its Relationship to Interphase Chromosome Organization.2018

    • Author(s)
      Hansen, J.C., Connolly, M., McDonald, C.J., Pan, A., Pryamkova, A., Ray, K., Seidel, E., Tamura, S., Rogge, R., Maeshima, K.
    • Journal Title

      Biochemical Society Transactions

      Volume: 46 Issue: 1 Pages: 67-76

    • DOI

      10.1042/bst20170101

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] DNA Works as a Spring in the Cell!2018

    • Author(s)
      島本勇太、田村佐知子、前島一博
    • Journal Title

      Seibutsu Butsuri

      Volume: 58 Issue: 1 Pages: 024-026

    • DOI

      10.2142/biophys.58.024

    • NAID

      130006322052

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2017 Annual Research Report
    • Open Access
  • [Journal Article] A Transient Rise in Free Mg 2+ Ions Released from ATP-Mg Hydrolysis Contributes to Mitotic Chromosome Condensation2018

    • Author(s)
      Maeshima Kazuhiro、Matsuda Tomoki、Shindo Yutaka、Imamura Hiromi、Tamura Sachiko、Imai Ryosuke、Kawakami Syoji、Nagashima Ryosuke、Soga Tomoyoshi、Noji Hiroyuki、Oka Kotaro、Nagai Takeharu
    • Journal Title

      Current Biology

      Volume: 28 Issue: 3 Pages: 444-451

    • DOI

      10.1016/j.cub.2017.12.035

    • NAID

      120006380520

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Density imaging of heterochromatin in live cells using orientation-independent-DIC microscopy.2017

    • Author(s)
      Imai, R., Nozaki, T., Tani, T., Kaizu, K., Hibino, K., Ide, S., Tamura, S., Takahashi, K., Shribak, M., and Maeshima, K.
    • Journal Title

      Molecular Biology of the Cell.

      Volume: 28 Issue: 23 Pages: 3349-3359

    • DOI

      10.1091/mbc.e17-06-0359

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Dynamic organization of chromatin domains revealed by super-resolution live-cell imaging.2017

    • Author(s)
      Nozaki, T., Imai, R., Tanbo, M., Nagashima, R., Tamura, S., Tani, T., Joti, Y., Tomita, M., Hibino, K., Wendt, K.S., Okada, Y., Nagai, T., Maeshima, K.
    • Journal Title

      Molecular Cell.

      Volume: 67 Issue: 2 Pages: 282-293

    • DOI

      10.1016/j.molcel.2017.06.018

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Nucleosome-nucleosome interactions via histone tails and linker DNA regulate nuclear rigidity2017

    • Author(s)
      Shimamoto Y, Tamura S, Masumoto H, Maeshima K
    • Journal Title

      Molecular Biology of the Cell

      Volume: in press Issue: 11 Pages: 1580-1589

    • DOI

      10.1091/mbc.e16-11-0783

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] 少数支配を実現するゲノム―驚異のDNA収納術―2017

    • Author(s)
      日比野佳代、前島一博
    • Journal Title

      実験医学

      Volume: 35 Pages: 3211-3217

    • Related Report
      2017 Annual Research Report
  • [Journal Article] 生細胞の超解像イメージングにより明らかにされたクロマチンドメインのダイナミックな構造2017

    • Author(s)
      野崎慎・前島一博
    • Journal Title

      First Author's

      Volume: 2017 Pages: 075

    • DOI

      10.7875/first.author.2017.075

    • Related Report
      2017 Annual Research Report
    • Open Access
  • [Journal Article] Bridging the dynamics and organization of chromatin domains by mathematical modeling2017

    • Author(s)
      Shinkai S, Nozaki T, Maeshima K, Togashi Y
    • Journal Title

      Nucleus

      Volume: 印刷中 Issue: 4 Pages: 353-359

    • DOI

      10.1080/19491034.2017.1313937

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Targeting 24 bp within Telomere Repeat Sequences with Tandem Tetramer Pyrrole-Imidazole Polyamide Probes.2016

    • Author(s)
      Kawamoto, Y.,Sasaki, A., Chandrana, A., Hashiya, K., Ide, S., Bando, T., Maeshima, K., Sugiyama, H.
    • Journal Title

      Journal of the American Chemical Society

      Volume: 138 Issue: 42 Pages: 14100-14107

    • DOI

      10.1021/jacs.6b09023

    • NAID

      120006462489

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Budding yeast chromatin is dispersed in a crowded nucleoplasm.2016

    • Author(s)
      Chen, C., Hwa Lim, H., Shi, J., Tamura, S., Maeshima, K., Surana, U., and Gan, L.
    • Journal Title

      Molecular Biology of the Cell.

      Volume: 27 Issue: 21 Pages: 3357-3368

    • DOI

      10.1091/mbc.e16-07-0506

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Dynamic Nucleosome Movement Provides Structural Information of Topological Chromatin Domains in Living Human Cells2016

    • Author(s)
      Shinkai S, Nozaki T, Maeshima K, Togashi Y
    • Journal Title

      PLoS Comput Biol

      Volume: 12 Issue: 10 Pages: e1005136-e1005136

    • DOI

      10.1371/journal.pcbi.1005136

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Telomere Visualization in Tissue Sections Using Pyrrole-Imidazole Polyamide Probes.2016

    • Author(s)
      Sasaki, A., Ide, S., Kawamoto, Y., Bando, T., Murata, Y., Shimura, M., Yamada, K., Hirata, A., Nokihara, K., Hirata, T., Sugiyama, H., Maeshima, K.
    • Journal Title

      Scientific Reports

      Volume: 6 Issue: 1 Pages: 29261-29261

    • DOI

      10.1038/srep29261

    • NAID

      120005774690

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Nucleosomal arrays self-assemble into supramolecular globular structures lacking 30-nm fibers.2016

    • Author(s)
      Kazuhiro Maeshima, Ryan Rogge, Sachiko Tamura, Yasumasa Joti, Takaaki Hikima, Heather Szerlong, Christine Krause, Jake Herman, Jennifer DeLuca, Tetsuya Ishikawa, Jeffrey C. Hansen
    • Journal Title

      EMBO J.

      Volume: in press Issue: 10 Pages: 1115-1132

    • DOI

      10.15252/embj.201592660

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Chromatin folding and DNA replication inhibition mediated by a highly antitumor-active tetrazolato-bridged dinuclear platinum(II) complex.2016

    • Author(s)
      Imai R, Komeda S, Shimura M, Tamura S, Matsuyama S, Nishimura K, Rogge R, Matsunaga A, Hiratani I, Takata H, Uemura M, Iida Y, Yoshikawa Y, Hansen JC, Yamauchi K, Kanemaki MT, Maeshima K.
    • Journal Title

      Scientific Reports

      Volume: 6 Issue: 1 Pages: 24712-24725

    • DOI

      10.1038/srep24712

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] 超解像イメージングによって明らかになった生細胞のクロマチン構造 とそのダイナミクス2018

    • Author(s)
      前島一博
    • Organizer
      第5回北陸エピジェネティクス研究会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Correlation analysis of single nucleosome dynamics reveals compact chromatin domain organization in living cells2018

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      第41回分子生物学会ワークショップ2AW-08 液体相分離による細胞構造アーキテクチュア
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 細胞の中のクロマチンの動きを見る2018

    • Author(s)
      前島一博
    • Organizer
      第41回分子生物学会フォーラム 認定特定非営利活動法人 綜合画像研究支援
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Correlation analysis of single nucleosome dynamics reveals compact chromatin domain organization in living cells2018

    • Author(s)
      Kazuhiro Maeshima alysis
    • Organizer
      3R & 3C Meeting 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 超解像イメージングによって明らかになった生細胞におけるクロマチンの構造とそのダイナミクス2018

    • Author(s)
      前島一博
    • Organizer
      第91回日本生化学会大会シンポジウム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Correlation analysis of single nucleosome dynamics reveals compact chromatin domain organization in living cells2018

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      Colorado Chromatin Meeting 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Correlation analysis of single nucleosome dynamics reveals compact chromatin domain organization in living cells2018

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      2018 Telluride workshop Chromatin Structure and Dynamics
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] クライオ電子顕微鏡、X線散乱、超解像蛍光顕微鏡で明らかになったクロマチンの 構造とダイナミクス2018

    • Author(s)
      前島一博
    • Organizer
      量子生命科学研究会 第2回学術集会・基調講演
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Correlation analysis of single nucleosome dynamics reveals compact chromatin domain organization in living cells2018

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      Cold Spring Harbor Meeting “Nuclear Organization & Function
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 生細胞のクロマチンドメインのダイナミックな構造2018

    • Author(s)
      前島一博
    • Organizer
      第6回 バイオシグナル研究会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 生細胞のクロマチンドメインのダイナミックな構造2017

    • Author(s)
      前島一博
    • Organizer
      第35回 染色体ワークショップ・ 第16回 核ダイナミクス研究会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 長い少数分子であるゲノムDNAは細胞内でどのように収納され、どのように振る舞うのか?2017

    • Author(s)
      前島一博
    • Organizer
      ConBio2017シンポ「少数性の生命科学:Minor 要素の振舞いがシステム全体に影響を及ぼす思わぬ仕掛け」
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Dynamic organization of chromatin domains revealed by super-resolution live-cell imaging2017

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      The 55th Annual Meeting of the biophysical Society of Japan
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] sCMOSカメラとW-Viewによって 明らかになった生細胞の核内環境2017

    • Author(s)
      前島一博
    • Organizer
      第55回 日本生物物理学会年会 浜松ホトニクス株式会社 ランチョンセミナー
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Dynamic chromatin domains revealed by super-resolution live cell imaging2017

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      Gordon Research Conference: Genome Architecture in Cell Fate & Disease
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 1分子イメージングを用いたリンカーヒストンH1 ダイナミクスの解析2017

    • Author(s)
      前島一博
    • Organizer
      日本細胞生物学会「T9 染色体・核・遺伝子発現」
    • Related Report
      2017 Annual Research Report
  • [Presentation] Dynamic chromatin domains revealed by super-resolution live cell imaging2017

    • Author(s)
      前島一博
    • Organizer
      日本細胞生物学会シンポジウム「先端イメージングが解き明かす新しい細胞像」
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Dynamic organization of chromatin domains revealed by super-resolution live-cell imaging2016

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      MBSJ2016シンポジウム
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Dynamic organization of chromatin domains revealed by super-resolution live-cell imaging2016

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      14th Workshop on the molecular and physical biology of chromosomes
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Dynamic organization of chromatin domains revealed by super-resolution live-cell imaging2016

    • Author(s)
      Kazuhiro Maeshima
    • Organizer
      Cold Spring Harbor Meeting “Nuclear Organization & Function
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Book] Nuclear Architecture and Dynamics2018

    • Author(s)
      Nozaki, T., Hudson, F. D., Tamura, S., Maeshima, K.
    • Total Pages
      22
    • Publisher
      Academic Press
    • ISBN
      9780128034804
    • Related Report
      2017 Annual Research Report
  • [Book] Epigenetics and Systems Biology2017

    • Author(s)
      Hibino, K., Kaizu, K., Takahashi, K., Maeshima, K.
    • Total Pages
      14
    • Publisher
      Academic Press
    • ISBN
      9780128030752
    • Related Report
      2017 Annual Research Report
  • [Book] 少数性生物学2017

    • Author(s)
      前島一博
    • Total Pages
      8
    • Publisher
      日本評論社
    • ISBN
      9784535788169
    • Related Report
      2016 Annual Research Report

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Published: 2016-04-21   Modified: 2021-02-19  

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