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Structural and functional analysis of CRISPR-Cas effector complex

Research Project

Project/Area Number 16H04759
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionKyushu University (2019-2020)
National Institute of Advanced Industrial Science and Technology (2016-2018)

Principal Investigator

Numata Tomoyuki  九州大学, 農学研究院, 准教授 (10401564)

Project Period (FY) 2016-04-01 – 2020-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥17,290,000 (Direct Cost: ¥13,300,000、Indirect Cost: ¥3,990,000)
Fiscal Year 2019: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2018: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2017: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2016: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
KeywordsCRISPR-Cas / crRNA / Casタンパク質 / エフェクター複合体 / 原核生物獲得免疫 / ゲノム / 核酸 / 立体構造解析 / III型CRISPR-Cas / Cmr複合体 / RNA-タンパク質複合体 / 遺伝子サイレンシング / 結晶構造解析 / Csm複合体 / CRISPR-Cas系 / 生体分子 / タンパク質-RNA複合体
Outline of Final Research Achievements

CRISPR-Cas system serves as a prokaryotic adaptive immune system. In this study, I determined the crystal structures of Csm2 and Csm3, the Cas proteins that constitute the type III-A CRISPR-Cas effector complex. I constructed the model structure of the whole effector complex of the type III-A, and revealed the function of the Csm2 protein in the complex. Further, this study suggested the important role of Cmr1, one of the protein subunits of the type III-B CRISPR-Cas effector complex, in the 3’ terminal processing of the pre-crRNA of the type III effectors. To elucidate the structural and functional roles of Cmr1 in the 3’ terminal processing of the pre-crRNA, cryoEM analysis of the type III-B CRISPR-Cas effector complexes are currently in progress.

Academic Significance and Societal Importance of the Research Achievements

CRISPR-Cas系には多様なタンパク質とRNA分子が関与する。現在、ゲノム編集で利用されているのはクラス2のCas9とCas12である。一方、それ以外の因子は現在のところゲノム編集をはじめあまり活用されていない。さらに、機能が分かっていないCRISPR関連タンパク質も多数存在する。したがって、CRISPR-Cas系に関してさらに理解を深めることは、新規なゲノム編集技術の開発や新たな遺伝子発現調節技術の創出などに応用できる可能性を秘めている。本研究は、III型のエフェクター複合体に焦点を当てたものであり、新たな技術に結びつくことが期待できる研究成果である。

Report

(5 results)
  • 2020 Final Research Report ( PDF )
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (7 results)

All 2019 2018 2017 2016

All Journal Article (7 results) (of which Peer Reviewed: 6 results,  Open Access: 2 results)

  • [Journal Article] Crystal Structures of Csm2 and Csm3 in the Type III-A CRISPR-Cas Effector Complex2019

    • Author(s)
      Takeshita, D., Sato, M., Inanaga, H. and Numata, T.
    • Journal Title

      J. Mol. Biol.

      Volume: 431 Issue: 4 Pages: 748-763

    • DOI

      10.1016/j.jmb.2019.01.009

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure and enzymatic properties of a two-domain family GH19 chitinase from Japanese cedar (Cryptomeria japonica) pollen2018

    • Author(s)
      Takashima, T., Numata, T., Taira, T., Fukamizo, T. and Ohnuma, T.
    • Journal Title

      J. Agric. Food Chem.

      Volume: 66 Issue: 22 Pages: 5699-5706

    • DOI

      10.1021/acs.jafc.8b01140

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Metabolic and chemical regulation of tRNA modification associated with taurine deficiency and human disease2018

    • Author(s)
      Asano Kana、Suzuki Takeo、Saito Ayaka、Wei Fan-Yan、Ikeuchi Yoshiho、Numata Tomoyuki、Tanaka Ryou、Yamane Yoshihisa、Yamamoto Takeshi、Goto Takanobu、Kishita Yoshihito、Murayama Kei、Ohtake Akira、Okazaki Yasushi、Tomizawa Kazuhito、Sakaguchi Yuriko、Suzuki Tsutomu
    • Journal Title

      Nucleic Acids Res.

      Volume: 46 Issue: 4 Pages: 1565-1583

    • DOI

      10.1093/nar/gky068

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Crystal structure and thermodynamic dissection of chitin oligosaccharide binding to the LysM module of chitinase-A from Pteris ryukyuensis2017

    • Author(s)
      Ohnuma, T., Taira, T., Umemoto, N., Kitaoku, Y., Sørlie, M., Numata, T. and Fukamizo, T.
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 494 Issue: 3-4 Pages: 736-741

    • DOI

      10.1016/j.bbrc.2017.08.143

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Chitin oligosaccharide binding to the lysin motif of a novel type of chitinase from the multicellular green alga, Volvox carteri2017

    • Author(s)
      Kitaoku, Y., Fukamizo, T., Numata, T. and Ohnuma, T.
    • Journal Title

      Plant Mol. Biol.

      Volume: 93 Issue: 1-2 Pages: 97-108

    • DOI

      10.1007/s11103-016-0549-5

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase2016

    • Author(s)
      Shinya, S., Nishimura, S., Kitaoku, Y., Numata, T., Kimoto, H., Kusaoke, H., Ohnuma, T. and Fukamizo, T.
    • Journal Title

      Biochem J.

      Volume: 473 Issue: 8 Pages: 1085-1095

    • DOI

      10.1042/bcj20160045

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal Structure of the CRISPR-Cas RNA Silencing Complex2016

    • Author(s)
      Numata, T. and Osawa, T.
    • Journal Title

      Photon Factory Highlights 2015

      Volume: - Pages: 42-43

    • Related Report
      2016 Annual Research Report
    • Open Access

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Published: 2016-04-21   Modified: 2022-01-27  

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