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Large scale iterative solvers by combining FMM and H-matrices

Research Project

Project/Area Number 16H05859
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field High performance computing
Research InstitutionTokyo Institute of Technology

Principal Investigator

Yokota Rio  東京工業大学, 学術国際情報センター, 准教授 (20760573)

Research Collaborator Li Xiaoye S.  Lawrence Berkeley National Laboratory
Keyes David E.  King Abdullah University of Science and Technology
Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥6,630,000 (Direct Cost: ¥5,100,000、Indirect Cost: ¥1,530,000)
Fiscal Year 2017: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Fiscal Year 2016: ¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
KeywordsH行列 / FMM / GPU / LU分解 / ハイパフォーマンス・コンピューティング / アルゴリズム / 数値解法 / 反復法 / 前処理
Outline of Final Research Achievements

In FY2016, we extended the FMM to H-matrices and developed a LU decomposition code using H-matrices. The dual tree traversal of exaFMM was used to determine the block cluster tree for arbitrary admissibility conditions, which allowed tasked based parallelization of the compression part of the H-matrix code. In FY2017, we further optimized inner kernels of the H-matrix code and compared H-matrices with multigrid for real applications. The use of batched MAGMA enabled us to maximize the performance of GPUs even for small matrices. The advantage of H-matrices over multigrid depends on the condition number of the matrix, while the H-matrix becomes advantageous as the degree of parallelism increases.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • Research Products

    (28 results)

All 2018 2017 2016 Other

All Int'l Joint Research (4 results) Journal Article (6 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 6 results,  Open Access: 1 results,  Acknowledgement Compliant: 2 results) Presentation (17 results) (of which Int'l Joint Research: 12 results,  Invited: 3 results) Remarks (1 results)

  • [Int'l Joint Research] KAUST(サウジアラビア)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Lawrence Berkeley National Laboratory/University of Tennessee(米国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Abdullah国王科学技術大学(サウジアラビア)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Lawrence Berkeley国立研究所/George Washington大学(米国)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Fast multipole preconditioners for sparse matrices arising from elliptic equations2017

    • Author(s)
      Ibeid Huda、Yokota Rio、Pestana Jennifer、Keyes David
    • Journal Title

      Computing and Visualization in Science

      Volume: 18 Issue: 6 Pages: 213-229

    • DOI

      10.1007/s00791-017-0287-5

    • NAID

      120006582641

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Fast Multipole Preconditioners for Sparse Matrices Arising from Elliptic Equations2017

    • Author(s)
      H. Ibeid, R. Yokota, J. Pestana, D. Keyes
    • Journal Title

      Computing and Visualization in Science

      Volume: 印刷中

    • NAID

      120006582641

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] FMM と H^2(HSS) 行列のトレードオフについて2016

    • Author(s)
      横田理央
    • Journal Title

      計算工学

      Volume: 21 Pages: 3498-3501

    • NAID

      120006582545

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] 大規模境界要素法解析における分散並列FMMの通信最適化2016

    • Author(s)
      横田理央
    • Journal Title

      シミュレーション

      Volume: 35 Pages: 147-153

    • NAID

      120006582538

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Multi-level Restricted Maximum Likelihood Covariance Estimation and Kriging for Large Non-gridded Spatial Datasets2016

    • Author(s)
      J. E. Castrillon-Candas, M. G. Genton, R. Yokota
    • Journal Title

      Spatial Statistics

      Volume: 18 Pages: 105-124

    • DOI

      10.1016/j.spasta.2015.10.006

    • NAID

      120006582459

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A Performance Model for the Communication in Fast Multipole Methods on HPC Platforms2016

    • Author(s)
      H. Ibeid, R. Yokota, D. Keyes
    • Journal Title

      International Journal of High Performance Computing Applications

      Volume: 30 Issue: 4 Pages: 423-437

    • DOI

      10.1177/1094342016634819

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Analyzing Performance of BiCGStab with Hierarchical Matrix on GPU clusters2018

    • Author(s)
      Ichitaro Yamazaki, Ahmad Abdelfattah, Akihiro Ida, Satoshi Ohshima, Stanimire Tomov, Rio Yokota, Jack Dongarra
    • Organizer
      32nd IEEE International Parallel & Distributed Processing Symposium
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Optimization of Hierarchical Matrix Computation on GPU2018

    • Author(s)
      Satoshi Ohshima, Ichitaro Yamazaki, Akihiro Ida, Rio Yokota
    • Organizer
      SC Asia
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 低ランク近似行列によるCNNにおける畳み込み演算の最適化2017

    • Author(s)
      本山 義史,遠藤 敏夫,松岡 聡,横田 理央,福田 圭祐
    • Organizer
      第158回ハイパフォーマンスコンピューティング研究発表会
    • Place of Presentation
      熱海
    • Year and Date
      2017-03-08
    • Related Report
      2016 Annual Research Report
  • [Presentation] 低ランク近似を用いた深層学習の行列積の高速化2017

    • Author(s)
      関谷 翠,大沢 和樹,長沼 大樹,横田 理央
    • Organizer
      第158回ハイパフォーマンスコンピューティング研究発表会
    • Place of Presentation
      熱海
    • Year and Date
      2017-03-08
    • Related Report
      2016 Annual Research Report
  • [Presentation] Compute-Memory Tradeoff in Hierarchical Low-Rank Approximation Methods2017

    • Author(s)
      R. Yokota
    • Organizer
      SIAM Conference on Computational Science and Engineering
    • Place of Presentation
      Atlanta, USA
    • Year and Date
      2017-02-27
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Energy Conservation of Fast Multipole Methods in Classical Molecular Dynamics Simulations2017

    • Author(s)
      R. Yokota
    • Organizer
      7th AICS International Symposium
    • Place of Presentation
      神戸
    • Year and Date
      2017-02-24
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Performance Evaluation of Computation and Communication Kernels of the Fast Multipole Method on Intel Manycore Architecture2017

    • Author(s)
      Mustafa AbdulJabbar, Mohammed Al Farhan, Rio Yokota, David Keyes
    • Organizer
      3rd International European Conference on Parallel and Distributed Computing
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Communication Reducing Algorithms for Distributed Heirarchical N-Body Methods2017

    • Author(s)
      Mustafa AbdulJabbar, George Markomanolis, Huda Ibeid, Rio Yokota, David Keyes
    • Organizer
      32nd International Conference, ISC High Performance
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] GPUクラスタ上における階層型行列計算の最適化2017

    • Author(s)
      大島 聡史, 山崎 市太郎, 伊田 明弘, 横田理央
    • Organizer
      Summer United Workshops on Parallel, Distributed and Cooperative Processing
    • Related Report
      2017 Annual Research Report
  • [Presentation] Hierarchical Low-Rank Approximations at Extreme Scale2017

    • Author(s)
      Rio Yokota
    • Organizer
      32nd International Conference, ISC High Performance
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Compute-Memory Tradeoff in Hierarchical Low-Rank Approximation Methods2017

    • Author(s)
      Rio Yokota
    • Organizer
      SIAM Conference on Computational Science and Engineering
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Energy Conservation of Fast Multipole Methods in Classical Molecular Dynamics Simulations2017

    • Author(s)
      Rio Yokota
    • Organizer
      7th AICS International Symposium
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Tapas: An Implicitly Parallel ProgrammingFramework For Hierarchical N-body Algorithms2016

    • Author(s)
      K. Fukuda, M. Matsuda, N. Maruyama, R. Yokota, K. Taura, S. Matsuoka
    • Organizer
      The 22nd IEEE International Conference on Parallel And Distributed Systems, The 22nd IEEE International Conference on Parallel And Distributed Systems
    • Place of Presentation
      Wuhan, China
    • Year and Date
      2016-12-13
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Improving Data Locality of Fast Multipole Methods2016

    • Author(s)
      R. Yokota
    • Organizer
      Third Workshop on Programming Abstractions for Data Locality
    • Place of Presentation
      神戸
    • Year and Date
      2016-10-24
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Fast Multipole Method を用いた多種アーキテクチャ向け スーパーコンピュータ用ライブラリの開発と 分子・流体シミュレーションでの評価2016

    • Author(s)
      横田理央
    • Organizer
      学際大規模情報基盤共同利用・共同研究拠点 第8回シンポジウム
    • Place of Presentation
      品川
    • Year and Date
      2016-07-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] FMMの性能の可搬性2016

    • Author(s)
      横田理央
    • Organizer
      第21回計算工学講演会
    • Place of Presentation
      新潟
    • Year and Date
      2016-05-31
    • Related Report
      2016 Annual Research Report
  • [Presentation] A Matrix-Free Preconditioner for Elliptic Solvers Based on the Fast Multipole Method2016

    • Author(s)
      H. Ibeid, R. Yokota, D. Keyes
    • Organizer
      SIAM Conference on Parallel Processing for Scientific Computing
    • Place of Presentation
      Paris, France
    • Year and Date
      2016-04-12
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Remarks] 階層的低ランク近似

    • URL

      http://www.rio.gsic.titech.ac.jp/jp/research/index.html

    • Related Report
      2016 Annual Research Report

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Published: 2016-04-21   Modified: 2022-05-23  

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