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Development of two-dimensional DNA origami structure for construction of molecular delivery system

Research Project

Project/Area Number 16K14033
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Bio-related chemistry
Research InstitutionKyoto University

Principal Investigator

Endo Masayuki  京都大学, 理学研究科, 特定准教授 (70335389)

Project Period (FY) 2016-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
KeywordsDNAナノテクノロジー / DNAオリガミ / リポソーム / 脂質膜 / 原子間力顕微鏡 / デリバリーシステム / 細胞機能制御 / DNAナノ構造体 / 人工受容体 / 細胞 / ドラッグデリバリー
Outline of Final Research Achievements

In this study, we aimed to develop new strategy by constructing DNA nanostructures which can penetrate the cell membrane and application to molecular delivery system. We designed and constructed a DNA origami structure having a needle-like portion that can penetrate the lipid membrane, and observed that it interacts with the lipid bilayer membrane and forms a lattice assembly by high-speed AFM. By using liposome which is a model system of the cell, the target molecule was successfully introduced into the liposome and biochemical reaction was initiated by penetrating the lipid membrane. Using this system, we develop a new system that can introduce the target molecule from the cell surface into the cell.

Report

(3 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • Research Products

    (49 results)

All 2018 2017 2016 Other

All Int'l Joint Research (4 results) Journal Article (19 results) (of which Int'l Joint Research: 10 results,  Peer Reviewed: 19 results,  Open Access: 8 results,  Acknowledgement Compliant: 11 results) Presentation (22 results) (of which Int'l Joint Research: 13 results,  Invited: 9 results) Book (2 results) Remarks (2 results)

  • [Int'l Joint Research] Kent State University(米国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Technische Universität München(Germany)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] University of Bordeaux(France)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] University of Leeds(英国)

    • Related Report
      2017 Annual Research Report
  • [Journal Article] DNA Origami Scaffolds as Templates for Functional Tetrameric Kir3 K+ Channels2018

    • Author(s)
      Kurokawa Tatsuki、Kiyonaka Shigeki、Nakata Eiji、Endo Masayuki、Koyama Shohei、Mori Emiko、Tran Nam Ha、Dinh Huyen、Suzuki Yuki、Hidaka Kumi、Kawata Masaaki、Sato Chikara、Sugiyama Hiroshi、Morii Takashi、Mori Yasuo
    • Journal Title

      Angew. Chem. Int. Ed. Engl.

      Volume: 57 Issue: 10 Pages: 2586-2591

    • DOI

      10.1002/anie.201709982

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Direct Single-Molecule Observation of Mode and Geometry of RecA-Mediated Homology Search2018

    • Author(s)
      A. Lee, M. Endo, J. Hobbs, C. Walti
    • Journal Title

      ACS Nano

      Volume: 12 Issue: 1 Pages: 272-278

    • DOI

      10.1021/acsnano.7b06208

    • NAID

      120006491911

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Triggering nucleic acid nanostructure assembly by conditional kissing interactions2018

    • Author(s)
      L. Azema, S. Bonnet-Salomon, M. Endo, Y. Takeuchi, G. Durand, T. Emura, K. Hidaka, E. Dausse, H. Sugiyama, J.-J. Toulme
    • Journal Title

      Nucleic Acids Research

      Volume: 46 Issue: 3 Pages: 1052-1058

    • DOI

      10.1093/nar/gkx1267

    • NAID

      120006466621

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] DNAから作るナノスケールの構造体―そのデザインと作成―2018

    • Author(s)
      遠藤 政幸
    • Journal Title

      化学と教育

      Volume: 66 Pages: 88-91

    • NAID

      130007589697

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Single-Molecule Observation of the Photoregulated Conformational Dynamics of DNA Origami Nanoscissors2017

    • Author(s)
      Willner Elena M.、Kamada Yuu、Suzuki Yuki、Emura Tomoko、Hidaka Kumi、Dietz Hendrik、Sugiyama Hiroshi、Endo Masayuki
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 56 Issue: 48 Pages: 15324-15328

    • DOI

      10.1002/anie.201708722

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Holliday junction resolvases mediate chloroplast nucleoid segregation2017

    • Author(s)
      Kobayashi Y, Misumi O, Odahara M, Ishibashi K, Hirono M, Hidaka K, Endo M, Sugiyama H, Iwasaki H, Kuroiwa T, Shikanai T, Nishimura Y.
    • Journal Title

      Science

      Volume: 356 Issue: 6338 Pages: 631-634

    • DOI

      10.1126/science.aan0038

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Confined Space Facilitates G-quadruplex Formation2017

    • Author(s)
      P. Shrestha, S. Jonchhe, T. Emura, K. Hidaka, M. Endo, H. Sugiyama, H. Mao
    • Journal Title

      Nature Nanotechnology

      Volume: 12 Issue: 6 Pages: 582-588

    • DOI

      10.1038/nnano.2017.29

    • Related Report
      2017 Annual Research Report 2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Protein-driven RNA nanostructured devices that function in vitro and control mammalian cell fate.2017

    • Author(s)
      Tomonori Shibata, Yoshihiko Fujita, Hirohisa Ohno, Yuki Suzuki, Karin Hayashi, Kaoru R. Komatsu, Shunsuke Kawasaki, Kumi Hidaka, Shin Yonehara, Hiroshi Sugiyama, Masayuki Endo and Hirohide Saito
    • Journal Title

      Nature Communications

      Volume: 8 Issue: 1 Pages: 540-540

    • DOI

      10.1038/s41467-017-00459-x

    • NAID

      120006346264

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Photoregulated DNA-Based Rotary System And Direct Observation of Its Rotational Movement2017

    • Author(s)
      Y. Yang, R. Tashiro, Y. Suzuki, T. Emura, K. Hidaka, H. Sugiyama, M. Endo
    • Journal Title

      Chemistry, A European Journal

      Volume: 23 Issue: 16 Pages: 3979-3985

    • DOI

      10.1002/chem.201605616

    • Related Report
      2017 Annual Research Report 2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] High-Resolution Imaging of a Single Gliding Protofilament of Tubulins by HS-AFM2017

    • Author(s)
      Keya Jakia Jannat、Inoue Daisuke、Suzuki Yuki、Kozai Toshiya、Ishikuro Daiki、Kodera Noriyuki、Uchihashi Takayuki、Kabir Arif Md. Rashedul、Endo Masayuki、Sada Kazuki、Kakugo Akira
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 6166-6166

    • DOI

      10.1038/s41598-017-06249-1

    • NAID

      120006368158

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Programmable formation of catalytic RNA triangles and squares by assembling modular RNA enzymes2017

    • Author(s)
      H. Oi, D. Fujita, Y. Suzuki, H. Sugiyama, M. Endo, S. Matsumura, Y. Ikawa
    • Journal Title

      The Journal of Biochemistry

      Volume: - Pages: 451-462

    • DOI

      10.1093/jb/mvw093

    • NAID

      40021219839

    • Related Report
      2017 Annual Research Report 2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Torsional Constraints of DNA Substrates Impact Cas9 Cleavage2016

    • Author(s)
      M. H. Raz, K. Hidaka, S. J. Sturla, H. Sugiyama, M. Endo
    • Journal Title

      Journal of the American Chemical Society

      Volume: 138 Issue: 42 Pages: 13842-13845

    • DOI

      10.1021/jacs.6b08915

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Triple Helix Formation in a Topologically Controlled DNA Nanosystem2016

    • Author(s)
      Y. Yamagata, T. Emura, K. Hidaka, H. Sugiyama, M. Endo
    • Journal Title

      Chemistry, A European Journal

      Volume: 22 Issue: 16 Pages: 5494-5498

    • DOI

      10.1002/chem.201505030

    • NAID

      120006462499

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] A light-driven 3D plasmonic nanosystem that translates molecular motion into reversible chiroptical function2016

    • Author(s)
      A. Kuzyk, Y. Yang, X. Duan, S. Stoll, A. O. Govorov, H. Sugiyama, M. Endo, N. Liu
    • Journal Title

      Nature Communications

      Volume: 7 Issue: 1 Pages: 10591-10591

    • DOI

      10.1038/ncomms10591

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Mechanical Properties of DNA Origami Nanoassemblies are Determined by Holliday Junction Mechanophores2016

    • Author(s)
      P. Shrestha, T. Emura, D. Koirala, K. Hidaka, W. Maximuck, M. Endo, H. Sugiyama, H. Mao
    • Journal Title

      Nucleic Acids Research

      Volume: 44 Issue: 14 Pages: 6574-6582

    • DOI

      10.1093/nar/gkw610

    • NAID

      120005829396

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Examining cooperative binding of Sox2 on DC5 regulatory element upon complex formation with Pax6 through excess electron transfer assay2016

    • Author(s)
      A. Saha, S. Kizaki, D. De, M. Endo, K. K. Kim, H. Sugiyama
    • Journal Title

      Nucleic Acids Research

      Volume: 44 Issue: 14 Pages: e125-e125

    • DOI

      10.1093/nar/gkw478

    • NAID

      120005829395

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Single-molecule observations of RNA-RNA kissing interactions in a DNA nanostructure2016

    • Author(s)
      Y. Takeuchi, M. Endo, Y. Suzuki, K. Hidaka, G. Durand, E. Dausse, J.-J. Toulme, H. Sugiyama
    • Journal Title

      Biomaterials Science

      Volume: 4 Issue: 1 Pages: 130-135

    • DOI

      10.1039/c5bm00274e

    • NAID

      120005980894

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Self-assembling DNA hydrogel-based delivery of immunoinhibitory nucleic acids to immune cells.2016

    • Author(s)
      Nishida Y, Ohtsuki S, Araie Y, Umeki Y, Endo M, Emura T, Hidaka K, Sugiyama H, Takahashi Y, Takakura Y, Nishikawa M.
    • Journal Title

      Nanomedicine: Nanotechnology, Biology and Medicine

      Volume: 12 Issue: 1 Pages: 123-130

    • DOI

      10.1016/j.nano.2015.08.004

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] DNAオリガミの応用 構造から機能へ2016

    • Author(s)
      遠藤 政幸
    • Journal Title

      現代化学

      Volume: 544 Pages: 40-45

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] 自己集合性3次元DNA結晶のAFMによる結晶表面観察2018

    • Author(s)
      浴 晴彦, 杉山 弘, 遠藤 政幸
    • Organizer
      日本化学会第98春季年会(2018)
    • Related Report
      2017 Annual Research Report
  • [Presentation] 狭小空間での分子の振る舞い2018

    • Author(s)
      遠藤 政幸
    • Organizer
      第1回分子ロボティクス年次大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] DNAオリガミを使った1分子の観察2018

    • Author(s)
      遠藤 政幸
    • Organizer
      静岡ライフサイエンスシンポジウム
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] High-speed AFM imaging of synthetic nanomachines and nanostructures2018

    • Author(s)
      Masayuki Endo
    • Organizer
      The SPIRITS International Symposium 2018
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Chemically controllable nanosystems constructed in the nanostructures2017

    • Author(s)
      Masayuki Endo
    • Organizer
      日本生物物理学会 第54回年会
    • Place of Presentation
      つくば国際会議場
    • Year and Date
      2017-11-27
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] DNA鎖の拘束によるCas9切断への影響2017

    • Author(s)
      Michael H. Reaz, 日高 久美, Shana J. Sturla, 杉山 弘, 遠藤 政幸
    • Organizer
      日本化学会第97春季年会(2017)
    • Place of Presentation
      慶応大学日吉キャンパス
    • Year and Date
      2017-03-18
    • Related Report
      2016 Research-status Report
  • [Presentation] コンフォメーション変換により化学反応を誘導するDNAナノ構造体の構築2017

    • Author(s)
      鎌田 佑, 竹内 洋祐, 竹中 友洋, 江村 智子, 杉山 弘, 遠藤 政幸
    • Organizer
      日本化学会第97春季年会(2017)
    • Place of Presentation
      慶応大学日吉キャンパス
    • Year and Date
      2017-03-18
    • Related Report
      2016 Research-status Report
  • [Presentation] Observation of single-molecule behavior in the DNA nanospace2017

    • Author(s)
      Masayuki Endo
    • Organizer
      The 3rd SPIRIT international symposium, Light Opening up Frontier of DNA and Nanocrystal Superstructures
    • Place of Presentation
      Kyoto University
    • Year and Date
      2017-02-02
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] ナノ空間での1分子の振る舞い2017

    • Author(s)
      遠藤 政幸
    • Organizer
      ケミカルバイオロジー Mini-sumposium at KIT
    • Place of Presentation
      京都工芸繊維大学
    • Year and Date
      2017-01-16
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Observation of biophysical property of G-quadruplex in a confined nanospace2017

    • Author(s)
      M. Endo, P. Shrestha, S. Jonchhe, T. Emura, K. Hidaka, H. Sugiyama, H. Mao
    • Organizer
      The 44th International Symposium on Nucleic Acid Chemistry
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Direct observation of photoresponsive DNA nanodevice and its self-assembly2017

    • Author(s)
      Y. Kamada, E. Willner, Y. Suzuki, T. Emura, K. Hidaka, H. Dietz, H. Sugiyama, M. Endo
    • Organizer
      The 44th International Symposium on Nucleic Acid Chemistry
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Biophysical property of G-quadruplex caged in a confined DNA nanospace2017

    • Author(s)
      M. Endo, P. Shrestha, S. Jonchhe, T. Emura, K. Hidaka, H. Sugiyama, H. Mao
    • Organizer
      The 23rd International Meeting on DNA Computing and Molecular Programming
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 制限された空間でのグアニン四重鎖の物性2017

    • Author(s)
      遠藤 政幸, Prakash Shrestha, Sagun Jonchhe, 江村 智子, 日高 久美, 杉山 弘, Hanbin Mao
    • Organizer
      第11回バイオ関連化学シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] High-speed AFM imaging of synthetic nanomachines and nanostructures2017

    • Author(s)
      Masayuki Endo
    • Organizer
      Unconventional Computation and Natural Computation 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 光応答性を持つDNA分子デバイスの構築とその自己集積化2017

    • Author(s)
      鎌田 佑, Elena Willner, 鈴木 勇輝, 江村 智子, 日高 久美, Hendrik Dietz, 杉山 弘, 遠藤 政幸
    • Organizer
      日本ケミカルバイオロジー学会 第12回年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Observation of single biomolecule properties in a DNA nanospace2017

    • Author(s)
      M. Endo, P. Shrestha, S. Jonchhe, T. Emura, K. Hidaka, H. Sugiyama, H. Mao
    • Organizer
      14th Conference on the Foundations of Nanoscience 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] AFM-based single-molecule imaging of biomolecules and synthetic molecules in the DNA origami nanostructures2016

    • Author(s)
      Masayuki Endo
    • Organizer
      Department of Health Sciences and Technology, ETH Zurich
    • Place of Presentation
      Zurich, Switzerland
    • Year and Date
      2016-09-30
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Direct observation of the duplex formation and dissociation in the G-quadruplex-/i-motif-forming site2016

    • Author(s)
      M. Endo, X. Xing, X. Zhou, T. Emura, K. Hidaka, B. Tuesuwan H. Sugiyama
    • Organizer
      The 43rd International Symposium on Nucleic Acid Chemistry
    • Place of Presentation
      Kumamoto University
    • Year and Date
      2016-09-28
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Photoregulated DNA-based rotary nanomachine and direct visualization of the rotational movement2016

    • Author(s)
      Y. Yang, R. Tashiro, Y. Suzuki, T. Emura, K. Hidaka, H. Sugiyama, M. Endo
    • Organizer
      DNA22: The Twentieth International Meeting on DNA Computing and Molecular Programming
    • Place of Presentation
      udwig-Maximilians-University Munchen, Germany
    • Year and Date
      2016-09-04
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Filling cavities of lipid-bilayer-supported two-dimensional DNA origami arrays2016

    • Author(s)
      Y. Suzuki, H. Sugiyama, M. Endo
    • Organizer
      DNA22: The Twentieth International Meeting on DNA Computing and Molecular Programming
    • Place of Presentation
      udwig-Maximilians-University Munchen, Germany
    • Year and Date
      2016-09-04
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] High-speed AFM imaging of biomolecules and synthetic molecules in the DNA origami nanostructures2016

    • Author(s)
      Masayuki Endo
    • Organizer
      Department of Chemistry and Biochemistry, Kent State University
    • Place of Presentation
      Kent, OH, USA
    • Year and Date
      2016-07-07
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Photo-controlled mobile DNA nanosystems constructed in the DNA nanostructures2016

    • Author(s)
      Masayuki Endo
    • Organizer
      13th Conference on the Foundations of Nanoscience 2016
    • Place of Presentation
      Snowbird, UT, USA
    • Year and Date
      2016-04-11
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Book] CSJカレントレビュー 分子マシンの展開2017

    • Author(s)
      遠藤政幸 杉山弘
    • Publisher
      化学同人
    • Related Report
      2017 Annual Research Report
  • [Book] RNA Technologies (V. A. Erdmann, S. Jurga, J. Barciszewski Eds.) Modified Nucleic Acids in Biology and Medicine Volume 72016

    • Author(s)
      Masayuki Endo
    • Publisher
      Springer Verlag
    • Related Report
      2016 Research-status Report
  • [Remarks] DNA Nanotechnology Group, Kyoto University

    • URL

      http://kuchem.kyoto-u.ac.jp/chembio/top_page_j.html

    • Related Report
      2017 Annual Research Report
  • [Remarks] 京都大学 DNAナノテクノロジー

    • URL

      http://kuchem.kyoto-u.ac.jp/chembio/top_page_j.html

    • Related Report
      2016 Research-status Report

URL: 

Published: 2016-04-21   Modified: 2022-06-16  

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